##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140242_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6954727 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.37430973207144 31.0 31.0 34.0 30.0 34.0 2 31.4863551078281 31.0 31.0 34.0 29.0 34.0 3 31.599900758146223 31.0 31.0 34.0 29.0 34.0 4 35.25539809111127 37.0 35.0 37.0 33.0 37.0 5 35.37966551382966 37.0 35.0 37.0 33.0 37.0 6 35.53406481663479 37.0 35.0 37.0 33.0 37.0 7 35.50616106139033 37.0 35.0 37.0 33.0 37.0 8 35.44692149670289 37.0 35.0 37.0 33.0 37.0 9 37.113960476090575 39.0 37.0 39.0 33.0 39.0 10-11 37.11566075850281 39.0 37.0 39.0 33.0 39.0 12-13 37.06573500296992 39.0 37.0 39.0 33.0 39.0 14-15 38.44818099977181 40.0 38.0 41.0 33.0 41.0 16-17 38.44825519391344 40.0 38.0 41.0 33.0 41.0 18-19 38.46021339155369 40.0 38.0 41.0 33.5 41.0 20-21 38.518394940336805 40.0 38.0 41.0 34.0 41.0 22-23 38.49988001922152 40.0 38.0 41.0 33.0 41.0 24-25 38.527887769124035 40.0 38.0 41.0 33.0 41.0 26-27 38.51495418568062 40.0 38.0 41.0 33.0 41.0 28-29 38.45616102376347 40.0 38.0 41.0 33.0 41.0 30-31 38.39025175218501 40.0 38.0 41.0 33.0 41.0 32-33 38.35683004423086 40.0 38.0 41.0 33.0 41.0 34-35 38.2886025881341 40.0 38.0 41.0 33.0 41.0 36-37 38.20435917716047 40.0 38.0 41.0 33.0 41.0 38-39 38.11607667200987 40.0 38.0 41.0 33.0 41.0 40-41 38.0655219461231 40.0 38.0 41.0 33.0 41.0 42-43 37.91068428631173 40.0 37.0 41.0 32.0 41.0 44-45 37.72064204443233 40.0 37.0 41.0 32.0 41.0 46-47 37.56808903343374 40.0 37.0 41.0 31.0 41.0 48-49 37.431478465207285 40.0 36.0 41.0 31.0 41.0 50-51 37.295062583706944 39.0 36.0 41.0 31.0 41.0 52-53 37.143104128812524 39.0 36.0 40.5 31.0 41.0 54-55 36.962000584650525 39.0 35.0 40.0 30.5 41.0 56-57 36.92122005722361 39.0 35.0 40.0 30.5 41.0 58-59 36.96158386743733 39.0 35.0 40.0 31.0 41.0 60-61 37.23802095651207 39.0 35.0 41.0 31.0 41.0 62-63 37.174098297704006 39.0 35.0 41.0 31.0 41.0 64-65 36.93923638337438 38.5 35.0 41.0 31.0 41.0 66-67 36.70577235063952 38.0 35.0 40.0 31.0 41.0 68-69 36.406926195164075 37.0 35.0 40.0 31.0 41.0 70-71 36.14909651597259 37.0 35.0 39.5 31.0 41.0 72-73 35.84126715289699 36.0 35.0 39.0 31.0 41.0 74-75 35.53172395943065 36.0 34.0 39.0 30.0 41.0 76-77 35.23297719169378 35.5 34.0 38.5 30.0 40.0 78-79 34.93502016365851 35.0 34.0 37.0 30.0 39.0 80-81 34.648182725457566 35.0 34.0 37.0 30.0 39.0 82-83 34.40919170192349 35.0 34.0 36.0 30.0 39.0 84-85 34.19250001324967 35.0 34.0 36.0 30.0 37.0 86-87 34.00964516086236 35.0 34.0 36.0 30.0 37.0 88-89 33.86630860063708 35.0 34.0 35.0 30.0 37.0 90-91 33.74857990136357 35.0 34.0 35.0 30.0 36.0 92-93 33.68003556378746 35.0 34.0 35.0 30.0 36.0 94-95 33.65311576074692 35.0 34.0 35.0 30.0 36.0 96-97 33.651639691819454 35.0 34.0 35.0 30.0 36.0 98-99 33.68297914702575 35.0 34.0 35.0 30.0 35.5 100 32.994327987614625 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 24.0 17 221.0 18 990.0 19 3305.0 20 8265.0 21 16412.0 22 25800.0 23 36465.0 24 48258.0 25 60169.0 26 66066.0 27 69533.0 28 79459.0 29 97018.0 30 113132.0 31 134837.0 32 172079.0 33 224668.0 34 311994.0 35 449409.0 36 726091.0 37 1333673.0 38 1825155.0 39 1102394.0 40 49307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.40789422791146 