##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140236_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12809971 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40583222241487 31.0 31.0 34.0 28.0 34.0 2 31.49350658170889 31.0 31.0 34.0 28.0 34.0 3 31.639723150036797 33.0 31.0 34.0 28.0 34.0 4 35.14127432450862 37.0 35.0 37.0 32.0 37.0 5 35.21550813815269 37.0 35.0 37.0 32.0 37.0 6 35.21961681255953 37.0 35.0 37.0 32.0 37.0 7 35.14657121393952 37.0 35.0 37.0 32.0 37.0 8 35.12566367246264 37.0 35.0 37.0 32.0 37.0 9 36.659479947300426 39.0 37.0 39.0 32.0 39.0 10-11 36.63411732157707 39.0 37.0 39.0 32.0 39.0 12-13 36.572358594722814 39.0 37.0 39.0 32.0 39.0 14-15 37.84420917112146 40.0 38.0 41.0 32.0 41.0 16-17 37.84147711965936 40.0 38.0 41.0 32.0 41.0 18-19 37.835737372083045 40.0 37.5 41.0 32.0 41.0 20-21 37.91308733119739 40.0 38.0 41.0 32.0 41.0 22-23 37.88219043505258 40.0 37.5 41.0 32.0 41.0 24-25 37.88991874620385 40.0 37.0 41.0 32.0 41.0 26-27 37.873003568336216 40.0 37.0 41.0 32.0 41.0 28-29 37.84697419027904 40.0 37.0 41.0 32.0 41.0 30-31 37.79418008467788 40.0 37.0 41.0 32.0 41.0 32-33 37.75897425767293 40.0 37.0 41.0 31.0 41.0 34-35 37.696021666854435 40.0 37.0 41.0 31.0 41.0 36-37 37.62459402005048 40.0 37.0 41.0 31.0 41.0 38-39 37.53207641059798 40.0 37.0 41.0 31.0 41.0 40-41 37.45391536441896 40.0 36.5 41.0 31.0 41.0 42-43 37.34394308840505 40.0 36.0 41.0 30.5 41.0 44-45 37.188936603813524 39.5 36.0 41.0 30.0 41.0 46-47 37.06859318348252 39.0 36.0 41.0 30.0 41.0 48-49 36.94581347354392 39.0 35.0 41.0 30.0 41.0 50-51 36.79144610715278 39.0 35.0 40.0 30.0 41.0 52-53 36.65199023720329 39.0 35.0 40.0 30.0 41.0 54-55 36.48850810575657 38.5 35.0 40.0 29.5 41.0 56-57 36.295068492877206 38.0 34.0 40.0 29.0 41.0 58-59 36.451438016758246 38.0 34.5 40.0 29.5 41.0 60-61 36.52108452449845 38.0 35.0 40.0 30.0 41.0 62-63 36.35032195391986 38.0 35.0 40.0 30.0 41.0 64-65 36.135283452819806 37.5 34.0 40.0 30.0 41.0 66-67 35.852509516596 37.0 34.0 40.0 29.0 41.0 68-69 35.58207927078648 36.5 34.0 39.5 29.0 41.0 70-71 35.36604071840759 36.0 34.0 39.0 29.0 41.0 72-73 35.153770106647414 36.0 34.0 39.0 29.0 40.5 74-75 34.91196603629123 35.0 34.0 38.5 29.0 40.0 76-77 34.701103651122466 35.0 34.0 37.0 29.0 39.5 78-79 34.434506044108176 35.0 34.0 37.0 29.0 39.0 80-81 34.18414651479692 35.0 33.5 36.5 29.0 39.0 82-83 33.95414437022464 35.0 33.0 36.0 29.0 38.0 84-85 33.76730097651195 35.0 33.0 36.0 29.0 37.0 86-87 33.613621835342556 35.0 33.0 35.0 29.0 37.0 88-89 33.49819298776828 35.0 33.0 35.0 29.0 36.0 90-91 33.412884038510455 35.0 33.0 35.0 29.0 36.0 92-93 33.34042405274691 35.0 33.0 35.0 29.0 36.0 94-95 33.33494550056072 35.0 33.0 35.0 29.0 36.0 96-97 33.36835293030379 35.0 33.0 35.0 29.0 35.5 98-99 33.431963715758286 35.0 33.0 35.0 29.0 35.0 100 33.07139398124193 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 5.0 16 88.0 17 530.0 18 2303.0 19 7565.0 20 19633.0 21 39933.0 22 65546.0 23 92002.0 24 119793.0 25 146734.0 26 168684.0 27 182361.0 28 205354.0 29 242282.0 30 279679.0 31 321601.0 32 394290.0 33 501733.0 34 666113.0 35 920346.0 36 1407548.0 37 2352997.0 38 2920445.0 39 1674055.0 40 78346.