##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140235_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9903401 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.77268960430866 33.0 31.0 34.0 30.0 34.0 2 31.845027682914182 33.0 31.0 34.0 30.0 34.0 3 31.969527337123882 34.0 31.0 34.0 30.0 34.0 4 35.44034458465329 37.0 35.0 37.0 33.0 37.0 5 35.51089105651685 37.0 35.0 37.0 33.0 37.0 6 35.533049201986266 37.0 35.0 37.0 33.0 37.0 7 35.46404704807975 37.0 35.0 37.0 33.0 37.0 8 35.45046868242536 37.0 35.0 37.0 33.0 37.0 9 37.02393803906355 39.0 37.0 39.0 33.0 39.0 10-11 36.99971368421818 39.0 37.0 39.0 33.0 39.0 12-13 36.93930473985654 39.0 37.0 39.0 33.0 39.0 14-15 38.29753924939523 40.0 38.0 41.0 33.0 41.0 16-17 38.3131335386702 40.0 38.0 41.0 33.0 41.0 18-19 38.324962454817296 40.0 38.0 41.0 33.0 41.0 20-21 38.39590696408548 40.0 38.0 41.0 33.0 41.0 22-23 38.38207885469251 40.0 38.0 41.0 33.0 41.0 24-25 38.395405529547716 40.0 38.0 41.0 33.0 41.0 26-27 38.38196681023618 40.0 38.0 41.0 33.0 41.0 28-29 38.36058938051316 40.0 38.0 41.0 33.0 41.0 30-31 38.31202077246992 40.0 38.0 41.0 33.0 41.0 32-33 38.27374986321614 40.0 38.0 41.0 33.0 41.0 34-35 38.2120717032402 40.0 38.0 41.0 33.0 41.0 36-37 38.149987902781724 40.0 38.0 41.0 33.0 41.0 38-39 38.06490426486127 40.0 38.0 41.0 32.5 41.0 40-41 37.99098025086653 40.0 37.5 41.0 32.0 41.0 42-43 37.89359847920766 40.0 37.0 41.0 32.0 41.0 44-45 37.751750293185765 40.0 37.0 41.0 32.0 41.0 46-47 37.63983808272886 40.0 37.0 41.0 31.5 41.0 48-49 37.53179742045621 40.0 36.0 41.0 31.0 41.0 50-51 37.3828727100789 40.0 36.0 41.0 31.0 41.0 52-53 37.248804453874 39.0 36.0 41.0 31.0 41.0 54-55 37.09464915438221 39.0 35.5 41.0 31.0 41.0 56-57 36.90637369316872 39.0 35.0 40.5 30.0 41.0 58-59 37.0458489837777 39.0 35.0 40.5 31.0 41.0 60-61 37.09935618721275 39.0 35.0 41.0 31.0 41.0 62-63 36.92698750015094 39.0 35.0 40.5 31.0 41.0 64-65 36.707726566074406 38.0 35.0 40.0 31.0 41.0 66-67 36.42440655621144 37.5 35.0 40.0 31.0 41.0 68-69 36.14396064796991 37.0 35.0 40.0 30.5 41.0 70-71 35.90611362715478 36.5 34.0 39.0 30.0 41.0 72-73 35.67054163819948 36.0 34.0 39.0 30.0 41.0 74-75 35.40792485522102 36.0 34.0 39.0 30.0 40.5 76-77 35.17128284582162 35.0 34.0 37.5 30.0 40.0 78-79 34.88498143776667 35.0 34.0 37.0 30.0 39.0 80-81 34.61540857895959 35.0 34.0 37.0 30.0 39.0 82-83 34.370224197050455 35.0 34.0 36.0 30.0 38.5 84-85 34.16800114022875 35.0 34.0 36.0 30.0 37.0 86-87 33.99752170383587 35.0 34.0 36.0 30.0 37.0 88-89 33.86731265868345 35.0 34.0 35.0 30.0 36.5 90-91 33.77025452376331 35.0 34.0 35.0 30.0 36.0 92-93 33.689787202067926 35.0 34.0 35.0 30.0 36.0 94-95 33.66633696523618 35.0 34.0 35.0 30.0 36.0 96-97 33.67494962190899 35.0 34.0 35.0 30.0 36.0 98-99 33.7089228047697 35.0 34.0 35.0 30.0 35.0 100 33.374256496777065 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 4.0 16 62.0 17 418.0 18 1492.0 19 4344.0 20 11126.0 21 22592.0 22 36885.0 23 52863.0 24 69147.0 25 85682.0 26 98909.0 27 106036.0 28 122458.0 29 150029.0 30 175484.0 31 202308.0 32 255011.0 33 331787.0 34 451141.0 35 635242.0 36 990886.0 37 1798109.0 38 2548994.0 39 1652501.0 40 99889.