20.204272576047916 14.354725929572792 24.03310726646783 2 14.274320850276515 20.676459857872132 41.97974971954502 23.069469572306332 3 18.229877525942932 25.81483259520223 29.990482006274572 25.96480787258027 4 12.54294507158339 17.766693766279 38.79020197288821 30.9001591892494 5 13.644432301066301 37.88363448112224 35.1999223462924 13.272010871519067 6 30.28521868481936 37.3689484468241 19.023744303794558 13.322088564561978 7 27.008215558018854 32.501082886708474 22.84189163769861 17.648809917574056 8 24.418710487375154 36.902726418744706 21.06486357697178 17.61369951690835 9 25.277552511100374 17.86694503876504 21.30748613890998 35.54801631122461 10-11 24.22140276264217 27.00892731970911 28.670288476069274 20.09938144157945 12-13 24.761660247935318 24.451422963972114 28.76211146556507 22.0248053225275 14-15 22.10828912471611 26.052613227141585 26.03015364396672 25.808944004175583 16-17 22.124192451424864 29.067205008418778 26.670548938917477 22.138053601238877 18-19 22.177197673322645 28.6494885598991 27.78591732857283 21.387396438205425 20-21 23.105666966460493 27.747155842728503 27.461841021807842 21.68533616900316 22-23 22.895632322427677 27.577487704622765 27.274847213298536 22.252032759651026 24-25 22.53645387071365 27.772747151942312 27.323195990045413 22.36760298729862 26-27 22.49922498504041 27.860720799959626 27.283814082922998 22.35624013207697 28-29 22.454001449616722 27.90493424787724 27.305713137149752 22.335351165356283 30-31 22.683150098381635 27.748430261855404 27.255473472828328 22.31294616693463 32-33 22.44473434210081 27.83771044879333 27.283123487822138 22.43443172128373 34-35 22.580345533582324 27.833205462457606 27.264856515493907 22.321592488466163 36-37 22.611254010742847 27.675447810889004 27.3130820708801 22.400216107488056 38-39 22.46314860938606 27.72352414767863 27.478614898871324 22.334712344063988 40-41 22.605656951242192 27.5791181539424 27.460006929112662 22.355217965702742 42-43 22.47610032282983 27.72942276121458 27.334212966477196 22.460263949478396 44-45 22.53921477726993 27.742894463673135 27.313263920156285 22.40462683890065 46-47 22.517824193567034 27.694890280712674 27.25590431253026 22.531381213190027 48-49 22.45078416105233 27.684320382960408 27.35951020859733 22.505385247389935 50-51 22.352007204733724 27.76476163322561 27.403695191883582 22.479535970157087 52-53 22.49985671332907 27.69728251019659 27.25987864780756 22.542982128666782 54-55 22.5298545201077 27.627394970781015 27.28390544490371 22.55884506420757 56-57 22.494127753139058 27.69806740917769 27.311888122910332 22.495916714772925 58-59 22.504988396534273 27.712655632602655 27.319358796659955 22.46299717420312 60-61 22.542486480132993 27.649543080761767 27.345088152310804 22.46288228679444 62-63 22.511757547925676 27.760014849507357 27.29057985592381 22.437647746643165 64-65 22.53992978686261 27.74270119023819 27.25130734866706 22.466061674232137 66-67 22.5436394274194 27.707487634401414 27.18131900709227 22.567553931086923 68-69 22.480762764822245 27.665042253920657 27.304033833171893 22.550161148085206 70-71 22.455347389983032 27.528830594996297 27.359885369859523 22.655936645161148 72-73 22.55819888401635 