##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140232_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7280222 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.187911852138576 33.0 31.0 34.0 30.0 34.0 2 32.416116981048106 34.0 31.0 34.0 31.0 34.0 3 32.4622023888832 34.0 31.0 34.0 31.0 34.0 4 36.09124927783795 37.0 35.0 37.0 35.0 37.0 5 35.9484436051538 37.0 35.0 37.0 35.0 37.0 6 35.9699242687929 37.0 35.0 37.0 35.0 37.0 7 35.92670044951926 37.0 35.0 37.0 35.0 37.0 8 35.927136150518486 37.0 35.0 37.0 35.0 37.0 9 37.701532727985494 39.0 37.0 39.0 35.0 39.0 10-11 37.594534136459025 39.0 37.0 39.0 35.0 39.0 12-13 37.561757114000095 39.0 37.0 39.0 35.0 39.0 14-15 38.84389686193636 40.0 38.0 41.0 35.0 41.0 16-17 38.83106991792283 40.0 38.0 41.0 35.0 41.0 18-19 38.816983740331 40.0 38.0 41.0 35.0 41.0 20-21 38.8131759681127 40.0 38.0 41.0 34.5 41.0 22-23 38.74082512931865 40.0 38.0 41.0 34.0 41.0 24-25 38.68185667479541 40.0 38.0 41.0 34.0 41.0 26-27 38.51992257334929 40.0 38.0 41.0 34.0 41.0 28-29 38.395651953141396 40.0 38.0 41.0 34.0 41.0 30-31 38.276273329215485 40.0 38.0 41.0 34.0 41.0 32-33 38.187530230262595 40.0 38.0 41.0 34.0 41.0 34-35 38.23693222171181 40.0 38.0 41.0 34.0 41.0 36-37 38.197599222408805 40.0 38.0 41.0 33.5 41.0 38-39 38.13618936937158 40.0 38.0 41.0 33.0 41.0 40-41 38.06978405794169 40.0 37.5 41.0 33.0 41.0 42-43 38.044534994982946 40.0 37.0 41.0 33.0 41.0 44-45 38.082013909537366 40.0 37.0 41.0 33.0 41.0 46-47 38.07223628128148 40.0 37.0 41.0 33.0 41.0 48-49 37.99454628800042 40.0 37.0 41.0 33.0 41.0 50-51 37.911415073068156 40.0 37.0 41.0 33.0 41.0 52-53 37.689587822311296 40.0 37.0 41.0 32.5 41.0 54-55 37.57559486100228 40.0 36.0 41.0 32.0 41.0 56-57 37.51555977352831 39.0 36.0 41.0 32.0 41.0 58-59 37.36200140251724 39.0 36.0 41.0 32.0 41.0 60-61 37.170130650196086 39.0 35.0 41.0 31.5 41.0 62-63 36.92992578207359 39.0 35.0 40.0 31.0 41.0 64-65 36.64522757866624 38.0 35.0 40.0 31.0 41.0 66-67 36.36405580645624 37.5 35.0 40.0 31.0 41.0 68-69 36.08133671613188 37.0 35.0 40.0 30.5 41.0 70-71 35.78332284350358 36.5 34.0 39.0 30.0 41.0 72-73 35.469021474633706 36.0 34.0 39.0 30.0 40.5 74-75 35.09177831362657 36.0 34.0 38.5 30.0 40.0 76-77 33.7143464471183 34.5 32.0 36.5 28.0 39.0 78-79 34.39635595114579 35.0 33.5 37.0 29.0 39.0 80-81 34.31698107043073 35.0 34.0 37.0 29.5 39.0 82-83 34.029973491712965 35.0 34.0 36.0 29.0 38.0 84-85 33.86148311784055 35.0 33.5 36.0 29.0 37.0 86-87 33.63243699213497 35.0 33.0 35.5 29.0 37.0 88-89 33.527378760520975 35.0 33.0 35.0 29.0 36.5 90-91 33.36418722051717 35.0 33.0 35.0 29.0 36.0 92-93 33.26493387739914 35.0 33.0 35.0 29.0 36.0 94-95 33.24194945592629 35.0 33.0 35.0 29.0 36.0 96-97 33.26070519749018 35.0 33.0 35.0 29.0 35.0 98-99 33.34751692717174 35.0 33.0 35.0 29.5 35.0 100 32.10053040248606 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 37.0 21 197.0 22 928.0 23 3476.0 24 9110.0 25 20401.0 26 37371.0 27 60038.0 28 85440.0 29 115118.0 30 146455.0 31 182526.0 32 226628.0 33 286740.0 34 384976.0 35 536131.0 36 835687.0 37 1484628.0 38 1938125.0 39 891578.0 40 34625.