##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140238_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10602836 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.754033826421534 33.0 31.0 34.0 30.0 34.0 2 31.833386652401302 33.0 31.0 34.0 30.0 34.0 3 31.964462809761464 34.0 31.0 34.0 30.0 34.0 4 35.4480544639189 37.0 35.0 37.0 33.0 37.0 5 35.512117135453195 37.0 35.0 37.0 33.0 37.0 6 35.533573376028826 37.0 35.0 37.0 33.0 37.0 7 35.46648208083196 37.0 35.0 37.0 33.0 37.0 8 35.449722979776354 37.0 35.0 37.0 33.0 37.0 9 37.03552172267872 39.0 37.0 39.0 33.0 39.0 10-11 37.01267901342622 39.0 37.0 39.0 33.0 39.0 12-13 36.95562559866059 39.0 37.0 39.0 33.0 39.0 14-15 38.30776671449035 40.0 38.0 41.0 33.0 41.0 16-17 38.313642406616495 40.0 38.0 41.0 33.0 41.0 18-19 38.31541433820159 40.0 38.0 41.0 33.0 41.0 20-21 38.379954635131654 40.0 38.0 41.0 33.0 41.0 22-23 38.35951810098428 40.0 38.0 41.0 33.0 41.0 24-25 38.371365727802875 40.0 38.0 41.0 33.0 41.0 26-27 38.35412315696907 40.0 38.0 41.0 33.0 41.0 28-29 38.32644999823758 40.0 38.0 41.0 33.0 41.0 30-31 38.273784980116886 40.0 38.0 41.0 33.0 41.0 32-33 38.23288888159915 40.0 38.0 41.0 33.0 41.0 34-35 38.1696955147992 40.0 38.0 41.0 33.0 41.0 36-37 38.10470689655797 40.0 38.0 41.0 33.0 41.0 38-39 38.01938411690837 40.0 38.0 41.0 32.0 41.0 40-41 37.94271944471772 40.0 37.0 41.0 32.0 41.0 42-43 37.84470092493254 40.0 37.0 41.0 32.0 41.0 44-45 37.70338327364723 40.0 37.0 41.0 32.0 41.0 46-47 37.5909418763616 40.0 37.0 41.0 31.0 41.0 48-49 37.47889384115442 40.0 36.0 41.0 31.0 41.0 50-51 37.33114314600314 39.5 36.0 41.0 31.0 41.0 52-53 37.19874499231091 39.0 36.0 41.0 31.0 41.0 54-55 37.044901409353315 39.0 35.0 41.0 30.5 41.0 56-57 36.85042046810503 39.0 35.0 40.0 30.0 41.0 58-59 37.00443175076599 39.0 35.0 40.5 31.0 41.0 60-61 37.07061375445842 39.0 35.0 41.0 31.0 41.0 62-63 36.90325675961486 39.0 35.0 40.5 31.0 41.0 64-65 36.68993920903254 38.0 35.0 40.0 31.0 41.0 66-67 36.407190307324605 37.5 35.0 40.0 31.0 41.0 68-69 36.12343084783224 37.0 34.5 40.0 30.0 41.0 70-71 35.88699263028104 37.0 34.0 39.0 30.0 41.0 72-73 35.649623000379194 36.0 34.0 39.0 30.0 41.0 74-75 35.38500823567321 36.0 34.0 39.0 30.0 40.5 76-77 35.143977164271426 35.0 34.0 38.0 30.0 40.0 78-79 34.85284191615325 35.0 34.0 37.0 30.0 39.0 80-81 34.58375821014444 35.0 34.0 37.0 30.0 39.0 82-83 34.336168154668954 35.0 34.0 36.0 30.0 38.5 84-85 34.1323820534174 35.0 34.0 36.0 30.0 37.0 86-87 33.96023266222042 35.0 34.0 36.0 30.0 37.0 88-89 33.83365563273867 35.0 34.0 35.0 30.0 37.0 90-91 33.73937222414443 35.0 34.0 35.0 30.0 36.0 92-93 33.666245147979055 35.0 34.0 35.0 30.0 36.0 94-95 33.6505173799874 35.0 34.0 35.0 30.0 36.0 96-97 33.659356970423325 35.0 34.0 35.0 30.0 36.0 98-99 33.698089013208104 35.0 34.0 35.0 30.0 35.5 100 33.36111756875116 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 5.0 16 49.0 17 362.0 18 1493.0 19 4317.0 20 11220.0 21 23094.0 22 38125.0 23 54747.0 24 72937.0 25 91479.0 26 106770.0 27 118719.0 28 136685.0 29 166590.0 30 196913.0 31 227023.0 32 282749.0 33 366509.0 34 492778.0 35 684084.0 36 1059133.0 37 1905842.0 38 2742407.0 39 1722518.0 40 96287.