##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140230_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5694393 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15925332164464 33.0 31.0 34.0 30.0 34.0 2 32.37747166379279 34.0 31.0 34.0 31.0 34.0 3 32.42789933887598 34.0 31.0 34.0 30.0 34.0 4 36.06353618375128 37.0 35.0 37.0 35.0 37.0 5 35.91840078477197 37.0 35.0 37.0 35.0 37.0 6 35.94394029354841 37.0 35.0 37.0 35.0 37.0 7 35.8944273779488 37.0 35.0 37.0 35.0 37.0 8 35.896206847683324 37.0 35.0 37.0 35.0 37.0 9 37.676549370582606 39.0 37.0 39.0 35.0 39.0 10-11 37.563479724704635 39.0 37.0 39.0 35.0 39.0 12-13 37.525706076134895 39.0 37.0 39.0 35.0 39.0 14-15 38.80695765114912 40.0 38.0 41.0 35.0 41.0 16-17 38.793164258244914 40.0 38.0 41.0 35.0 41.0 18-19 38.766386689503165 40.0 38.0 41.0 34.0 41.0 20-21 38.751983195307275 40.0 38.0 41.0 34.0 41.0 22-23 38.67557082781725 40.0 38.0 41.0 34.0 41.0 24-25 38.61398027331167 40.0 38.0 41.0 34.0 41.0 26-27 38.445209282549406 40.0 38.0 41.0 34.0 41.0 28-29 38.31486049355229 40.0 38.0 41.0 34.0 41.0 30-31 38.19302928908044 40.0 38.0 41.0 34.0 41.0 32-33 38.11434266353051 40.0 37.5 41.0 33.0 41.0 34-35 38.16906322776141 40.0 38.0 41.0 33.0 41.0 36-37 38.129542959671895 40.0 38.0 41.0 33.0 41.0 38-39 38.068752809891976 40.0 37.5 41.0 33.0 41.0 40-41 38.00093095730961 40.0 37.0 41.0 33.0 41.0 42-43 37.9695282094122 40.0 37.0 41.0 33.0 41.0 44-45 38.006873155089245 40.0 37.0 41.0 33.0 41.0 46-47 37.989970220269555 40.0 37.0 41.0 33.0 41.0 48-49 37.907157562513405 40.0 37.0 41.0 33.0 41.0 50-51 37.81939142605867 40.0 37.0 41.0 33.0 41.0 52-53 37.583861274911 40.0 36.5 41.0 32.0 41.0 54-55 37.45311798820153 39.0 36.0 41.0 32.0 41.0 56-57 37.37878200083978 39.0 36.0 41.0 32.0 41.0 58-59 37.20663500141912 39.0 35.5 41.0 31.5 41.0 60-61 37.00021359722465 39.0 35.0 40.5 31.0 41.0 62-63 36.740140348842324 38.0 35.0 40.0 31.0 41.0 64-65 36.438002867034186 38.0 35.0 40.0 31.0 41.0 66-67 36.145998287143016 37.0 35.0 40.0 30.0 41.0 68-69 35.85483441412184 37.0 34.0 39.5 30.0 41.0 70-71 35.547879807021545 36.0 34.0 39.0 30.0 41.0 72-73 35.236692704503184 36.0 34.0 39.0 30.0 40.0 74-75 34.88498127408421 35.5 34.0 38.5 29.0 40.0 76-77 33.548469243706826 34.5 32.0 36.5 28.0 39.0 78-79 34.27400576894929 35.0 33.5 37.0 29.0 39.0 80-81 34.22354245576511 35.0 34.0 36.5 29.0 39.0 82-83 33.955095506664065 35.0 33.5 36.0 29.0 38.0 84-85 33.78388428567121 35.0 33.0 36.0 29.0 37.0 86-87 33.562098691996226 35.0 33.0 35.0 29.0 37.0 88-89 33.456581260506574 35.0 33.0 35.0 29.0 36.5 90-91 33.284068358207094 35.0 33.0 35.0 29.0 36.0 92-93 33.18259565666017 35.0 33.0 35.0 29.0 36.0 94-95 33.179155081234654 35.0 33.0 35.0 29.0 36.0 96-97 33.21456245268896 35.0 33.0 35.0 29.0 35.0 98-99 33.31198594731309 35.0 33.0 35.0 29.5 35.0 100 31.995502952816036 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 0.0 18 0.0 19 3.0 20 30.0 21 171.0 22 774.0 23 2801.0 24 7280.0 25 15971.0 26 29048.0 27 46832.0 28 66598.0 29 90779.0 30 115838.0 31 144738.0 32 179757.0 33 229004.0 34 305460.0 35 422820.0 36 651374.0 37 1120428.0 38 1416779.0 39 814740.0 40 33167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.4955390328697 