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.42567657964277 20.99043133574773 15.251526670477904 23.332365414131605 2 14.574844008877752 21.556183314190143 40.828040683374766 23.04093199355734 3 17.73079172585671 26.531553570756493 31.110218891676656 24.62743581171014 4 12.660465573714646 18.878215526944096 39.31623238961669 29.145086509724567 5 13.252123355578993 37.97848472203183 35.60694989795641 13.162442024432771 6 29.038839749666973 38.3315096709963 19.214208028271663 13.415442551065063 7 26.126552184809746 33.023498459250284 23.338148204821227 17.511801151118746 8 24.744108078022894 36.08639956309025 21.294721507118876 17.87477085176798 9 25.278583537699813 17.246589458398383 21.659394452531807 35.815432551369994 10-11 23.99494136305184 27.023104515219455 28.957626566882166 20.02432755484654 12-13 24.951237750716942 24.44485209379604 29.02204767931527 21.581862476171743 14-15 22.16874018402186 25.935362960085556 26.705071631057404 25.19082522483518 16-17 21.65491506761405 29.10438996811052 27.296211448564755 21.94448351571068 18-19 21.67508582847382 28.23936041475681 28.955465344581715 21.130088412187657 20-21 22.61317601072969 27.250450138104625 28.83524670645061 21.301127144715075 22-23 22.332391507867996 27.18228090468274 28.64896919534886 21.8363583921004 24-25 22.077421056099446 27.412017763919227 28.710693632305397 21.799867547675934 26-27 22.013593528823662 27.540822931343012 28.597870547876653 21.847712991956676 28-29 21.970025925375246 27.557027504224962 28.634218661951344 21.838727908448448 30-31 22.25714865557747 27.303724168544207 28.585129045067053 21.85399813081127 32-33 22.052374133281543 27.48500459340516 28.470114923098844 21.99250635021446 34-35 22.156336911150078 27.512650951149816 28.51023875085862 21.820773386841488 36-37 22.148023847084858 27.48898631262734 28.456778513992838 21.906211326294972 38-39 21.954008613216068 27.59896598950697 28.48088037953288 21.96614501774408 40-41 22.305728232053998 27.38178304561042 28.439071544730744 21.873417177604836 42-43 22.060222751100007 27.46306578983106 28.255477110380795 22.22123434868814 44-45 22.131232819665016 27.556597255770406 28.13738017026309 22.174789754301496 46-47 22.17660482392279 27.50380400492786 28.034912908298747 22.284678262850598 48-49 22.147424049496486 27.76054018749537 27.866491673510595 22.225544089497554 50-51 22.10221677632025 27.82420119877489 27.69905710996447 22.374524914940384 52-53 22.128100275743577 27.658570952924922 27.603164704821925 22.610164066509572 54-55 22.273249917199117 27.384785194796677 27.958596242258256 22.38336864574595 56-57 22.131150383233845 27.190933446222836 28.010889862867437 22.667026307675883 58-59 21.902254771425074 27.052632216647897 28.17271859116275 22.872394420764284 60-61 22.099281568916492 27.274482914851962 28.394396539695 22.23183897653655 62-63 21.633109073600128 27.509079608762843 28.386783259195557 22.471028058441473 64-65 21.463568563564493 27.830370750191424 28.043306137095815 22.66275454914827 66-67 21.569022808102822 28.352710676658898 27.550617747381445 22.527648767856835 68-69 21.61448622756865 28.379655239468406 27.41374462170798 22.59211391125496 70-71 21.61126403920192 27.853214502713524 27.385494890846505 23.15002656723805 72-73 21.821749655572916 27.351320692220305 27.411838258258868 23.41509139394791 74-75 21.918934202506865 