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.49679488894775 20.095338964866716 14.340750212982389 24.067115933203148 2 14.440594700749774 20.72769748493472 41.65019673544472 23.181511078870784 3 18.01908253538355 25.856612289051007 30.177016966191715 25.94728820937373 4 12.63851680851861 17.706058756986614 38.605081224116844 31.050343210377928 5 13.663430601095545 37.89643014953272 35.085370818701975 13.354768430669758 6 30.40762461299911 37.10024465332667 19.05970484281107 13.432425890863147 7 27.19017436535186 32.46242376735023 22.823007974735145 17.524393892562767 8 24.829349028682167 36.356166936994676 21.0479511028585 17.766532931464653 9 25.83272150648045 17.418965464490434 21.119835498936173 35.628477530092944 10-11 24.372353150047115 26.776305449457027 28.644355910311404 20.206985490184458 12-13 24.93935663047132 24.465791565737433 28.503898311194618 22.090953492596626 14-15 22.371176154445987 25.81457020179186 25.965952593541765 25.84830105022039 16-17 22.237714108459 28.872395437845945 26.604101907710003 22.285788545985053 18-19 22.339451861888154 28.49533494215619 27.637293279911447 21.527919916044205 20-21 23.40942337434616 27.575782113520354 27.256596640376774 21.758197871756714 22-23 23.12447579709172 27.396188615182293 27.024924559265155 22.45441102846083 24-25 22.74540283345498 27.627311686270318 27.167694948450325 22.459590531824375 26-27 22.5916029805667 27.733973336585137 27.137046707337518 22.53737697551064 28-29 22.627051273677203 27.724412352613992 27.181584756362504 22.466951617346304 30-31 22.915764936164088 27.56082144709372 27.031844055734926 22.491569561007267 32-33 22.673774992054526 27.71675907754775 27.03045546826719 22.57901046213054 34-35 22.814923131964022 27.7141086625518 27.07587144921187 22.395096756272306 36-37 22.804137189190257 27.494620600599813 27.093300327887203 22.60794188232273 38-39 22.601113984883632 27.68415309412674 27.223304765181773 22.491428155807856 40-41 22.849372964082676 27.4593328026352 27.184928256585657 22.506365976696465 42-43 22.640125226124194 27.52860392526837 27.090576454415732 22.740694394191703 44-45 22.639997853593893 27.55239924510982 27.131458678076836 22.67614422321945 46-47 22.7142062210328 27.464470881272845 27.08659888553181 22.734724012162545 48-49 22.61161485845465 27.50961959331536 27.15430787570999 22.72445767252 50-51 22.581532592592353 27.5596556874883 27.155892207761195 22.702919512158154 52-53 22.74673969973988 27.494866925172644 27.053405984956186 22.704987390131294 54-55 22.79325583104024 27.353809632208886 27.092122352645337 22.760812184105532 56-57 22.745188793196792 27.48489300980166 27.07509258308634 22.694825613915206 58-59 22.64796333993171 27.515582688739453 27.17250533424264 22.663948637086197 60-61 22.732656988734153 27.47265693031766 27.131590532702837 22.663095548245348 62-63 22.758573526772498 27.546016898444904 27.064224111347052 22.631185463435553 64-65 22.732943282459775 27.4638766876212 27.06170248484993 22.741477545069092 66-67 22.8252756818489 27.547080313993067 26.901579332668696 22.726064671489336 68-69 22.696605247270256 27.482035901116888 27.070771187545617 22.75058766406724 70-71 22.695846953775394 