Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140232_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7280222 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9180 | 0.0 | 49.97462 | 1 |
ATCTCGT | 7265 | 0.0 | 38.574707 | 94 |
GTATCAA | 16625 | 0.0 | 36.441875 | 1 |
TATCTCG | 8765 | 0.0 | 34.414524 | 94 |
TCAACGC | 19545 | 0.0 | 30.31936 | 4 |
ATCAACG | 19610 | 0.0 | 30.175255 | 3 |
CAACGCA | 20000 | 0.0 | 29.629595 | 5 |
AACGCAG | 20550 | 0.0 | 28.919811 | 6 |
TATCAAC | 20780 | 0.0 | 28.743744 | 2 |
TATGCCG | 4090 | 0.0 | 26.74208 | 86-87 |
ATGCCGT | 4330 | 0.0 | 26.668182 | 88-89 |
CCGTCTT | 4545 | 0.0 | 25.161722 | 90-91 |
GCCGTCT | 4725 | 0.0 | 25.072014 | 90-91 |
TGCCGTC | 4485 | 0.0 | 25.04552 | 88-89 |
ACGCAGA | 23785 | 0.0 | 24.932497 | 7 |
CGCAGAG | 24535 | 0.0 | 24.2052 | 8 |
TCTCGTA | 4620 | 0.0 | 24.100328 | 82-83 |
TCGTATG | 4790 | 0.0 | 23.83137 | 84-85 |
CTCGTAT | 4560 | 0.0 | 23.643229 | 82-83 |
CGCTATC | 13375 | 0.0 | 23.326893 | 94 |