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.63808801752947 19.874221417050826 14.25975125158363 24.22793931383607 2 14.558830773309323 20.516541372341905 41.41192825495077 23.512699599398 3 18.347278069560033 25.423578242292667 29.772198547522084 26.456945140625223 4 12.799310786886247 17.4451136540434 38.026463916272725 31.72911164279763 5 13.966717910674614 37.56586772800806 34.82386703526547 13.643547326051861 6 31.028235739175365 36.52153467014094 18.741830094697328 13.708399495986367 7 27.65124136502729 32.102391176373466 22.385398062181405 17.860969396417836 8 25.14629232485202 36.19404825991759 20.615797010578014 18.043862404652376 9 25.889598032657528 17.309164868523123 20.873692844425644 35.92754425439371 10-11 24.69536320057018 26.59924390908876 28.184181575792444 20.521211314548612 12-13 25.179724416771187 24.2465715836182 28.11489372780609 22.458810271804527 14-15 22.548297246140983 25.57055268554699 25.652957253333035 26.22819281497899 16-17 22.450250445668697 28.634116380030424 26.234862955118377 22.680770219182506 18-19 22.55801437675812 28.267756932521102 27.25165540683484 21.92257328388594 20-21 23.6346014757974 27.27528401061154 27.008643947276028 22.081470566315026 22-23 23.409742943793745 27.141985495122583 26.76953580834184 22.67873575274183 24-25 23.013516269351523 27.365636790431086 26.91614480034038 22.704702139877007 26-27 22.824991764869335 27.448833923133947 26.911254783087347 22.814919528909375 28-29 22.882133697208968 27.409390119025723 26.92750090730102 22.78097527646429 30-31 23.172988678454438 27.17965004529303 26.865469374565855 22.78189190168668 32-33 22.938608036373967 27.327775462700153 26.84201708511497 22.89159941581091 34-35 23.116622568315453 27.359207624760817 26.8553806593985 22.668789147525235 36-37 23.135398580659242 27.188818345809796 26.811283409614706 22.864499663916256 38-39 22.884563978027746 27.412583383229048 26.937492682161906 22.765359956581296 40-41 23.09802777691868 27.176234274236176 26.966966420641608 22.758771528203535 42-43 22.862127865403707 27.29850767788207 26.835625607423513 23.003738849290706 44-45 22.84890582373048 27.255892369977687 26.906199527891662 22.989002278400168 46-47 22.91481146263664 27.20014832237053 26.849627710186773 23.035412504806054 48-49 22.90117255257878 27.297033572587488 26.868955700510572 22.93283817432316 50-51 22.84416042818188 27.343850254576292 26.874153968818128 22.937835348423704 52-53 23.066864719966354 27.239095244121568 26.75843675951054 22.93560327640153 54-55 23.047832954423477 27.16299872978039 26.799006152927284 22.990162162868852 56-57 22.991393074500117 27.312186079158003 26.78140250841321 22.915018337928675 58-59 22.865313236953632 27.318072451025376 26.924536167441616 22.89207814457938 60-61 23.00327683281725 27.235910552008093 26.83590918667955 22.924903428495107 62-63 22.980876589902515 27.31137811083606 26.88946106598662 22.818284233274802 64-65 23.032036126711308 27.19009591746809 26.844350586896194 22.933517368924406 66-67 23.00691492310217 27.29498866569499 26.700164046022163 22.997932365180677 68-69 22.913143841535057 27.246881342877582 26.8180044128227 23.021970402764662 70-71 22.918457943673808 27.062810700832486 26.879974704833188 23.138756650660525 