27.58317580299996 27.302582219330795 22.556043093652903 74-75 22.38270390049778 27.779843747268952 27.31766546844263 22.519786883790637 76-77 22.527293045346724 27.641323310035016 27.24673188036764 22.58465176425062 78-79 22.418728729087373 27.637483127859948 27.27926073419349 22.664527408859193 80-81 22.435955905695852 27.69031693271019 27.304051740509315 22.569675421084643 82-83 22.462494236346167 27.68729993914879 27.388369390355233 22.46183643414981 84-85 22.524823623183625 27.719307007300042 27.329124507168352 22.42674486234798 86-87 22.384339051448283 27.69904743569956 27.42705480291967 22.48955870993249 88-89 22.411867116232937 27.676320123459337 27.38647473410621 22.525338026201517 90-91 22.456491656430096 27.75788550026914 27.357548426057416 22.428074417243344 92-93 22.459179711232657 27.738898878532115 27.37458568322068 22.427335727014547 94-95 22.31269360503144 27.803953213685496 27.446670669320323 22.43668251196274 96-97 22.380954319127095 27.978247836830384 27.434731647443733 22.20606619659879 98-99 23.462401338236983 29.887493885537257 27.572484960794107 19.077619815431653 100 22.472395850489495 30.782502814084168 21.364595129675042 25.380506205751296 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2729.0 1 1990.0 2 1364.0 3 1435.5 4 1360.0 5 1414.0 6 1640.0 7 1942.5 8 2173.5 9 2431.5 10 2785.5 11 3057.5 12 3285.0 13 3658.0 14 4229.5 15 4985.0 16 5972.5 17 7155.0 18 8626.5 19 10602.5 20 13301.0 21 16929.0 22 21950.0 23 28549.0 24 36986.5 25 47823.5 26 60583.0 27 73823.5 28 88936.5 29 105737.5 30 120963.5 31 136317.0 32 152275.5 33 166242.5 34 179875.0 35 192748.5 36 207363.0 37 223254.5 38 234633.0 39 243148.5 40 251825.5 41 259618.0 42 265980.0 43 273437.5 44 280398.5 45 287521.5 46 291719.0 47 293255.5 48 294568.5 49 293453.0 50 291151.5 51 285816.5 52 277494.0 53 267294.5 54 255927.5 55 241230.5 56 222925.0 57 203117.5 58 181774.5 59 159129.5 60 134420.0 61 110698.0 62 90481.0 63 71504.5 64 54617.5 65 41786.0 66 32194.5 67 25190.0 68 19656.5 69 15308.0 70 12077.5 71 9394.0 72 7171.5 73 5387.5 74 4181.5 75 3244.0 76 2409.5 77 1828.0 78 1385.0 79 1012.5 80 760.0 81 559.0 82 427.5 83 301.0 84 199.5 85 140.0 86 108.0 87 86.0 88 57.0 89 37.5 90 30.0 91 25.0 92 20.0 93 11.0 94 4.5 95 3.0 96 2.5 97 2.0 98 2.0 99 6.0 100 19.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012193145755397731 3 0.022732739904815818 4 0.01967007475634917 5 0.011172257372575517 6 0.014019241876783948 7 0.01568717219238081 8 0.0020992916041132886 9 1.0065096732050016E-4 10-11 1.1502967693771445E-4 12-13 0.003041097084040826 14-15 1.7254451540657168E-4 16-17 5.320122558369293E-4 18-19 3.594677404303577E-5 20-21 5.7541968234531854E-5 22-23 7.1973285819448965E-6 24-25 2.881044828193213E-5 26-27 0.00256649529783457 28-29 0.003796780431249293 30-31 0.0027769405173555892 32-33 0.004291970267375973 34-35 0.0062040438001128365 36-37 0.0011614619899145654 38-39 0.0014108831114205257 40-41 5.768064783945671E-4 42-43 5.953520271885364E-5 44-45 6.745882313435879E-5 46-47 0.004020091692850788 48-49 7.924180828282621E-4 50-51 3.1499866932269447E-4 52-53 0.004592707755937159 54-55 2.342980294364234E-4 56-57 1.7337924100400138E-4 58-59 