27.273966479757703 27.135664047917267 22.894522518549635 72-73 22.77412703523765 27.368331036615682 27.01341230910166 22.84412961904501 74-75 22.556369672626445 27.494136024677296 27.1040416127103 22.845452689985965 76-77 22.73057444285712 27.398469599627322 27.04861408012912 22.82234187738644 78-79 22.598122036455212 27.468461090817662 27.027446087183087 22.905970785544035 80-81 22.676444654221463 27.496274896530608 27.00024036237355 22.82704008687438 82-83 22.717339821784172 27.431872890468412 27.15987122720731 22.690916060540108 84-85 22.746435027127088 27.477215626644757 27.05377705391518 22.722572292312975 86-87 22.561362661177185 27.540905665494787 27.153386371123588 22.744345302204437 88-89 22.660798889762326 27.479367806522646 27.065188464559302 22.79464483915572 90-91 22.62164858856363 27.55986027975399 27.120446937224795 22.698044194457584 92-93 22.70151002713867 27.532798061741698 27.140645284976898 22.62504662614273 94-95 22.514361831812916 27.633686798910084 27.17748453059004 22.674466838686957 96-97 22.596533050617364 27.724393134739145 27.198860702857125 22.480213111786366 98-99 23.672949367366815 29.71939536713233 27.32187566996342 19.285779595537438 100 22.602284662809833 30.73261516392965 21.066240519200676 25.59885965405984 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3864.0 1 2992.0 2 2340.0 3 2543.0 4 2537.5 5 2705.0 6 3090.0 7 3552.0 8 3929.5 9 4369.0 10 4963.0 11 5513.5 12 6112.5 13 6892.0 14 7800.0 15 8931.5 16 10442.5 17 12300.5 18 14509.0 19 17241.0 20 20834.5 21 25785.5 22 32413.0 23 40696.0 24 51214.0 25 65123.0 26 83056.5 27 101893.0 28 120739.5 29 142895.5 30 164644.5 31 185351.0 32 208111.5 33 230472.5 34 252518.0 35 273621.0 36 296492.5 37 318463.5 38 333172.0 39 344706.5 40 359878.5 41 373466.5 42 381860.0 43 391398.0 44 401091.0 45 412727.5 46 421217.0 47 425489.0 48 429466.0 49 429158.5 50 425928.5 51 419793.5 52 407406.5 53 388372.5 54 367796.0 55 348843.5 56 327800.5 57 300551.5 58 271644.0 59 241813.5 60 207570.0 61 173630.0 62 141677.5 63 113088.5 64 89729.0 65 70544.5 66 54996.5 67 42495.5 68 32489.0 69 25115.5 70 19338.0 71 14291.0 72 10547.5 73 7753.0 74 5711.5 75 4209.0 76 3160.0 77 2431.5 78 1860.0 79 1438.5 80 1075.5 81 787.0 82 600.5 83 419.0 84 305.0 85 228.5 86 171.0 87 132.0 88 79.5 89 47.0 90 38.0 91 30.5 92 22.0 93 17.0 94 13.0 95 10.5 96 10.5 97 8.0 98 4.5 99 7.0 100 21.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.7165820105638456E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.5146311857916285E-5 12-13 1.0097541238610857E-4 14-15 3.5341394335138E-5 16-17 9.087787114749772E-5 18-19 9.491688764294206E-4 20-21 4.7483330446447867E-4 22-23 0.0 24-25 1.0624040990585583E-4 26-27 1.7724195116447454E-4 28-29 0.0 30-31 0.0 32-33 9.176672978858169E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 4.906722389586888E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.103497392312843E-4 76-77 1.877914405788133E-5 78-79 4.625567004221115E-4 80-81 3.208252755391838E-5 82-83 3.2485557733170776E-5 84-85 5.261876350904537E-4 86-87 1.132317041045094E-4 88-89 2.6997309920546243E-5 90-91 0.0 92-93 6.668275388104046E-4 94-95 