27.39051445285437 27.56927126289943 23.121280081739336 76-77 22.25926013675044 27.291278247665325 26.977505369774352 23.471956245809885 78-79 22.428791146923018 27.316108439593823 26.562273305187666 23.692827108295493 80-81 22.277204734404307 27.712080104540902 26.716733108390827 23.29398205266396 82-83 22.265381529712077 27.495025376320875 26.81763355563626 23.42195953833079 84-85 22.38089280829833 27.874481831501676 26.757752648887966 22.986872711312028 86-87 22.80230217132709 27.744039112719694 26.829211925915526 22.624446790037695 88-89 22.53517065164872 27.843652537885365 27.177100755886517 22.444076054579394 90-91 22.500681432814265 27.4615388699897 27.08122856141568 22.956551135780355 92-93 22.492104424393702 26.99136961627147 27.336401342142093 23.18012461719274 94-95 21.671241535452726 27.491535452724808 27.998463093692923 22.838759918129547 96-97 21.74197535968288 27.37054585456956 28.25656962583337 22.630909159914193 98-99 22.953982153416618 29.270656648806387 28.611425245759133 19.163935952017866 100 22.068897788785154 30.50330819873755 22.058788972700434 25.36900503977686 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 709.0 1 706.5 2 1171.0 3 1751.0 4 2220.5 5 3480.5 6 4757.0 7 5851.0 8 6893.5 9 7264.0 10 6830.5 11 6107.5 12 6472.5 13 8617.0 14 13787.0 15 21526.5 16 28419.0 17 32977.5 18 34881.0 19 33909.5 20 31108.5 21 28071.0 22 25919.5 23 25872.0 24 28969.0 25 35343.0 26 44923.5 27 56779.5 28 71298.0 29 89342.5 30 108701.5 31 128889.0 32 149888.0 33 170112.5 34 189800.5 35 207974.5 36 228205.0 37 247355.0 38 259874.5 39 269412.0 40 280087.0 41 289572.5 42 295205.0 43 300862.5 44 305732.0 45 311180.5 46 314623.0 47 315160.5 48 315538.5 49 311720.0 50 303778.0 51 294209.0 52 279512.5 53 260687.0 54 243135.5 55 223762.5 56 202672.5 57 180232.5 58 157059.5 59 135065.0 60 112878.5 61 91964.5 62 72495.0 63 55212.0 64 41691.5 65 31907.0 66 24885.5 67 19192.5 68 14441.0 69 10457.5 70 7337.5 71 5121.0 72 3498.5 73 2328.0 74 1529.5 75 1019.5 76 677.0 77 419.0 78 289.0 79 217.0 80 145.0 81 93.0 82 67.0 83 48.0 84 33.0 85 22.0 86 13.0 87 7.5 88 7.5 89 6.5 90 5.0 91 4.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0010713958997404201 18-19 5.49433794738677E-5 20-21 0.0 22-23 0.006841178537244757 24-25 0.008120444744804719 26-27 0.021339735391404765 28-29 0.016715489510463064 30-31 0.0021478136358629805 32-33 0.006471400995533284 34-35 0.033139721883758945 36-37 0.005580725965575052 38-39 0.0027442325031087336 40-41 0.007575208162016502 42-43 0.0074049665895970194 44-45 0.00812701779617111 46-47 0.005043172801218084 48-49 0.001112663668825913 50-51 0.0023471759256033253 52-53 9.197499751667507E-4 54-55 0.0052459298546973215 56-57 8.558123640245108E-4 58-59 0.0012707188116474087 60-61 7.665230366219404E-4 62-63 0.0012617971461303047 64-65 4.3216181594091783E-4 66-67 0.005331629254741645 68-69 0.004305623368693394 70-71 0.0016596908763113025 72-73 0.0015825472886889886 74-75 7.11759254549741E-4 76-77 8.086030839959903E-4 78-79 6.624453901692941E-4 80-81 9.270659810241182E-4 82-83 0.007323343198340266 84-85 7.802947088300609E-4 86-87 6.872969145007794E-5 88-89 4.530315214105311E-4 90-91 3.2744066974183607E-4 92-93 0.0023582432527915254 94-95 