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.642254958956265 20.012334435805666 14.24158593040579 24.103824674832282 2 14.334334700640468 20.655068134600967 41.82790340244817 23.182693762310386 3 18.13396906261683 25.703472165371604 30.057128111761795 26.105430660249766 4 12.524498162567072 17.666377184368407 38.80120375341088 31.00792089965364 5 13.64149091628625 37.79331577951606 35.27316595525229 13.292027348945403 6 30.45492734208093 37.16526408594832 19.073198906405793 13.30660966556495 7 27.19167777375789 32.34164897014346 22.843256275962393 17.62341698013626 8 24.641581675238903 36.5512560132508 21.106687136665535 17.70047517484476 9 25.62337095471438 17.430676094584506 21.17070376265369 35.775249188047425 10-11 24.24373378410605 26.790011403087128 28.809839976221447 20.15641483658538 12-13 24.836647200772475 24.382682981071635 28.696427685545483 22.084242132610406 14-15 22.19306491920909 25.872548679798534 26.094168704447608 25.840217696544766 16-17 22.12289803601343 28.925162565211416 26.749105096737452 22.2028343020377 18-19 22.179648791280243 28.5600265177075 27.77299310700884 21.487331584003417 20-21 23.191121913506052 27.64449436520656 27.470359377115084 21.694024344172306 22-23 22.875075537608936 27.544703226609712 27.25131111664782 22.328910119133532 24-25 22.543643758778767 27.701417521425558 27.363076740758213 22.391861979037465 26-27 22.474797325348213 27.845478142106224 27.28298249913711 22.396742033408458 28-29 22.43259899232608 27.85509307169135 27.3461043371742 22.36620359880837 30-31 22.717152928334432 27.672308737902114 27.26766209118833 22.34287624257512 32-33 22.47664910352205 27.7973727380954 27.26858684023134 22.45739131815121 34-35 22.63744469944782 27.739127116729286 27.30156742995708 22.321860753865817 36-37 22.5813030195534 27.55001307331454 27.346502276744484 22.522181630387582 38-39 22.373340631206155 27.640098060445645 27.567319348485313 22.419241959862884 40-41 22.6217213465744 27.455416344505736 27.51585755521165 22.407004753708218 42-43 22.328007151762783 27.49718738105072 27.530186644298183 22.644618822888315 44-45 22.3604715773693 27.553806228255624 27.559324740768847 22.526397453606226 46-47 22.299166419143873 27.537291852635953 27.471054557033668 22.6924871711865 48-49 22.18951055288352 27.572171576210426 27.583275789349614 22.655042081556438 50-51 22.155053069218162 27.68379904923397 27.5384687232111 22.622679158336766 52-53 22.28376198868693 27.619143439239785 27.434709621383558 22.66238495068973 54-55 22.373095229198626 27.461091625926194 27.43243106772193 22.73338207715325 56-57 22.356578655196742 27.556235225269244 27.348809942811563 22.738376176722454 58-59 22.32232652274034 27.50907746643989 27.433257926395672 22.735338084424097 60-61 22.434597627400315 27.46742834760051 27.429098236177246 22.668875788821925 62-63 22.450918958831448 27.616012587651444 27.251467973317794 22.68160048019931 64-65 22.531201875347794 27.572604097146865 27.135306417113288 22.760887610392057 66-67 22.562512926698442 27.6114438820671 27.03477706100932 22.791266130225136 68-69 22.50033964297119 27.558574052873418 27.13645136816926 22.804634935986133 