72-73 22.924091642824415 27.114953062132557 26.791211326484703 23.16974396855832 74-75 22.749660034803824 27.220566548859903 26.880015308898898 23.149758107437375 76-77 22.916995392968918 27.234219915730908 26.77830707853514 23.070477612765036 78-79 22.77847538340072 27.228090988665492 26.83644435408542 23.156989273848367 80-81 22.8409760026946 27.24057040493789 26.854649682116005 23.063803910251508 82-83 22.937760133409974 27.16858344114264 27.00772407081326 22.88593235463412 84-85 22.908803412749172 27.222189983565737 26.901629899523456 22.967376704161634 86-87 22.735800499352614 27.375386576858734 26.932017272704023 22.956795651084626 88-89 22.885876398835826 27.224167673550504 26.8587743140348 23.03118161357887 90-91 22.82931361426822 27.304675257783227 26.91271799709623 22.953293130852327 92-93 22.923805992632115 27.301733193488886 26.962015818278275 22.81244499560072 94-95 22.642452476715036 27.468000388494474 27.008713227805437 22.880833906985053 96-97 22.703679959312623 27.59545285525517 27.01133091190158 22.68953627353062 98-99 23.89941715342441 29.544321660840467 27.088782463256333 19.46747872247879 100 22.751746731546206 30.593217236994196 20.843749485861558 25.81128654559804 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5038.0 1 3800.5 2 2693.5 3 2837.0 4 2772.5 5 2823.0 6 3223.5 7 3747.0 8 4194.5 9 4714.0 10 5303.5 11 5836.5 12 6401.0 13 7135.0 14 8136.0 15 9550.0 16 11398.5 17 13715.0 18 16615.5 19 20180.0 20 24751.5 21 30747.5 22 38688.0 23 49055.5 24 62525.0 25 79750.5 26 100915.0 27 123042.0 28 145328.5 29 172018.0 30 198363.5 31 222724.5 32 249983.0 33 277423.5 34 304056.0 35 328999.0 36 357393.5 37 384868.0 38 405044.0 39 423608.0 40 443610.0 41 460728.0 42 472609.5 43 487504.0 44 502090.5 45 519687.5 46 538067.0 47 555798.0 48 569308.0 49 570088.0 50 565933.0 51 562299.5 52 547187.0 53 520950.5 54 500300.5 55 480268.0 56 455437.5 57 423449.5 58 388453.0 59 348057.0 60 296353.0 61 249070.5 62 206211.0 63 167572.5 64 136979.0 65 107186.5 66 82980.0 67 63599.0 68 46962.0 69 35716.5 70 27684.5 71 21139.5 72 15962.5 73 11784.5 74 8727.0 75 6486.0 76 4952.0 77 3905.5 78 3140.5 79 2578.0 80 2069.0 81 1608.0 82 1239.5 83 806.0 84 502.0 85 361.5 86 286.0 87 221.5 88 143.5 89 93.5 90 70.0 91 56.5 92 46.0 93 26.5 94 12.0 95 8.5 96 10.0 97 9.5 98 5.5 99 13.5 100 48.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.4051554058943616E-4 6 0.0 7 0.0 8 2.3419256764906026E-5 9 0.0 10-11 2.7322466225723694E-5 12-13 8.977381759880643E-5 14-15 1.1709628382453013E-5 16-17 5.464493245144739E-5 18-19 0.0010070280408909591 20-21 5.11700060954805E-4 22-23 0.0 24-25 1.3308405385301038E-4 26-27 1.0581715297617405E-4 28-29 0.0 30-31 0.0 32-33 9.079587598815026E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.0671586427294653E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.8657685717886035E-4 76-77 1.935462674529742E-5 78-79 4.5048732935833754E-4 80-81 2.9746074125531108E-5 82-83 2.007855433204096E-5 84-85 3.3028987306350414E-4 86-87 7.718281490665665E-5 88-89 2.0859948237081447E-5 90-91 5.290356732457719E-6 92-93 5.371166685617933E-4 94-95 3.6578182042514766E-4 96-97 2.4558825811281273E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 