##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140234_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12136593 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.77832609200951 33.0 31.0 34.0 30.0 34.0 2 31.86119514760032 33.0 31.0 34.0 30.0 34.0 3 31.987698442223447 34.0 31.0 34.0 30.0 34.0 4 35.46530150594982 37.0 35.0 37.0 33.0 37.0 5 35.53806789104652 37.0 35.0 37.0 33.0 37.0 6 35.557631948274114 37.0 35.0 37.0 33.0 37.0 7 35.49081006506521 37.0 35.0 37.0 33.0 37.0 8 35.4762018467621 37.0 35.0 37.0 33.0 37.0 9 37.057603398251885 39.0 37.0 39.0 33.0 39.0 10-11 37.03689878205523 39.0 37.0 39.0 33.0 39.0 12-13 36.98004320487636 39.0 37.0 39.0 33.0 39.0 14-15 38.338564167060724 40.0 38.0 41.0 33.0 41.0 16-17 38.34724423897217 40.0 38.0 41.0 33.0 41.0 18-19 38.355520202415946 40.0 38.0 41.0 33.0 41.0 20-21 38.42147445633062 40.0 38.0 41.0 33.0 41.0 22-23 38.40385295609612 40.0 38.0 41.0 33.0 41.0 24-25 38.414548621405174 40.0 38.0 41.0 33.0 41.0 26-27 38.40148348052645 40.0 38.0 41.0 33.0 41.0 28-29 38.375960208254895 40.0 38.0 41.0 33.0 41.0 30-31 38.32631784036643 40.0 38.0 41.0 33.0 41.0 32-33 38.28774984976456 40.0 38.0 41.0 33.0 41.0 34-35 38.22677696016093 40.0 38.0 41.0 33.0 41.0 36-37 38.16471156065051 40.0 38.0 41.0 33.0 41.0 38-39 38.083269919149586 40.0 38.0 41.0 33.0 41.0 40-41 38.0092043843544 40.0 37.5 41.0 32.0 41.0 42-43 37.91141745070932 40.0 37.0 41.0 32.0 41.0 44-45 37.77058544200554 40.0 37.0 41.0 32.0 41.0 46-47 37.66057004726436 40.0 37.0 41.0 32.0 41.0 48-49 37.55203382310161 40.0 36.5 41.0 31.0 41.0 50-51 37.40958555587996 40.0 36.0 41.0 31.0 41.0 52-53 37.280218416560345 39.0 36.0 41.0 31.0 41.0 54-55 37.1287311508964 39.0 35.5 41.0 31.0 41.0 56-57 36.939837613014035 39.0 35.0 40.5 30.5 41.0 58-59 37.08699724358125 39.0 35.0 40.5 31.0 41.0 60-61 37.14564478058075 39.0 35.0 41.0 31.0 41.0 62-63 36.9750935885677 39.0 35.0 40.5 31.0 41.0 64-65 36.760522295044694 38.0 35.0 40.0 31.0 41.0 66-67 36.48104710881006 38.0 35.0 40.0 31.0 41.0 68-69 36.200877091420544 37.0 35.0 40.0 31.0 41.0 70-71 35.96446002593865 37.0 34.0 39.5 30.5 41.0 72-73 35.72911648287675 36.0 34.0 39.0 30.0 41.0 74-75 35.465798532263165 36.0 34.0 39.0 30.0 40.5 76-77 35.22929154189099 35.5 34.0 38.5 30.0 40.0 78-79 34.936645885322534 35.0 34.0 37.0 30.0 39.0 80-81 34.66213387308099 35.0 34.0 37.0 30.0 39.0 82-83 34.41058736467336 35.0 34.0 36.0 30.0 39.0 84-85 34.2008641186426 35.0 34.0 36.0 30.0 37.0 86-87 34.02413240244597 35.0 34.0 36.0 30.0 37.0 88-89 33.88977237211908 35.0 34.0 35.0 30.0 37.0 90-91 33.78686210214376 35.0 34.0 35.0 30.0 36.0 92-93 33.701518328738175 35.0 34.0 35.0 30.0 36.0 94-95 33.677596135846144 35.0 34.0 35.0 30.0 36.0 96-97 33.68123885311732 35.0 34.0 35.0 30.0 36.0 98-99 33.71558531073126 35.0 34.0 35.0 30.0 35.5 100 33.37569444490901 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 6.0 16 80.0 17 453.0 18 1675.0 19 4932.0 20 13010.0 21 26466.0 22 42996.0 23 61475.0 24 80970.0 25 101452.0 26 118051.0 27 126286.0 28 146843.0 29 180617.0 30 212241.0 31 248492.0 32 314509.0 33 408419.0 34 554373.0 35 777006.0 36 1208391.0 37 2197511.0 38 3158929.0 39 2035206.0 40 116202.