70-71 22.594348676762806 27.360761812942926 27.222254334629703 22.822635175664562 72-73 22.6616225739562 27.357494308771123 27.150880892943142 22.830002224329533 74-75 22.57194880438664 27.544786570820428 27.237856454130778 22.645408170662158 76-77 22.692002907030385 27.490640153303588 27.179148427895054 22.638208511770973 78-79 22.646888265494187 27.47242400738317 27.165999952437442 22.714687774685196 80-81 22.6478450108095 27.562245536318386 27.174291558332612 22.6156178945395 82-83 22.66178027415654 27.507856971073974 27.35600283048973 22.474359924279756 84-85 22.648377839203622 27.601936218780594 27.28940034420529 22.460285597810497 86-87 22.475954197758504 27.67464525505855 27.37471496231646 22.47468558486649 88-89 22.551590970943522 27.64278501005968 27.32576313798951 22.479860881007287 90-91 22.534766366558102 27.713726113227278 27.334378054680915 22.417129465533712 92-93 22.575214766655993 27.657659183076746 27.380976449398513 22.386149600868745 94-95 22.414264561893358 27.796228399331728 27.361984493941055 22.427522544833852 96-97 22.45928911140271 27.881813961528568 27.453415472149928 22.205481454918793 98-99 23.512191622195107 29.843873322862557 27.631103468770917 19.012831586171416 100 22.457313585479184 30.863434460226035 21.355714208087168 25.32353774620761 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3576.0 1 2662.0 2 1916.5 3 2084.0 4 2045.0 5 2153.0 6 2488.5 7 2913.0 8 3277.5 9 3688.5 10 4208.0 11 4660.0 12 5179.0 13 5845.5 14 6669.5 15 7771.0 16 9147.5 17 10744.5 18 12774.5 19 15594.5 20 19333.0 21 24231.0 22 30993.0 23 39888.0 24 51150.5 25 66084.0 26 84942.0 27 105337.5 28 126275.5 29 150183.5 30 173398.5 31 195496.0 32 220101.5 33 244011.5 34 267963.0 35 290424.5 36 314261.5 37 337734.0 38 353818.0 39 367949.5 40 384929.0 41 399778.5 42 410792.0 43 422068.5 44 431646.0 45 441440.5 46 449371.5 47 454370.5 48 456850.0 49 454262.0 50 448721.0 51 438729.0 52 421549.0 53 397826.5 54 373566.0 55 349784.0 56 324920.0 57 297209.5 58 267910.5 59 237242.0 60 201889.0 61 167311.0 62 135887.5 63 108176.5 64 84943.0 65 65962.0 66 51251.5 67 39647.5 68 30625.5 69 23970.5 70 18677.0 71 14099.0 72 10563.5 73 7747.0 74 5645.5 75 4190.0 76 3157.0 77 2419.0 78 1924.5 79 1576.0 80 1235.5 81 924.5 82 693.5 83 482.5 84 339.5 85 249.0 86 192.0 87 156.5 88 108.5 89 75.0 90 59.5 91 50.0 92 41.5 93 23.0 94 11.0 95 9.5 96 9.0 97 8.5 98 5.0 99 5.0 100 25.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.3204014473108892E-4 6 0.0 7 0.0 8 1.8862877818726992E-5 9 0.0 10-11 5.187291400149922E-5 12-13 1.697659003685429E-4 14-15 3.301003618277223E-5 16-17 1.3204014473108892E-4 18-19 0.0010327425605753027 20-21 5.190004410088293E-4 22-23 0.0 24-25 1.370296239618884E-4 26-27 1.8917873067314617E-4 28-29 0.0 30-31 0.0 32-33 7.128987527883846E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.476645120714968E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.9516265385299312E-4 76-77 5.642965721579006E-6 78-79 4.4589697607534055E-4 80-81 2.8975999758919683E-5 82-83 4.1130573706869454E-5 84-85 4.765878312948183E-4 86-87 1.2082012945514411E-4 88-89 3.064078084475652E-5 90-91 2.4882210724705585E-5 