6433.0 20-21 12337.0 22-23 13675.0 24-25 15260.0 26-27 19243.0 28-29 26600.0 30-31 39729.0 32-33 46972.0 34-35 60151.0 36-37 84852.0 38-39 94354.0 40-41 91069.0 42-43 97955.0 44-45 110284.0 46-47 111920.0 48-49 111043.0 50-51 107648.0 52-53 106305.0 54-55 113135.0 56-57 116435.0 58-59 116204.0 60-61 115309.0 62-63 112032.0 64-65 118115.0 66-67 122150.0 68-69 123525.0 70-71 120995.0 72-73 115947.0 74-75 117065.0 76-77 120716.0 78-79 125391.0 80-81 125597.0 82-83 121381.0 84-85 121790.0 86-87 127309.0 88-89 134718.0 90-91 141618.0 92-93 145917.0 94-95 172817.0 96-97 429279.0 98-99 755909.0 100-101 7840787.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.67419823390237 #Duplication Level Percentage of deduplicated Percentage of total 1 89.77140396598236 76.0132165515132 2 7.058160607579255 11.952881809057734 3 1.7497361105597546 4.44472506847662 4 0.6324017204427891 2.141924345609345 5 0.2904074975217261 1.2295011006883076 6 0.164136871519185 0.833889479790482 7 0.09117739944679391 0.540426123664667 8 0.06186171851221047 0.4190473133114222 9 0.040490663961716154 0.30856630562250126 >10 0.13583449208675347 1.7741110207499937 >50 0.0032760602343557444 0.18798342510637475 >100 0.0010966694915379707 0.14092512355177966 >500 1.6222661604140208E-5 0.012802332857610515 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.806418921635341E-6 2 0.0 5.4644932451447395E-5 0.0 0.0 7.806418921635341E-6 3 0.0 5.4644932451447395E-5 0.0 0.0 7.806418921635341E-6 4 0.0 1.0928986490289479E-4 0.0 7.806418921635341E-6 7.806418921635341E-6 5 0.0 1.5612837843270684E-4 0.0 1.5612837843270683E-5 7.806418921635341E-6 6 0.0 1.5612837843270684E-4 0.0 1.5612837843270683E-5 7.806418921635341E-6 7 0.0 1.717412162759775E-4 0.0 3.1225675686541366E-5 7.806418921635341E-6 8 0.0 1.9516047304088353E-4 0.0 3.1225675686541366E-5 7.806418921635341E-6 9 0.0 2.9664391902214297E-4 0.0 4.683851352981205E-5 7.806418921635341E-6 10-11 7.806418921635341E-6 2.9664391902214297E-4 0.0 6.63545608339004E-5 7.806418921635341E-6 12-13 7.806418921635341E-6 3.005471284829607E-4 0.0 7.806418921635342E-5 7.806418921635341E-6 14-15 7.806418921635341E-6 4.8009476368057356E-4 0.0 8.196739867717109E-5 7.806418921635341E-6 16-17 7.806418921635341E-6 4.918043920630266E-4 0.0 8.587060813798875E-5 7.806418921635341E-6 18-19 7.806418921635341E-6 5.386429055928385E-4 0.0 8.587060813798875E-5 1.5612837843270683E-5 20-21 7.806418921635341E-6 5.854814191226506E-4 0.0 1.1319307436371245E-4 1.9516047304088355E-5 22-23 7.806418921635341E-6 6.323199326524627E-4 0.0 1.873540541192482E-4 2.7322466225723698E-5 24-25 7.806418921635341E-6 6.791584461822747E-4 0.0 2.927407095613253E-4 3.903209460817671E-5 26-27 7.806418921635341E-6 7.103841218688161E-4 0.0 7.181905407904514E-4 4.683851352981205E-5 28-29 7.806418921635341E-6 7.103841218688161E-4 0.0 0.0031147611497325013 4.683851352981205E-5 30-31 7.806418921635341E-6 7.845451016243518E-4 0.0 0.010042957942683867 5.4644932451447395E-5 32-33 7.806418921635341E-6 7.962547300068048E-4 0.0 0.02693604848910275 6.63545608339004E-5 34-35 7.806418921635341E-6 9.406734800570587E-4 0.0 0.045987613867353797 7.025777029471808E-5 36-37 7.806418921635341E-6 