19.89817000688221 13.02619963181326 24.58009132843483 2 15.638067130245489 21.260843780891133 39.562829611514346 23.538259477349037 3 18.708771944612884 25.352008545950376 30.230948232761595 25.70827127667514 4 12.831077869054699 17.313364216344045 38.21469645667238 31.640861457928875 5 13.2901610408695 37.70092791277314 35.69692151560316 13.3119895307542 6 31.030682286944366 37.332881660960176 18.26610843333082 13.370327618764636 7 27.204076009506196 32.113853048077296 22.920792435646785 17.761278506769727 8 25.052204861870266 36.209636391446814 21.013653255052823 17.7245054916301 9 25.68874329537845 16.040603449744335 21.097033520517464 37.17361973435975 10-11 24.651714414512664 26.343738480993494 28.81701350784886 20.18753359664498 12-13 25.087177860748284 23.90368033959019 29.015524569519524 21.993617230142 14-15 22.115096376382873 25.440455198648916 26.4360924860648 26.00835593890341 16-17 22.018411699811427 28.43683189932975 27.21502537443492 22.3297310264239 18-19 22.02353528752137 27.86742309596005 28.595262825110808 21.51377879140778 20-21 22.710911933203416 27.050506890057196 28.55506851860324 21.68351265813615 22-23 22.436723359779855 27.03375635295685 28.32991719145626 22.19960309580704 24-25 22.25571708496546 27.081392955672555 28.470603075306254 22.192286884055722 26-27 22.213828361743317 27.245111848142056 28.345511217594787 22.195548572519836 28-29 22.17192461297128 27.377599665285775 28.3342400855287 22.116235636214242 30-31 22.393314794642073 27.246801723367074 28.23722242068675 22.122661061304104 32-33 22.154048031550918 27.380712406588714 28.23301798681111 22.232221575049255 34-35 22.29629939604877 27.358918788963038 28.26573854154534 22.07904327344286 36-37 22.30716621244634 27.33834340916708 28.184761733746882 22.169728644639694 38-39 22.16605981962411 27.468798300220428 28.26162493575769 22.10351694439778 40-41 22.400661150813583 27.306108685831422 28.09238818294162 22.20084198041338 42-43 22.244431337492742 27.42744841441724 27.978075551336758 22.350044696753265 44-45 22.308050616102165 27.526578396068807 27.854140429422763 22.311230558406262 46-47 22.36053706468209 27.48884295572805 27.701748540725774 22.44887143886408 48-49 22.313154045869783 27.614128878519097 27.6580050062413 22.41471206936982 50-51 22.304170836444527 27.67870144597052 27.583603400679763 22.43352431690518 52-53 22.429486801184257 27.587762682725863 27.474547346628107 22.50820316946177 54-55 22.367197796006323 27.538870102028795 27.570687010756906 22.523245091207976 56-57 22.36526819351421 27.61366858469262 27.565136599672375 22.4559266221208 58-59 22.336407893727728 27.66865260378554 27.525499791248148 22.46943971123859 60-61 22.39689026708193 27.62485493371995 27.579036703499344 22.399218095698778 62-63 22.3531190444517 27.697103939370482 27.555753219199875 22.394023796977947 64-65 22.28848099451511 27.676137864121507 27.51140738609546 22.523973755267924 66-67 22.38531891514511 27.736491297895398 27.336743203862273 22.541446583097223 68-69 22.328654314741772 27.72069222495813 27.43380852982024 22.516844930479863 70-71 22.292584959216363 27.517023645296618 27.51637886199244 22.67401253349458 72-73 22.39372065487194 27.514656641926027 27.441730641214928 