92-93 4.8016319483405056E-4 94-95 3.5328802596397207E-4 96-97 3.676550481762701E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3794.0 20-21 7077.0 22-23 8176.0 24-25 9141.0 26-27 11592.0 28-29 15841.0 30-31 21390.0 32-33 23260.0 34-35 28636.0 36-37 44692.0 38-39 52442.0 40-41 47970.0 42-43 56402.0 44-45 67094.0 46-47 73681.0 48-49 70339.0 50-51 69784.0 52-53 70623.0 54-55 77192.0 56-57 86369.0 58-59 89703.0 60-61 89448.0 62-63 89250.0 64-65 94005.0 66-67 99192.0 68-69 101177.0 70-71 101507.0 72-73 100942.0 74-75 104034.0 76-77 112065.0 78-79 118297.0 80-81 119453.0 82-83 116499.0 84-85 115531.0 86-87 117257.0 88-89 120045.0 90-91 124043.0 92-93 127103.0 94-95 145046.0 96-97 357012.0 98-99 635445.0 100-101 6680287.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.97144198765552 #Duplication Level Percentage of deduplicated Percentage of total 1 89.79606267370883 76.3010093019893 2 7.08502741148187 12.040499913513617 3 1.716014906418749 4.374367832121387 4 0.651749767247673 2.215204701526145 5 0.2893028913369375 1.2291241924048797 6 0.1530067869305962 0.7800724391634434 7 0.08666113186832242 0.5154604937393606 8 0.06113858848751237 0.41560272198990406 9 0.03720521332735762 0.2845242563295524 >10 0.12057661400693334 1.5906353396027881 >50 0.002560952866937512 0.1460236486820635 >100 6.745746430274948E-4 0.09215864569246922 >500 1.848767537248971E-5 0.015316513245151141 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.772575563745398E-5 0.0 9.431438909363494E-6 0.0 3 0.0 4.7157194546817474E-5 0.0 9.431438909363494E-6 0.0 4 0.0 8.488295018427145E-5 0.0 5.658863345618097E-5 0.0 5 0.0 8.488295018427145E-5 0.0 8.488295018427145E-5 0.0 6 0.0 8.488295018427145E-5 0.0 8.488295018427145E-5 0.0 7 0.0 8.488295018427145E-5 0.0 8.488295018427145E-5 0.0 8 9.431438909363494E-6 8.488295018427145E-5 0.0 9.431438909363495E-5 0.0 9 9.431438909363494E-6 1.6033446145917942E-4 0.0 1.0374582800299844E-4 0.0 10-11 1.886287781872699E-5 1.6033446145917942E-4 0.0 1.2260870582172544E-4 0.0 12-13 1.886287781872699E-5 1.6033446145917942E-4 0.0 1.3204014473108892E-4 0.0 14-15 1.886287781872699E-5 2.3578597273408736E-4 0.0 1.3675586418577067E-4 2.8294316728090485E-5 16-17 2.8294316728090485E-5 2.3578597273408736E-4 0.0 1.509030225498159E-4 2.8294316728090485E-5 18-19 2.8294316728090485E-5 2.499331310981326E-4 0.0 1.5561874200449767E-4 2.8294316728090485E-5 20-21 2.8294316728090485E-5 2.7351172837154135E-4 0.0 2.687960089168596E-4 2.8294316728090485E-5 22-23 2.8294316728090485E-5 3.018060450996318E-4 0.0 6.790636014741716E-4 3.301003618277223E-5 24-25 5.6588633456180964E-5 3.348160812824041E-4 0.0 0.0014288629947685695 4.7157194546817474E-5 26-27 6.602007236554446E-5 3.5367895910113105E-4 0.0 0.003532073871556629 4.7157194546817474E-5 28-29 6.602007236554446E-5 3.5839467855581283E-4 0.0 0.016986021475763655 4.7157194546817474E-5 30-31 6.602007236554446E-5 3.9612043419326676E-4 0.0 0.05904080757261548 4.7157194546817474E-5 32-33 6.602007236554446E-5 3.9612043419326676E-4 0.0 0.16113141804702064 5.658863345618097E-5 34-35 6.602007236554446E-5 4.4327762874008425E-4 0.0 0.2946428672479703 5.658863345618097E-5 36-37 