0.003266782729217114 96-97 6.59229428604417E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 138.0 20-21 450.0 22-23 947.0 24-25 2799.0 26-27 2870.0 28-29 6409.0 30-31 14731.0 32-33 20257.0 34-35 27993.0 36-37 40518.0 38-39 28757.0 40-41 50209.0 42-43 60296.0 44-45 66831.0 46-47 66335.0 48-49 60112.0 50-51 32869.0 52-53 9273.0 54-55 8857.0 56-57 9303.0 58-59 35698.0 60-61 62195.0 62-63 61513.0 64-65 66034.0 66-67 70675.0 68-69 70052.0 70-71 68684.0 72-73 66491.0 74-75 68707.0 76-77 68325.0 78-79 72751.0 80-81 74037.0 82-83 71699.0 84-85 74012.0 86-87 79320.0 88-89 86768.0 90-91 93476.0 92-93 103005.0 94-95 120989.0 96-97 295582.0 98-99 549341.0 100-101 4510914.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.89965085034021 #Duplication Level Percentage of deduplicated Percentage of total 1 89.25829903152973 74.88740124240604 2 7.45224603397676 12.504816806029655 3 1.785782505512893 4.494795861215324 4 0.6664574642844522 2.2366219424027447 5 0.3057880956989758 1.2827757231667247 6 0.15847942187235087 0.7977820897232405 7 0.09842079662332032 0.5780229331176243 8 0.06873773787349112 0.46136577662624884 9 0.038522709468198635 0.2908837686771864 >10 0.16354076549569918 2.109565509544471 >50 0.0028710579016358044 0.1534092246487117 >100 7.43233586996386E-4 0.1328305137841439 >500 8.335965623633006E-5 0.04357165531805229 >1k 2.7786519254465415E-5 0.026156953339790047 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.494337947386769E-5 0.0 0.0 0.0 3 0.0 5.494337947386769E-5 0.0 1.3735844868466923E-5 0.0 4 0.0 1.236226038162023E-4 0.0 1.3735844868466923E-5 1.3735844868466923E-5 5 0.0 1.236226038162023E-4 0.0 2.7471689736933846E-5 1.3735844868466923E-5 6 1.3735844868466923E-5 1.236226038162023E-4 0.0 2.7471689736933846E-5 1.3735844868466923E-5 7 1.3735844868466923E-5 1.236226038162023E-4 0.0 4.120753460540077E-5 1.3735844868466923E-5 8 1.3735844868466923E-5 1.236226038162023E-4 0.0 4.120753460540077E-5 1.3735844868466923E-5 9 1.3735844868466923E-5 1.3735844868466922E-4 0.0 9.615091407926846E-5 1.3735844868466923E-5 10-11 3.4339612171167305E-5 1.3735844868466922E-4 0.0 1.7169806085583653E-4 1.3735844868466923E-5 12-13 5.494337947386769E-5 1.4422637111890268E-4 0.0 2.1977351789547074E-4 2.0603767302700384E-5 14-15 6.181130190810115E-5 2.0603767302700384E-4 0.0 2.609810525008715E-4 2.7471689736933846E-5 16-17 6.867922434233461E-5 2.2664144032970423E-4 0.0 3.227923544089727E-4 2.7471689736933846E-5 18-19 7.554714677656807E-5 2.609810525008715E-4 0.0 4.8075457039634226E-4 2.7471689736933846E-5 20-21 8.241506921080154E-5 2.8845274223780537E-4 0.0 8.03546924805315E-4 2.7471689736933846E-5 22-23 8.241506921080154E-5 3.2966027684320614E-4 0.0 0.0017169806085583655 4.120753460540077E-5 24-25 1.3049052625043576E-4 3.2966027684320614E-4 0.0 0.0038048290285653376 4.120753460540077E-5 26-27 1.5109429355313615E-4 3.2966027684320614E-4 0.0 0.008241506921080154 5.494337947386769E-5 28-29 1.5109429355313615E-4 3.2966027684320614E-4 0.0 0.019566711015131133 6.867922434233461E-5 30-31 1.7169806085583653E-4 3.9833950118554076E-4 0.0 0.02176444619408584 6.867922434233461E-5 32-33 1.7856598329007E-4 3.9833950118554076E-4 0.0 0.026104973172521386 6.867922434233461E-5 34-35 1.7856598329007E-4 