22.6498920619871 74-75 22.23973280182166 27.64632374707651 27.425102435768505 22.688841015333328 76-77 22.449213112192094 27.599212765277414 27.310375012497463 22.641199110033032 78-79 22.42809211102234 27.53325322134725 27.318844666595847 22.71981000103456 80-81 22.3778920699633 27.599307754845213 27.339072079687316 22.683728095504176 82-83 22.446927812321064 27.576154282958214 27.4778266953995 22.49909120932122 84-85 22.549233233752467 27.561403246590153 27.37241733719444 22.516946182462938 86-87 22.381554168299846 27.572035597536814 27.486851249478534 22.559558984684806 88-89 22.45372593611828 27.527301635485536 27.487565283815087 22.5314071445811 90-91 22.46736713944947 27.519720121772572 27.517920701844734 22.49499203693322 92-93 22.556751950747344 27.45051085155711 27.579948979459967 22.41278821823558 94-95 22.325114338396208 27.508868912889856 27.679384026537313 22.486632722176623 96-97 22.364686371026473 27.647124821251168 27.745585422391216 22.24260338533114 98-99 23.45735857035977 29.61279056708538 27.91909978880084 19.010751073754015 100 30.13636827765998 40.97490992875047 28.88872179358955 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 914.0 1 859.0 2 1321.0 3 2001.0 4 2640.0 5 4145.5 6 5622.0 7 6771.5 8 7624.0 9 7692.0 10 7070.5 11 6202.0 12 6259.0 13 7883.5 14 11784.0 15 17235.5 16 21676.0 17 24070.5 18 25069.5 19 25155.0 20 24690.0 21 24502.5 22 25511.5 23 28534.5 24 34250.0 25 42279.5 26 52590.5 27 64161.5 28 75623.5 29 88393.5 30 100782.0 31 111622.5 32 123142.5 33 134873.0 34 145715.0 35 156665.0 36 169216.0 37 180402.5 38 189001.5 39 197765.5 40 207430.5 41 216891.5 42 223232.5 43 228317.0 44 234898.0 45 241197.5 46 245678.0 47 249431.5 48 252344.5 49 252042.5 50 250030.5 51 246019.0 52 238170.5 53 228267.0 54 216427.5 55 202724.0 56 187814.0 57 171259.0 58 153427.0 59 133431.0 60 113079.0 61 93715.0 62 75560.0 63 60013.0 64 46672.5 65 35912.0 66 27393.5 67 20960.0 68 16125.0 69 12135.0 70 8962.5 71 6441.0 72 4540.5 73 3159.5 74 2189.0 75 1523.0 76 1062.0 77 689.5 78 438.5 79 293.5 80 190.5 81 120.5 82 75.0 83 50.0 84 36.5 85 26.0 86 20.0 87 17.0 88 13.0 89 10.5 90 8.5 91 6.5 92 6.0 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0013873296065094209 18-19 1.3170850694709692E-4 20-21 0.0 22-23 0.0067794234662366705 24-25 0.008142225264016265 26-27 0.01984018023107923 28-29 0.01569386121210768 30-31 0.0017707322797270713 32-33 0.005834825634192502 34-35 0.03200999592947249 36-37 0.005803357738732834 38-39 0.0029790031731800164 40-41 0.007104622729028777 42-43 0.007519548060417357 44-45 0.008783702446205185 46-47 0.00545978832835167 48-49 0.001205478728610287 50-51 0.002817425320559585 52-53 0.0011059121279413102 54-55 0.005856500889109826 56-57 0.0012510666594338332 58-59 0.001357552474721917 60-61 8.511371397280054E-4 62-63 0.0017639993060219203 64-65 4.725163490656777E-4 66-67 0.005764447039036474 68-69 0.004117881360819652 70-71 0.001792246892937837 72-73 0.001594953920230595 74-75 8.528292723324005E-4 76-77 9.21305915875898E-4 78-79 8.534748594563341E-4 80-81 0.001065089242189004 82-83 0.007673643505329857 84-85 8.195227677887059E-4 86-87 7.342417943890466E-5 88-89 4.727533578551329E-4 90-91 3.9282956785072676E-4 92-93 