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3032636094825 20.315816802952856 14.30021588430954 24.080703703255107 2 14.284865612614677 20.861348815108162 41.84296202402108 23.010823548256088 3 17.84965517093636 26.045324252036796 30.416130787281077 25.688889789745772 4 12.496324133140165 17.91036413596468 39.025482686945175 30.567829043949978 5 13.457474932581864 38.02411735571769 35.402231816548515 13.116175895151933 6 30.05212418345082 37.49099932740597 19.199490334725734 13.257386154417471 7 26.783282590097567 32.64189546440257 23.16023945105517 17.414582494444694 8 24.51038149754066 36.587149011847806 21.31620639467818 17.586263095933354 9 25.60536552556389 17.483481566861474 21.364636681810126 35.54651622576451 10-11 24.12417198196544 26.865115656696386 29.012473976929183 19.998238384408992 12-13 24.710510509941415 24.530620465954144 28.847936204106254 21.910932819998187 14-15 22.141933312882774 26.022138678691135 26.20308740834635 25.632840600079742 16-17 22.012270177243494 28.997375784827707 26.87541491298085 22.11493912494796 18-19 22.089092762856826 28.671198076146332 27.87295964214977 21.366749518847072 20-21 23.114671054448422 27.778079584325827 27.521028336887003 21.58622102433875 22-23 22.854578987738 27.60600747703131 27.308408548329705 22.231004986900988 24-25 22.459793855282644 27.83022201089334 27.392915694636372 22.317068439187636 26-27 22.385755754686755 27.944230502685212 27.355489129525456 22.31452461310257 28-29 22.3961363847896 27.94405617547597 27.38108938229728 22.27871805743715 30-31 22.672034436627673 27.779817806696034 27.269796760478293 22.278350996198 32-33 22.430721158688197 27.945270664108474 27.253503736350286 22.370504440853047 34-35 22.5846653729485 27.88711909263154 27.293433841540033 22.234781692879928 36-37 22.529111675246032 27.732518746198963 27.36273685452762 22.375632724027387 38-39 22.37148174484599 27.863539673738245 27.483230293063198 22.281748288352563 40-41 22.620321296381505 27.661919167174165 27.420049146404335 22.29771039004 42-43 22.408766158103425 27.743361207303586 27.34900938558791 22.49886324900508 44-45 22.471058208172963 27.752752678260855 27.351425002721086 22.424764110845093 46-47 22.46428467577658 27.699650521153735 27.293943556493566 22.542121246576123 48-49 22.36102900518841 27.723898183667384 27.42378331176456 22.491289499379647 50-51 22.343728478962262 27.778195715206966 27.36816141631109 22.509914389519682 52-53 22.51296408596266 27.72719060499694 27.248303672796485 22.511541636243912 54-55 22.52358624201912 27.568776698397922 27.34257722740517 22.565059832177788 56-57 22.477426712747828 27.663171785370167 27.338614084622144 22.520787417259857 58-59 22.456366925786746 27.72108907003291 27.366771401064092 22.45577260311625 60-61 22.553381151460986 27.633777174401253 27.34983047256465 22.463011201573117 62-63 22.562133885439142 27.750905951408022 27.286571324280455 22.400388838872377 64-65 22.524691682352184 27.684037866422777 27.27933398846548 22.511936462759557 66-67 22.552521396894562 27.744736813033484 27.164634688161787 22.53810710191017 68-69 22.45865356009791 27.660945758498627 27.30831106307909 22.57208961832437 70-71 22.511683272624865 27.45846183732995 