6.602007236554446E-5 4.998662621962652E-4 0.0 0.4804374980429764 5.658863345618097E-5 38-39 6.602007236554446E-5 5.092977011056288E-4 0.0 0.6846422975890601 5.658863345618097E-5 40-41 6.602007236554446E-5 5.658863345618097E-4 0.0 0.8760344873767736 5.658863345618097E-5 42-43 6.602007236554446E-5 5.753177734711732E-4 0.0 1.1269060466463878 5.658863345618097E-5 44-45 7.073579182022621E-5 6.460535652913994E-4 0.0 1.3133891724817774 5.658863345618097E-5 46-47 7.545151127490796E-5 7.073579182022621E-4 0.0 1.4826835009048522 6.130435291086272E-5 48-49 7.545151127490796E-5 7.073579182022621E-4 0.0 1.6046461531612861 7.545151127490796E-5 50-51 7.545151127490796E-5 8.063880267505789E-4 0.0 1.7515172355773494 7.545151127490796E-5 52-53 7.545151127490796E-5 8.205351851146241E-4 0.0 1.8935311269550903 7.545151127490796E-5 54-55 7.545151127490796E-5 8.205351851146241E-4 0.0 2.0227937129273714 7.545151127490796E-5 56-57 7.545151127490796E-5 8.205351851146241E-4 0.0 2.126643286758373 7.545151127490796E-5 58-59 8.01672307295897E-5 8.205351851146241E-4 0.0 2.1746917522821256 7.545151127490796E-5 60-61 8.488295018427145E-5 8.205351851146241E-4 0.0 2.1928519879021047 8.488295018427145E-5 62-63 8.488295018427145E-5 8.205351851146241E-4 0.0 2.2040235272902455 8.488295018427145E-5 64-65 8.488295018427145E-5 8.865552574801685E-4 0.0 2.208446872138737 8.488295018427145E-5 66-67 8.488295018427145E-5 9.054181352988955E-4 0.0 2.2124410865168525 8.488295018427145E-5 68-69 8.488295018427145E-5 9.14849574208259E-4 0.0 2.2162655349945997 8.488295018427145E-5 70-71 8.488295018427145E-5 9.289967325723043E-4 0.0 2.2201560035447123 8.488295018427145E-5 72-73 9.431438909363495E-5 9.33712452026986E-4 0.0 2.2234475757240797 1.0374582800299844E-4 74-75 1.0374582800299844E-4 9.478596103910312E-4 0.0 2.2263571746276183 1.0374582800299844E-4 76-77 1.0374582800299844E-4 9.950168049378486E-4 0.0 2.2289791146444218 1.0374582800299844E-4 78-79 1.0374582800299844E-4 0.0010185954022112575 0.0 2.2306249007341057 1.0374582800299844E-4 80-81 1.0374582800299844E-4 0.0010185954022112575 0.0 2.2313699844079453 1.1789298636704368E-4 82-83 1.0374582800299844E-4 0.0010327425605753027 0.0 2.2319405864619615 1.3204014473108892E-4 84-85 1.0374582800299844E-4 0.0010374582800299844 0.0 2.2321244995206944 1.3204014473108892E-4 86-87 1.0374582800299844E-4 0.001046889718939348 0.0 2.232176372434696 1.3204014473108892E-4 88 1.0374582800299844E-4 0.001103478352395529 0.0 2.2321858038736053 1.3204014473108892E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8860 0.0 37.865623 1 GTATCAA 14745 0.0 31.836561 1 TCAACGC 15860 0.0 28.123808 4 ATCAACG 16540 0.0 26.993277 3 CAACGCA 16665 0.0 26.81632 5 AACGCAG 17220 0.0 25.952036 6 TATCAAC 17780 0.0 25.589033 2 ACGCAGA 20465 0.0 21.816214 7 GTACATG 35110 0.0 21.53291 1 CGCAGAG 21405 0.0 20.897884 8 TACATGG 35430 0.0 20.618345 2 ACATGGG 36260 0.0 19.560055 3 CATGGGG 26555 0.0 17.357405 4 GCAGAGT 26920 0.0 16.521841 9 GTGGTAT 5840 0.0 16.090933 1 AGAGTAC 22640 0.0 15.137754 10-11 GTGTAGC 5550 0.0 14.786526 1 CAGAGTA 25975 0.0 14.683843 10-11 ATGGGGG 14290 0.0 13.955404 5 AGGACCG 2190 0.0 13.785295 5 >>END_MODULE