0.0024811805043309524 94-95 0.003765009507639799 96-97 4.0798574987372844E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 137.0 20-21 403.0 22-23 777.0 24-25 2034.0 26-27 2338.0 28-29 8751.0 30-31 18722.0 32-33 24396.0 34-35 33398.0 36-37 50623.0 38-39 56611.0 40-41 55382.0 42-43 61857.0 44-45 68331.0 46-47 68317.0 48-49 63155.0 50-51 56948.0 52-53 53890.0 54-55 57411.0 56-57 60490.0 58-59 59837.0 60-61 57844.0 62-63 56560.0 64-65 59324.0 66-67 62801.0 68-69 63042.0 70-71 62028.0 72-73 58447.0 74-75 60036.0 76-77 59450.0 78-79 63290.0 80-81 63183.0 82-83 60788.0 84-85 61746.0 86-87 65599.0 88-89 71628.0 90-91 75817.0 92-93 81931.0 94-95 95226.0 96-97 209839.0 98-99 1161359.0 100-101 2340647.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.43890414650495 #Duplication Level Percentage of deduplicated Percentage of total 1 91.76343454514868 81.15457591892485 2 6.070907878944138 10.738088799764046 3 1.2857088978947857 3.4112005794367644 4 0.419471867267071 1.4839052904555177 5 0.19388060336438614 0.8573294048404747 6 0.0882773117464785 0.4684289227114769 7 0.05188376710269346 0.3211980453888285 8 0.029264397618997226 0.20704890047453625 9 0.02082067666399369 0.16572220449770791 >10 0.07462430030614445 1.000258041148554 >50 0.0010889015420370773 0.06413368197000678 >100 6.084449507794603E-4 0.11497075729762557 >500 2.8407449761488677E-5 0.013139453089610441 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.756113425961292E-5 0.0 0.0 0.0 2 0.0 5.268340277883876E-5 0.0 0.0 0.0 3 0.0 5.268340277883876E-5 0.0 0.0 0.0 4 0.0 7.024453703845169E-5 0.0 0.0 0.0 5 0.0 7.024453703845169E-5 0.0 0.0 1.756113425961292E-5 6 1.2292793981729045E-4 7.024453703845169E-5 0.0 0.0 1.756113425961292E-5 7 1.2292793981729045E-4 7.024453703845169E-5 0.0 1.756113425961292E-5 1.756113425961292E-5 8 1.2292793981729045E-4 7.024453703845169E-5 0.0 1.756113425961292E-5 1.756113425961292E-5 9 1.2292793981729045E-4 2.1073361111535505E-4 0.0 1.756113425961292E-5 1.756113425961292E-5 10-11 1.2292793981729045E-4 2.1073361111535505E-4 0.0 1.756113425961292E-5 1.756113425961292E-5 12-13 1.2292793981729045E-4 2.1073361111535505E-4 0.0 1.756113425961292E-5 1.756113425961292E-5 14-15 1.2292793981729045E-4 2.634170138941938E-4 0.0 5.268340277883876E-5 7.902510416825815E-5 16-17 1.580502083365163E-4 2.634170138941938E-4 0.0 8.78056712980646E-5 9.658623842787106E-5 18-19 1.580502083365163E-4 2.809781481538067E-4 0.0 2.019530439855486E-4 1.4048907407690337E-4 20-21 1.580502083365163E-4 3.161004166730326E-4 0.0 9.834235185383236E-4 1.4048907407690337E-4 22-23 1.6683077546632275E-4 3.2488098380283905E-4 0.0 0.0031961264352495513 1.580502083365163E-4 24-25 1.756113425961292E-4 3.775643865816778E-4 0.0 0.006313227766330845 1.756113425961292E-4 26-27 1.756113425961292E-4 4.039060879710972E-4 0.0 0.011704495984032013 1.756113425961292E-4 28-29 1.756113425961292E-4 4.039060879710972E-4 0.0 0.03377006118123565 1.756113425961292E-4 30-31 1.756113425961292E-4 4.5658949074993594E-4 0.0 0.036931065347965975 1.756113425961292E-4 32-33 1.8439190972593565E-4 4.5658949074993594E-4 0.0 0.04285794816058534 1.756113425961292E-4 34-35 1.9317247685574212E-4 5.619562963076135E-4 0.0 0.05084826424870921 