4.1622190299334805E-4 96-97 3.313742153544836E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3539.0 20-21 6701.0 22-23 7820.0 24-25 9029.0 26-27 12588.0 28-29 18788.0 30-31 29484.0 32-33 34598.0 34-35 45270.0 36-37 65329.0 38-39 72776.0 40-41 70755.0 42-43 76020.0 44-45 85586.0 46-47 87306.0 48-49 85894.0 50-51 83269.0 52-53 83208.0 54-55 90177.0 56-57 91981.0 58-59 90222.0 60-61 89423.0 62-63 87337.0 64-65 91850.0 66-67 96470.0 68-69 96259.0 70-71 94782.0 72-73 92192.0 74-75 93392.0 76-77 95648.0 78-79 98501.0 80-81 97672.0 82-83 94121.0 84-85 94607.0 86-87 97274.0 88-89 102309.0 90-91 106232.0 92-93 108113.0 94-95 126094.0 96-97 321033.0 98-99 575461.0 100-101 6094291.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.50841743963046 #Duplication Level Percentage of deduplicated Percentage of total 1 90.42339777518474 77.3196164327025 2 6.692694379312113 11.445634095641774 3 1.5699902423554397 4.027421430584266 4 0.5857126980189186 2.0033346352757566 5 0.26865005917385604 1.1485920702509753 6 0.14967378529708442 0.7679021107771631 7 0.08557151926912553 0.5121959633425438 8 0.05117059824265686 0.3500413500134979 9 0.03675712197696224 0.28287389968969523 >10 0.131974695615259 1.817712761456875 >50 0.003372444853173067 0.1970429239180337 >100 0.0010346807006542474 0.12763232634705432 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.058524743166514E-5 0.0 0.0 0.0 3 0.0 6.058524743166514E-5 0.0 0.0 0.0 4 0.0 1.2117049486333028E-4 0.0 1.0097541238610857E-5 1.0097541238610857E-5 5 0.0 1.2117049486333028E-4 0.0 2.0195082477221713E-5 1.0097541238610857E-5 6 0.0 1.3126803610194113E-4 0.0 2.0195082477221713E-5 2.0195082477221713E-5 7 0.0 1.615606598177737E-4 0.0 2.0195082477221713E-5 2.0195082477221713E-5 8 0.0 1.9185328353360628E-4 0.0 2.0195082477221713E-5 2.0195082477221713E-5 9 0.0 3.9380410830582344E-4 0.0 2.0195082477221713E-5 2.0195082477221713E-5 10-11 2.0195082477221713E-5 3.9380410830582344E-4 0.0 3.029262371583257E-5 2.0195082477221713E-5 12-13 4.0390164954443427E-5 3.9380410830582344E-4 0.0 3.029262371583257E-5 2.524385309652714E-5 14-15 4.0390164954443427E-5 5.3012091502707E-4 0.0 5.048770619305428E-5 4.0390164954443427E-5 16-17 4.543893557374885E-5 5.452672268849863E-4 0.0 7.0682788670276E-5 4.0390164954443427E-5 18-19 5.048770619305428E-5 5.705110799815135E-4 0.0 1.1107295362471943E-4 4.543893557374885E-5 20-21 5.048770619305428E-5 6.310963274131786E-4 0.0 1.5146311857916286E-4 5.5536476812359715E-5 22-23 5.048770619305428E-5 7.472180516572034E-4 0.0 2.5243853096527144E-4 9.087787114749772E-5 24-25 6.563401805097056E-5 8.784860877591445E-4 0.0 4.745844382147103E-4 1.1107295362471943E-4 26-27 7.0682788670276E-5 9.18876252713588E-4 0.0 0.0011814123249174703 1.1107295362471943E-4 28-29 7.0682788670276E-5 9.239250233328935E-4 0.0 0.005639476781764163 1.1107295362471943E-4 30-31 7.0682788670276E-5 0.001095583224389278 0.0 0.018816768098151332 1.1107295362471943E-4 32-33 7.0682788670276E-5 0.0011056807656278887 0.0 0.048978123777881966 1.1107295362471943E-4 34-35 9.592664176680314E-5 0.0013126803610194115 0.0 0.0808207200738413 1.2117049486333028E-4 36-37 1.2117049486333028E-4 0.0015398750388881557 