27.355111370021167 22.674743520024013 72-73 22.60415552490104 27.521097189612227 27.256116478137425 22.61863080734931 74-75 22.34836576538203 27.685833682336376 27.317401155849787 22.64839939643181 76-77 22.543981557721178 27.611800537628305 27.25119953867832 22.593018365972192 78-79 22.461706571895775 27.64234124995007 27.239520286786757 22.656431891367404 80-81 22.505517081770588 27.696155090883906 27.229838930082646 22.568488897262856 82-83 22.50221431596315 27.63537175894389 27.363081352786704 22.49933257230625 84-85 22.579238795934266 27.676378167799754 27.23873982472515 22.505643211540832 86-87 22.40587864931359 27.718604991524764 27.34005412501961 22.535462234142035 88-89 22.441976343892073 27.676241543372015 27.324453952949934 22.557328159785982 90-91 22.45660796775144 27.775934459325896 27.318397548267537 22.449060024655125 92-93 22.500703956931016 27.713328935806654 27.355684302996643 22.430282804265687 94-95 22.34365735015139 27.825114102653416 27.35826520282349 22.472963344371706 96-97 22.399853490461176 27.954175019830046 27.387701219419462 22.258270270289312 98-99 23.479498138785626 29.893933385506127 27.54724166161486 19.07932681409339 100 22.45869254435463 30.844840239037698 21.287827956010965 25.40863926059671 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4615.0 1 3484.0 2 2562.5 3 2730.5 4 2671.0 5 2855.0 6 3347.5 7 3908.0 8 4362.0 9 4903.0 10 5617.5 11 6244.5 12 6870.0 13 7650.0 14 8631.5 15 10070.0 16 11908.5 17 14136.0 18 16971.5 19 20670.0 20 25598.0 21 32206.5 22 41126.5 23 52208.5 24 65990.5 25 84214.0 26 107636.0 27 132721.0 28 158225.0 29 186761.5 30 214050.5 31 240610.0 32 270255.5 33 298757.0 34 326535.5 35 352088.0 36 379719.5 37 407551.5 38 424962.0 39 436775.0 40 452112.5 41 466716.0 42 477084.5 43 488404.0 44 498055.5 45 508091.5 46 513887.5 47 515043.0 48 516666.0 49 514154.5 50 508419.5 51 498661.5 52 482836.0 53 460432.0 54 435809.0 55 410419.0 56 382529.0 57 350750.0 58 317328.5 59 282001.5 60 239533.5 61 196644.0 62 158656.5 63 125254.0 64 97061.0 65 75391.0 66 58438.5 67 45303.5 68 35140.0 69 26783.0 70 20454.5 71 15403.0 72 11455.0 73 8299.0 74 6038.0 75 4517.5 76 3449.5 77 2667.5 78 2076.5 79 1635.0 80 1266.0 81 961.0 82 746.5 83 515.0 84 354.5 85 270.5 86 217.0 87 169.5 88 105.0 89 61.5 90 45.0 91 40.5 92 32.5 93 22.5 94 14.0 95 10.0 96 10.0 97 7.5 98 2.5 99 6.0 100 25.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 1.8126998244070639E-4 6 0.0 7 0.0 8 8.239544656395745E-6 9 0.0 10-11 5.3557040266572346E-5 12-13 1.029943082049468E-4 14-15 4.9437267938374464E-5 16-17 9.887453587674893E-5 18-19 9.805058141110936E-4 20-21 3.7920314745207225E-4 22-23 0.0 24-25 9.080529520347444E-5 26-27 1.776437563507643E-4 28-29 0.0 30-31 0.0 32-33 5.4035818931124946E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 3.9897369779196434E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.911423046409955E-4 76-77 1.5271504441717066E-5 78-79 4.7935011258027054E-4 80-81 4.176540486939723E-5 82-83 3.701320758148934E-5 84-85 4.6043875423048186E-4 86-87 1.3014194202035496E-4 88-89 2.7479104339478174E-5 90-91 0.0 92-93 6.902322908883284E-4 94-95 3.9660731754295904E-4 96-97 