0.001092898649028948 0.0 0.06630381911090977 7.025777029471808E-5 38-39 7.806418921635341E-6 0.0011436403720195775 0.0 0.08668637891529965 7.025777029471808E-5 40-41 7.806418921635341E-6 0.0013309944261388259 0.0 0.10411811236731136 7.025777029471808E-5 42-43 1.5612837843270683E-5 0.001385639358590273 0.0 0.12020323855534099 7.025777029471808E-5 44-45 1.5612837843270683E-5 0.0015573805748662507 0.0 0.13333363518153163 7.025777029471808E-5 46-47 2.3419256764906023E-5 0.0016939929059948693 0.0 0.1457185188007061 7.025777029471808E-5 48-49 3.1225675686541366E-5 0.0017017993249165047 0.0 0.1556599932974087 8.587060813798875E-5 50-51 3.1225675686541366E-5 0.001963314358791288 0.0 0.16493011576685068 8.587060813798875E-5 52-53 3.1225675686541366E-5 0.0019750239871737414 0.0 0.1731502748913327 9.367702705962409E-5 54-55 3.1225675686541366E-5 0.002002346453399465 0.0 0.18103085479272357 1.0148344598125944E-4 56-57 3.1225675686541366E-5 0.0020374753385468242 0.0 0.18851330732911104 1.0538665544207712E-4 58-59 3.5128885147359034E-5 0.002049184966929277 0.0 0.19590598604789972 1.1319307436371247E-4 60-61 3.903209460817671E-5 0.002099926689919907 0.0 0.2023970233812395 1.1709628382453013E-4 62-63 5.4644932451447395E-5 0.002146765203449719 0.0 0.20826745041030928 1.1709628382453013E-4 64-65 5.4644932451447395E-5 0.0023809577710987794 0.0 0.21248681983745318 1.1709628382453013E-4 66-67 5.4644932451447395E-5 0.002384860980559597 0.0 0.2161597399400826 1.2490270274616546E-4 68-69 5.4644932451447395E-5 0.002439505913011044 0.0 0.21961017710344544 1.327091216678008E-4 70-71 5.4644932451447395E-5 0.002478538007619221 0.0 0.22252197136121543 1.327091216678008E-4 72-73 5.4644932451447395E-5 0.0025136668927665798 0.0 0.22500050936883464 1.5612837843270684E-4 74-75 5.4644932451447395E-5 0.0025566021968355746 0.0 0.22714337136282353 1.5612837843270684E-4 76-77 5.4644932451447395E-5 0.002646376014434381 0.0 0.22922378200543936 1.5612837843270684E-4 78-79 5.4644932451447395E-5 0.0027088273658074638 0.0 0.23083190430329625 1.5612837843270684E-4 80-81 5.4644932451447395E-5 0.0027205369941899166 0.0 0.23164377187114632 1.6393479735434219E-4 82-83 5.4644932451447395E-5 0.002724440203650734 0.0 0.23218241477673915 1.873540541192482E-4 84-85 5.4644932451447395E-5 0.0027439562509548225 0.0 0.23243222018223147 1.9125726358006588E-4 86-87 5.4644932451447395E-5 0.0028064076023279053 0.0 0.23249467153360456 1.990636825017012E-4 88 5.4644932451447395E-5 0.0029664391902214297 0.0 0.23249857474306537 2.1077331088415423E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11095 0.0 41.19467 1 GTATCAA 19510 0.0 33.139687 1 TCAACGC 22110 0.0 27.940052 4 ATCAACG 22870 0.0 27.066319 3 CAACGCA 23095 0.0 26.676117 5 AACGCAG 23505 0.0 26.264076 6 TATCAAC 24520 0.0 25.704592 2 ACGCAGA 28210 0.0 21.824442 7 GTACATG 48135 0.0 21.591986 1 TACATGG 48515 0.0 20.941065 2 ACATGGG 49505 0.0 20.109142 3 CGCAGAG 31510 0.0 19.565292 8 CATGGGG 36540 0.0 18.071415 4 GTGGTAT 6980 0.0 17.102707 1 GCAGAGT 35970 0.0 16.826035 9 TGGTATC 6685 0.0 16.171583 2 AGAGTAC 30400 0.0 15.934035 10-11 CAGAGTA 34150 0.0 15.308803 10-11 ATGGGGG 19595 0.0 14.378471 5 ATGGGGA 18675 0.0 13.857514 5 >>END_MODULE