4.876224928305758E-4 0.0 0.03175040541346129 6.867922434233461E-5 36-37 1.7856598329007E-4 5.906413293440777E-4 0.0 0.04378987344067255 6.867922434233461E-5 38-39 1.7856598329007E-4 6.181130190810115E-4 0.0 0.19020024389366147 8.241506921080154E-5 40-41 1.7856598329007E-4 7.073960107260465E-4 0.0 0.343217555728383 8.241506921080154E-5 42-43 1.7856598329007E-4 7.486035453314473E-4 0.0 0.3713004905619636 8.241506921080154E-5 44-45 1.7856598329007E-4 8.172827696737819E-4 0.0 0.4085452339228117 8.241506921080154E-5 46-47 1.7856598329007E-4 8.653582267134162E-4 0.0 0.448592089636827 8.241506921080154E-5 48-49 1.7856598329007E-4 8.653582267134162E-4 0.0 0.4867708704487308 8.241506921080154E-5 50-51 1.9230182815853692E-4 9.271695286215173E-4 0.0 0.5220857276055593 8.241506921080154E-5 52-53 2.129055954612373E-4 9.340374510557508E-4 0.0 1.0164937278011577 8.241506921080154E-5 54-55 2.1977351789547077E-4 9.409053734899843E-4 0.0 1.688643560594718 8.241506921080154E-5 56-57 2.1977351789547077E-4 9.615091407926846E-4 0.0 2.42443843058632 8.241506921080154E-5 58-59 2.1977351789547077E-4 9.615091407926846E-4 0.0 3.1747383527590234 8.241506921080154E-5 60-61 2.2664144032970423E-4 9.615091407926846E-4 0.0 3.373393009169226 8.241506921080154E-5 62-63 2.335093627639377E-4 9.615091407926846E-4 0.0 3.381538365176227 9.615091407926846E-5 64-65 2.335093627639377E-4 0.0010988675894773538 0.0 3.3884818347572367 9.615091407926846E-5 66-67 2.609810525008715E-4 0.001146943046516988 0.0 3.3941890783000845 9.615091407926846E-5 68-69 2.609810525008715E-4 0.0011812826586881553 0.0 3.3999512652224064 9.615091407926846E-5 70-71 2.609810525008715E-4 0.0011950185035566223 0.0 3.404573377020646 9.615091407926846E-5 72-73 2.609810525008715E-4 0.0012018864259908558 0.0 3.4085293003427646 1.236226038162023E-4 74-75 2.609810525008715E-4 0.001236226038162023 0.0 3.4117572238868537 1.236226038162023E-4 76-77 2.609810525008715E-4 0.0012980373400701241 0.0 3.41506069457772 1.236226038162023E-4 78-79 2.609810525008715E-4 0.0013461127971097584 0.0 3.4172446939118064 1.236226038162023E-4 80-81 2.609810525008715E-4 0.0013461127971097584 0.0 3.4179177503103615 1.3049052625043576E-4 82-83 2.609810525008715E-4 0.0013529807195439918 0.0 3.4182680143545072 1.3735844868466922E-4 84-85 2.609810525008715E-4 0.0013941882541493927 0.0 3.418460316182666 1.3735844868466922E-4 86-87 2.609810525008715E-4 0.0014697354009259608 0.0 3.418556467096745 1.3735844868466922E-4 88 2.609810525008715E-4 0.0015521504701367624 0.0 3.418577070864048 1.3735844868466922E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9180 0.0 49.97462 1 ATCTCGT 7265 0.0 38.574707 94 GTATCAA 16625 0.0 36.441875 1 TATCTCG 8765 0.0 34.414524 94 TCAACGC 19545 0.0 30.31936 4 ATCAACG 19610 0.0 30.175255 3 CAACGCA 20000 0.0 29.629595 5 AACGCAG 20550 0.0 28.919811 6 TATCAAC 20780 0.0 28.743744 2 TATGCCG 4090 0.0 26.74208 86-87 ATGCCGT 4330 0.0 26.668182 88-89 CCGTCTT 4545 0.0 25.161722 90-91 GCCGTCT 4725 0.0 25.072014 90-91 TGCCGTC 4485 0.0 25.04552 88-89 ACGCAGA 23785 0.0 24.932497 7 CGCAGAG 24535 0.0 24.2052 8 TCTCGTA 4620 0.0 24.100328 82-83 TCGTATG 4790 0.0 23.83137 84-85 CTCGTAT 4560 0.0 23.643229 82-83 CGCTATC 13375 0.0 23.326893 94 >>END_MODULE