1.756113425961292E-4 36-37 1.9317247685574212E-4 6.497619676056781E-4 0.0 0.06430009309157271 1.756113425961292E-4 38-39 1.9317247685574212E-4 6.936648032547103E-4 0.0 0.09680575260611624 1.756113425961292E-4 40-41 1.9317247685574212E-4 7.902510416825815E-4 0.0 0.13083923080124607 1.756113425961292E-4 42-43 1.9317247685574212E-4 8.341538773316138E-4 0.0 0.15340528832484868 1.756113425961292E-4 44-45 1.9317247685574212E-4 9.395206828892912E-4 0.0 0.17906210547814316 1.756113425961292E-4 46-47 1.9317247685574212E-4 0.0010009846527979365 0.0 0.20681747817546137 1.756113425961292E-4 48-49 1.9317247685574212E-4 0.001027326354187356 0.0 0.23248307589588565 1.756113425961292E-4 50-51 2.195141782451615E-4 0.0011414737268748399 0.0 0.25790281773667534 1.756113425961292E-4 52-53 2.2829474537496797E-4 0.0011414737268748399 0.0 0.3153628490341288 1.9317247685574212E-4 54-55 2.2829474537496797E-4 0.0011678154282642591 0.0 0.3828941908294703 2.1073361111535505E-4 56-57 2.2829474537496797E-4 0.0011765959953940657 0.0 0.44962650101599944 2.1073361111535505E-4 58-59 2.2829474537496797E-4 0.0011765959953940657 0.0 0.4929849415029838 2.1073361111535505E-4 60-61 2.634170138941938E-4 0.001202937696783485 0.0 0.5243579078577822 2.1073361111535505E-4 62-63 3.161004166730326E-4 0.0012292793981729044 0.0 0.5480390974068703 2.2829474537496797E-4 64-65 3.161004166730326E-4 0.0014400130092882596 0.0 0.5566177114926911 2.2829474537496797E-4 66-67 3.4244211806245194E-4 0.0014751352778074854 0.0 0.5649943725345266 2.2829474537496797E-4 68-69 3.512226851922584E-4 0.0015014769791969048 0.0 0.5729671274883907 2.2829474537496797E-4 70-71 3.6000325232206484E-4 0.0015190381134565175 0.0 0.5798598726852888 2.634170138941938E-4 72-73 3.8634495371148424E-4 0.001527818680586324 0.0 0.5849174793520573 3.161004166730326E-4 74-75 3.8634495371148424E-4 0.0015541603819757433 0.0 0.5888862956947298 3.161004166730326E-4 76-77 3.8634495371148424E-4 0.001580502083365163 0.0 0.5933995071994504 3.161004166730326E-4 78-79 3.8634495371148424E-4 0.001580502083365163 0.0 0.5962005081138586 3.161004166730326E-4 80-81 3.9512552084129075E-4 0.001580502083365163 0.0 0.5969907591555412 3.161004166730326E-4 82-83 4.039060879710972E-4 0.001580502083365163 0.0 0.5973858846763825 3.336615509326455E-4 84-85 4.039060879710972E-4 0.001580502083365163 0.0 0.5977195462273153 3.336615509326455E-4 86-87 4.039060879710972E-4 0.0015980632176247759 0.0 0.5978073518986133 3.336615509326455E-4 88 4.039060879710972E-4 0.0016858688889228404 0.0 0.5978336936000027 3.336615509326455E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5400 0.0 42.357853 1 GTATCAA 9435 0.0 33.750015 1 TCAACGC 11265 0.0 27.362478 4 ATCAACG 11340 0.0 27.253418 3 CAACGCA 11595 0.0 26.583727 5 TATCAAC 12095 0.0 25.788162 2 AACGCAG 12075 0.0 25.62828 6 GTACATG 14795 0.0 22.404766 1 TACATGG 14785 0.0 22.17173 2 ACGCAGA 14255 0.0 21.680378 7 ACATGGG 14900 0.0 21.48069 3 CGCAGAG 14635 0.0 21.061722 8 CATGGGG 11820 0.0 19.523775 4 GCAGAGT 17680 0.0 17.388172 9 ACCGAAC 740 0.0 17.080273 8 AGAGTAC 15570 0.0 16.9694 10-11 GGACCGA 975 0.0 16.308907 6 GTGGTAT 3180 0.0 16.283262 1 GAGTACA 10470 0.0 16.277752 1 GAGTACT 10400 0.0 16.270273 12-13 >>END_MODULE