0.0 0.1158743344836789 1.2117049486333028E-4 38-39 1.2117049486333028E-4 0.001580265203842599 0.0 0.147035346746032 1.2117049486333028E-4 40-41 1.2117049486333028E-4 0.0017872647992341216 0.0 0.1734555633968573 1.2117049486333028E-4 42-43 1.2117049486333028E-4 0.001837752505427176 0.0 0.19737663859112642 1.2117049486333028E-4 44-45 1.3126803610194113E-4 0.0021154348894889745 0.0 0.21434050787199266 1.2117049486333028E-4 46-47 1.4641434795985742E-4 0.0023426295673577187 0.0 0.2281337492039351 1.3126803610194113E-4 48-49 1.5146311857916286E-4 0.0023426295673577187 0.0 0.23803943715901232 1.41365577340552E-4 50-51 1.5146311857916286E-4 0.002605165639561601 0.0 0.24603668981999216 1.41365577340552E-4 52-53 1.565118891984683E-4 0.002640507033896739 0.0 0.25189326373838644 1.565118891984683E-4 54-55 1.615606598177737E-4 0.0026556533457546554 0.0 0.25713893641184477 1.7670697167569E-4 56-57 1.615606598177737E-4 0.0027061410519477096 0.0 0.26232402383787146 1.8680451291430087E-4 58-59 1.615606598177737E-4 0.002721287363805626 0.0 0.2674687210989437 1.9185328353360628E-4 60-61 1.615606598177737E-4 0.0027515799875214584 0.0 0.27197222449136416 1.9185328353360628E-4 62-63 1.615606598177737E-4 0.002807116464333818 0.0 0.27635455738892123 2.12048366010828E-4 64-65 1.615606598177737E-4 0.0031201402427307547 0.0 0.2799492820698667 2.12048366010828E-4 66-67 1.615606598177737E-4 0.0031201402427307547 0.0 0.28339759240285234 2.12048366010828E-4 68-69 1.7165820105638456E-4 0.0032009205726396418 0.0 0.2870629998724681 2.12048366010828E-4 70-71 1.7165820105638456E-4 0.0032463595082133905 0.0 0.29024372536263043 2.12048366010828E-4 72-73 1.7165820105638456E-4 0.003261505820071307 0.0 0.29300035412077124 2.322434484880497E-4 74-75 1.7165820105638456E-4 0.0033725787736960263 0.0 0.2953126910644131 2.4234098972666056E-4 76-77 1.7165820105638456E-4 0.0035644320572296327 0.0 0.297625028008055 2.4234098972666056E-4 78-79 1.7165820105638456E-4 0.0036452123871385193 0.0 0.29932646370676097 2.4234098972666056E-4 80-81 1.7165820105638456E-4 0.0036502611577578247 0.0 0.3001494133177077 2.4738976034596597E-4 82-83 1.7165820105638456E-4 0.0036603586989964357 0.0 0.3007704121038823 2.5243853096527144E-4 84-85 1.7165820105638456E-4 0.003685602552092963 0.0 0.301012753093609 2.5243853096527144E-4 86-87 1.7165820105638456E-4 0.0038118218175755983 0.0 0.30113392358847224 2.5748730158457685E-4 88 1.7165820105638456E-4 0.004018821412967121 0.0 0.3011490699003302 2.6253607220388226E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8750 0.0 40.99056 1 GTATCAA 15375 0.0 33.279045 1 TCAACGC 17445 0.0 28.012257 4 ATCAACG 18050 0.0 26.980705 3 CAACGCA 18110 0.0 26.914398 5 AACGCAG 18405 0.0 26.505718 6 TATCAAC 19100 0.0 26.197832 2 ACGCAGA 21815 0.0 22.26668 7 GTACATG 36480 0.0 21.359724 1 CGCAGAG 23090 0.0 21.055246 8 TACATGG 36595 0.0 20.892794 2 ACATGGG 37170 0.0 19.996029 3 CATGGGG 27870 0.0 17.80403 4 GCAGAGT 27510 0.0 17.414001 9 AGAGTAC 23650 0.0 15.9345255 10-11 CAGAGTA 26795 0.0 15.374726 10-11 ATGGGGG 15445 0.0 14.831913 5 GTGGTAT 5750 0.0 14.321975 1 GTATAGG 2880 0.0 14.224538 1 GAGTACA 27445 0.0 13.30501 12-13 >>END_MODULE