3.699129048872893E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 4029.0 20-21 7568.0 22-23 8796.0 24-25 10228.0 26-27 14211.0 28-29 20761.0 30-31 33123.0 32-33 38764.0 34-35 50898.0 36-37 74577.0 38-39 84275.0 40-41 83354.0 42-43 90946.0 44-45 102453.0 46-47 104876.0 48-49 103645.0 50-51 101222.0 52-53 101667.0 54-55 109388.0 56-57 111596.0 58-59 110177.0 60-61 109710.0 62-63 107470.0 64-65 113366.0 66-67 118790.0 68-69 119269.0 70-71 117966.0 72-73 114491.0 74-75 116765.0 76-77 120844.0 78-79 123141.0 80-81 122401.0 82-83 117880.0 84-85 117173.0 86-87 121703.0 88-89 126874.0 90-91 131188.0 92-93 135274.0 94-95 157954.0 96-97 396246.0 98-99 707399.0 100-101 7474135.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.28182734162169 #Duplication Level Percentage of deduplicated Percentage of total 1 89.5656753309091 75.48758783975427 2 7.0646788683385555 11.90848089210627 3 1.8289814517028653 4.624496967703486 4 0.6988774923534742 2.356106885739242 5 0.3205780870465997 1.3509453490984444 6 0.17603676738201152 0.890202026056075 7 0.10083495756844667 0.59489881386485 8 0.0643949701097139 0.43418606019646383 9 0.044340440394934226 0.3363384007455584 >10 0.13180809160013013 1.7297863002085725 >50 0.0031855864542061642 0.1797568301063549 >100 5.744678847827592E-4 0.08390113254076922 >500 1.6746363886607402E-5 0.00811563136072333 >1k 1.674189125811363E-5 0.015196870518944562 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.239544656395745E-6 0.0 0.0 0.0 3 0.0 8.239544656395745E-6 0.0 0.0 0.0 4 0.0 4.119772328197872E-5 0.0 0.0 0.0 5 0.0 6.591635725116596E-5 0.0 2.4718633969187236E-5 0.0 6 4.943726793837447E-5 6.591635725116596E-5 0.0 3.295817862558298E-5 0.0 7 6.591635725116596E-5 7.415590190756171E-5 0.0 4.119772328197872E-5 0.0 8 6.591635725116596E-5 8.239544656395744E-5 0.0 4.119772328197872E-5 0.0 9 8.239544656395744E-5 1.8950952709710214E-4 0.0 4.943726793837447E-5 8.239544656395745E-6 10-11 9.063499122035319E-5 1.9774907175349788E-4 0.0 9.475476354855107E-5 8.239544656395745E-6 12-13 9.063499122035319E-5 1.9774907175349788E-4 0.0 1.029943082049468E-4 8.239544656395745E-6 14-15 9.063499122035319E-5 3.666597372096106E-4 0.0 1.1535362518954041E-4 1.647908931279149E-5 16-17 1.3183271450233191E-4 4.119772328197872E-4 0.0 1.2771294217413405E-4 2.4718633969187236E-5 18-19 1.3183271450233191E-4 4.53174956101766E-4 0.0 1.5655134847151916E-4 2.4718633969187236E-5 20-21 1.3595248683052978E-4 4.8613313472734894E-4 0.0 1.8538975476890427E-4 2.4718633969187236E-5 22-23 1.4419203148692555E-4 5.602890366349107E-4 0.0 3.1310269694303827E-4 2.8838406297385107E-5 24-25 1.5655134847151914E-4 6.46804255527066E-4 0.0 6.385647108706702E-4 4.943726793837447E-5 26-27 1.8950952709710214E-4 6.838822064808468E-4 0.0 0.0014913575828076299 4.943726793837447E-5 28-29 1.8950952709710214E-4 6.838822064808468E-4 0.0 0.006583396180460201 4.943726793837447E-5 30-31 1.936292994253E-4 7.456787914038149E-4 0.0 0.02282353869821621 4.943726793837447E-5 32-33 2.101083887380915E-4 7.580381083884085E-4 0.0 0.061425805413430276 4.943726793837447E-5 34-35 2.224677057226851E-4 8.69271961249751E-4 0.0 0.10446094715378526 5.7676812594770214E-5 36-37 2.4306656736367447E-4 