6.443014006953364E-4 60-61 1.6057323359808648E-5 62-63 0.0 64-65 1.6353354117901304E-5 66-67 0.0020396277373847995 68-69 0.0 70-71 3.6256018077419243E-4 72-73 0.001959771013538183 74-75 1.635935193546632E-4 76-77 2.6111701332271227E-5 78-79 8.80304627655791E-6 80-81 0.0034649006896221237 82-83 1.4417561599257205E-4 84-85 4.192161387277337E-4 86-87 0.013975701822685956 88-89 6.811940790983901E-4 90-91 0.0010493281605551495 92-93 2.874869852246064E-5 94-95 2.236657632190599E-4 96-97 8.934504719701754E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2232.0 20-21 4234.0 22-23 4947.0 24-25 5940.0 26-27 8016.0 28-29 11039.0 30-31 17079.0 32-33 20422.0 34-35 27203.0 36-37 38634.0 38-39 43037.0 40-41 42440.0 42-43 45789.0 44-45 53075.0 46-47 54828.0 48-49 54534.0 50-51 52414.0 52-53 52897.0 54-55 56863.0 56-57 58656.0 58-59 58138.0 60-61 57180.0 62-63 55857.0 64-65 58551.0 66-67 62276.0 68-69 62563.0 70-71 62638.0 72-73 61024.0 74-75 61793.0 76-77 63893.0 78-79 66516.0 80-81 65606.0 82-83 62537.0 84-85 62278.0 86-87 64452.0 88-89 68340.0 90-91 71122.0 92-93 73692.0 94-95 88945.0 96-97 234747.0 98-99 436335.0 100-101 4401965.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.78304620779271 #Duplication Level Percentage of deduplicated Percentage of total 1 89.93950053431881 77.15284330241268 2 7.103065263237121 12.186451513864744 3 1.6761859814072708 4.313650184877429 4 0.6201039201195265 2.12777612932987 5 0.27141094629313195 1.1641228873582241 6 0.13955162827031517 0.7182698265771096 7 0.07833490591024586 0.47038647973672004 8 0.04380448218944152 0.3006145535812235 9 0.03205715681152196 0.24749645076479207 >10 0.09448795763028169 1.223643486732409 >50 0.0013322636594711688 0.07379659320993359 >100 1.649601529012727E-4 0.020948591554939274 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.751483846885722E-5 0.0 0.0 0.0 3 0.0 5.751483846885722E-5 0.0 0.0 0.0 4 0.0 1.1502967693771445E-4 0.0 0.0 1.4378709617214306E-5 5 0.0 1.1502967693771445E-4 0.0 1.4378709617214306E-5 1.4378709617214306E-5 6 0.0 1.1502967693771445E-4 0.0 2.875741923442861E-5 1.4378709617214306E-5 7 0.0 1.1502967693771445E-4 0.0 2.875741923442861E-5 1.4378709617214306E-5 8 0.0 1.4378709617214307E-4 0.0 2.875741923442861E-5 1.4378709617214306E-5 9 0.0 2.731954827270718E-4 0.0 2.875741923442861E-5 2.875741923442861E-5 10-11 0.0 2.731954827270718E-4 0.0 2.875741923442861E-5 2.875741923442861E-5 12-13 0.0 2.731954827270718E-4 0.0 3.594677404303577E-5 2.875741923442861E-5 14-15 0.0 3.666570952389648E-4 0.0 6.470419327746438E-5 5.751483846885723E-5 16-17 0.0 3.9541451447339343E-4 0.0 1.1502967693771445E-4 7.189354808607153E-5 18-19 0.0 4.6011870775085784E-4 0.0 1.5097645098075023E-4 8.627225770328584E-5 20-21 0.0 5.176335462197151E-4 0.0 1.7973387021517884E-4 8.627225770328584E-5 22-23 0.0 5.895270943057866E-4 0.0 3.1633161157871474E-4 9.346161251189299E-5 24-25 0.0 6.039058039230009E-4 0.0 5.967164491143936E-4 1.0065096732050014E-4 26-27 0.0 6.182845135402152E-4 0.0 0.0011215393501427158 1.078403221291073E-4 28-29 0.0 6.182845135402152E-4 0.0 0.005593318041096365 1.1502967693771445E-4 30-31 0.0 7.405035452865368E-4 0.0 0.018958328630297065 1.1502967693771445E-4 32-33 0.0 