0.0010175837650648746 0.0 0.151842448700389 6.591635725116596E-5 38-39 2.4718633969187233E-4 0.0010752605776596447 0.0 0.19754308313708796 7.415590190756171E-5 40-41 2.554258843482681E-4 0.0012400514707875596 0.0 0.23715057430038233 8.239544656395744E-5 42-43 2.554258843482681E-4 0.0013059678280387256 0.0 0.27239110679578693 8.651521889215532E-5 44-45 2.554258843482681E-4 0.0014748784934948383 0.0 0.2992355432863243 9.063499122035319E-5 46-47 2.554258843482681E-4 0.0015902321186843787 0.0 0.3210414982194756 9.063499122035319E-5 48-49 2.5954565667646594E-4 0.0016025914356689723 0.0 0.33584795996701877 9.063499122035319E-5 50-51 2.6366542900466383E-4 0.001837418458376251 0.0 0.3466458832392254 9.475476354855107E-5 52-53 2.6366542900466383E-4 0.0018456580030326469 0.0 0.35480715222138537 1.1123385286134255E-4 54-55 2.6366542900466383E-4 0.0018538975476890425 0.0 0.3616459742861938 1.2359316984593616E-4 56-57 2.7190497366105955E-4 0.0018621370923454382 0.0 0.36821289137734126 1.2359316984593616E-4 58-59 2.7190497366105955E-4 0.0018868557263146254 0.0 0.374495544177843 1.2359316984593616E-4 60-61 2.8014451831745533E-4 0.0019156941326120107 0.0 0.3803332615668994 1.2359316984593616E-4 62-63 3.131026969430383E-4 0.0019568918558939895 0.0 0.3851492754185627 1.2359316984593616E-4 64-65 3.2134224159943405E-4 0.0021299222936783 0.0 0.38914133480458646 1.2359316984593616E-4 66-67 3.2958178625582977E-4 0.0021793595616166747 0.0 0.3927626146810723 1.2359316984593616E-4 68-69 3.2958178625582977E-4 0.0022452759188678405 0.0 0.39638801432988646 1.2359316984593616E-4 70-71 3.3370155858402766E-4 0.0022988329591344127 0.0 0.39948196334836306 1.2359316984593616E-4 72-73 3.6253996488141277E-4 0.002319431820775402 0.0 0.4023452051164606 1.2771294217413405E-4 74-75 3.707795095378085E-4 0.0023647493163855785 0.0 0.4047429126114718 1.3595248683052978E-4 76-77 3.748992818660064E-4 0.0024512645352777343 0.0 0.40729305168262625 1.4007225915872766E-4 78-79 3.7901905419420427E-4 0.0024965820308879105 0.0 0.4092829017171459 1.4007225915872766E-4 80-81 3.7901905419420427E-4 0.0024965820308879105 0.0 0.41008625732114445 1.4007225915872766E-4 82-83 3.913783711787979E-4 0.002508941347872504 0.0 0.4106053486344974 1.4007225915872766E-4 84-85 4.078574604915894E-4 0.002546019298826285 0.0 0.41083605588487637 1.4007225915872766E-4 86-87 4.119772328197872E-4 0.0025872170221082637 0.0 0.41088549315281475 1.4007225915872766E-4 88 4.119772328197872E-4 0.0027190497366105957 0.0 0.41090609201445577 1.4007225915872766E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10135 0.0 37.26763 1 GTATCAA 17010 0.0 32.05204 1 TCAACGC 19050 0.0 27.476778 4 ATCAACG 19520 0.0 26.858099 3 CAACGCA 19855 0.0 26.341671 5 AACGCAG 20275 0.0 25.837305 6 TATCAAC 21225 0.0 25.055714 2 ACGCAGA 24020 0.0 21.756666 7 CGCAGAG 24930 0.0 20.895313 8 GTACATG 40425 0.0 20.893194 1 TACATGG 40740 0.0 20.310316 2 ACATGGG 41835 0.0 19.288244 3 CATGGGG 30310 0.0 17.352196 4 GCAGAGT 31450 0.0 16.390348 9 AGAGTAC 25975 0.0 15.605245 10-11 TATACCG 965 0.0 15.187682 5 CAGAGTA 29795 0.0 14.658573 10-11 GTGGTAT 6515 0.0 13.754612 1 ATGGGGG 17340 0.0 13.740861 5 GTATAAG 5085 0.0 13.25818 1 >>END_MODULE