7.476929000951439E-4 0.0 0.0527626749403679 1.1502967693771445E-4 34-35 0.0 8.986693510758941E-4 0.0 0.08905453801421681 1.1502967693771445E-4 36-37 0.0 0.0010568351568652516 0.0 0.13735981297324829 1.1502967693771445E-4 38-39 0.0 0.0011359180597599302 0.0 0.18269588439632498 1.2940838655492876E-4 40-41 0.0 0.0012797051559320731 0.0 0.21885833908361896 1.4378709617214307E-4 42-43 0.0 0.0013012732203578946 0.0 0.2554665337690466 1.5097645098075023E-4 44-45 0.0 0.0014450603165300376 0.0 0.2812116133386688 1.5816580578935737E-4 46-47 0.0 0.0015672793482763593 0.0 0.3023483164759738 1.653551605979645E-4 48-49 0.0 0.0015672793482763593 0.0 0.31705773641438406 1.7254451540657168E-4 50-51 0.0 0.0017973387021517884 0.0 0.3274823008868644 1.7254451540657168E-4 52-53 0.0 0.0018117174117690026 0.0 0.33535464440228924 1.7254451540657168E-4 54-55 7.189354808607153E-6 0.00181890676657761 0.0 0.34117083244245244 1.7254451540657168E-4 56-57 1.4378709617214306E-5 0.0018404748310034311 0.0 0.3473392988682374 1.7254451540657168E-4 58-59 1.4378709617214306E-5 0.0018404748310034311 0.0 0.35299732110261123 1.7254451540657168E-4 60-61 1.4378709617214306E-5 0.001883610959855074 0.0 0.35825273946770303 1.7254451540657168E-4 62-63 1.4378709617214306E-5 0.001926747088706717 0.0 0.36234348235380054 1.7254451540657168E-4 64-65 1.4378709617214306E-5 0.002113670313730503 0.0 0.3654996091147791 1.7254451540657168E-4 66-67 1.4378709617214306E-5 0.002135238378156324 0.0 0.36854070619881985 1.7254451540657168E-4 68-69 1.4378709617214306E-5 0.0021855638618165744 0.0 0.37133017586455946 1.7254451540657168E-4 70-71 1.4378709617214306E-5 0.002214321281051003 0.0 0.3736092013388879 1.7254451540657168E-4 72-73 1.4378709617214306E-5 0.002214321281051003 0.0 0.376096718102666 1.7254451540657168E-4 74-75 1.4378709617214306E-5 0.0022574574099026457 0.0 0.37828947131929114 1.7254451540657168E-4 76-77 1.4378709617214306E-5 0.0023149722483715033 0.0 0.3800364845377827 1.7254451540657168E-4 78-79 1.4378709617214306E-5 0.0023293509579887174 0.0 0.38137370453218367 1.7254451540657168E-4 80-81 1.4378709617214306E-5 0.0023293509579887174 0.0 0.38199198904572385 1.8692322502378598E-4 82-83 1.4378709617214306E-5 0.0023293509579887174 0.0 0.3824233503342403 2.156806442582146E-4 84-85 1.4378709617214306E-5 0.0023365403127973247 0.0 0.3826390309784985 2.156806442582146E-4 86-87 1.4378709617214306E-5 0.002358108377223146 0.0 0.38265340968811573 2.156806442582146E-4 88 1.4378709617214306E-5 0.002444380634926432 0.0 0.3826605990429243 2.300593538754289E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5860 0.0 36.153656 1 GTATCAA 9395 0.0 30.787287 1 TCAACGC 10225 0.0 26.963974 4 ATCAACG 10470 0.0 26.25299 3 CAACGCA 10545 0.0 26.064207 5 TATCAAC 11170 0.0 25.099926 2 AACGCAG 10950 0.0 24.982544 6 ACGCAGA 13140 0.0 20.850365 7 GTACATG 22370 0.0 20.434868 1 CGCAGAG 13495 0.0 20.20643 8 TACATGG 22460 0.0 19.430412 2 ACATGGG 22875 0.0 18.671206 3 CATGGGG 17175 0.0 17.062243 4 GCAGAGT 16695 0.0 16.105242 9 AGAGTAC 14540 0.0 15.032205 10-11 GGACCGT 760 0.0 14.464596 6 CAGAGTA 16440 0.0 14.426388 10-11 TATACCG 590 0.0 14.333614 5 GTACTAG 1695 0.0 13.971094 1 GTACTGG 4090 0.0 13.3376255 1 >>END_MODULE