##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140226_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7723746 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.219338906276825 33.0 31.0 34.0 31.0 34.0 2 32.49999637481606 34.0 31.0 34.0 31.0 34.0 3 32.301523250505646 34.0 31.0 34.0 30.0 34.0 4 36.09971638114459 37.0 35.0 37.0 35.0 37.0 5 35.94562457128963 37.0 35.0 37.0 35.0 37.0 6 36.0435765236195 37.0 35.0 37.0 35.0 37.0 7 36.009049106482784 37.0 35.0 37.0 35.0 37.0 8 35.988399152431995 37.0 35.0 37.0 35.0 37.0 9 37.78588394802211 39.0 38.0 39.0 35.0 39.0 10-11 37.71126769316339 39.0 37.5 39.0 35.0 39.0 12-13 37.68413960013703 39.0 37.0 39.0 35.0 39.0 14-15 39.02845685241333 40.0 38.0 41.0 36.0 41.0 16-17 39.01086953144238 40.0 38.0 41.0 36.0 41.0 18-19 38.97475752050883 40.0 38.5 41.0 35.0 41.0 20-21 38.96764472050993 40.0 38.0 41.0 35.0 41.0 22-23 38.8780758036061 40.0 38.0 41.0 35.0 41.0 24-25 38.816317491128714 40.0 38.0 41.0 35.0 41.0 26-27 38.67507968154584 40.0 38.0 41.0 34.0 41.0 28-29 38.554477606353245 40.0 38.0 41.0 34.0 41.0 30-31 38.41845532224496 40.0 38.0 41.0 34.0 41.0 32-33 38.26659644813412 40.0 38.0 41.0 34.0 41.0 34-35 38.360495624591124 40.0 38.0 41.0 34.0 41.0 36-37 38.35306572648861 40.0 38.0 41.0 34.0 41.0 38-39 38.28646723827666 40.0 38.0 41.0 34.0 41.0 40-41 38.265350286922676 40.0 38.0 41.0 33.5 41.0 42-43 38.32979642407197 40.0 38.0 41.0 34.0 41.0 44-45 38.29094169831255 40.0 38.0 41.0 33.5 41.0 46-47 38.20278495635421 40.0 38.0 41.0 33.0 41.0 48-49 38.100366226575126 40.0 37.0 41.0 33.0 41.0 50-51 37.986880805442425 40.0 37.0 41.0 33.0 41.0 52-53 37.83048027295962 40.0 37.0 41.0 33.0 41.0 54-55 37.6683562930597 40.0 36.0 41.0 33.0 41.0 56-57 37.554119993503505 39.0 36.0 41.0 32.0 41.0 58-59 37.348208416226726 39.0 35.5 41.0 32.0 41.0 60-61 37.136753710790565 39.0 35.0 41.0 32.0 41.0 62-63 36.8781900154296 38.5 35.0 40.0 31.0 41.0 64-65 36.57238323228229 38.0 35.0 40.0 31.0 41.0 66-67 36.28949329404924 37.0 35.0 40.0 31.0 41.0 68-69 35.997404380526355 37.0 35.0 39.5 31.0 41.0 70-71 35.68331040380047 36.0 34.0 39.0 30.5 41.0 72-73 35.222241289726874 36.0 34.0 39.0 30.0 40.5 74-75 34.95545276165757 35.0 34.0 38.0 30.0 40.0 76-77 33.69845309930977 34.5 32.5 36.5 28.5 39.0 78-79 34.37023161422691 35.0 34.0 37.0 29.5 39.0 80-81 34.26468826237824 35.0 34.0 36.0 30.0 39.0 82-83 34.027131891084665 35.0 34.0 36.0 30.0 37.5 84-85 33.8439010668677 35.0 34.0 35.5 30.0 37.0 86-87 33.66927092745689 35.0 33.0 35.0 29.5 37.0 88-89 33.51338752546832 35.0 33.0 35.0 29.0 36.0 90-91 33.39380973206782 35.0 33.0 35.0 29.0 36.0 92-93 33.3277140418556 35.0 33.0 35.0 29.0 36.0 94-95 33.26394417278832 35.0 33.0 35.0 29.0 35.5 96-97 33.30081624603207 35.0 33.0 35.0 29.0 35.0 98-99 33.39403955835876 35.0 33.0 35.0 30.0 35.0 100 32.21919110499189 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 38.0 21 223.0 22 986.0 23 3568.0 24 9276.0 25 20041.0 26 36566.0 27 57080.0 28 82550.0 29 110923.0 30 141205.0 31 176565.0 32 220391.0 33 282465.0 34 384719.0 35 548198.0 36 887519.0 37 1599413.0 38 2052553.0 39 1060649.0 40 48813.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.741255344233224 19.529668634882608 12.909772019949905 24.81930400093426 2 15.739059777470674 21.06334154437497 39.20490135227129 23.99269732588306 3 18.84683934453567 25.03725523858501 29.98713318640981 26.128772230469515 4 13.094578718668377 17.030868182356073 37.5900502165659 32.28450288240965 5 13.716038823648525 37.37530985612422 35.271240146944244 13.637411173283015 6 31.678410967942238 36.62292882236159 18.071645546086057 13.627014663610119 7 27.77305209156282 31.80702731550209 22.461523203896142 17.958397389038947 8 25.535925184489493 35.7313407250834 20.818835834321845 17.913898256105263 9 26.050623622268258 15.967057953485265 20.77728863688682 37.205029787359656 10-11 25.067111217795095 26.09612615432978 28.38179168501916 20.454970942855965 12-13 25.407477149041412 23.581219527415843 28.528158486827504 22.48314483671524 14-15 22.50506425250131 25.02314938891051 25.90715696761649 26.56462939097169 16-17 22.529288249510017 28.093246463568327 26.660735606789764 22.716729680131895 18-19 22.560620196469433 27.50361029479737 27.979797626695646 21.955971882037552 20-21 23.259596785272613 26.758854400206346 27.799611320922313 22.18193749359873 22-23 23.01894640172722 26.64929441607341 27.660849140346176 22.670910041853194 24-25 22.767125548000568 26.75245236285399 27.83574145550402 22.64468063364142 26-27 22.76424686886328 26.92471439009253 27.71439961680032 22.596639124243865 28-29 22.71534918489115 27.023111004825395 27.702722856766393 22.55881695351706 30-31 22.929327027263238 26.83148568771827 27.61816977329533 22.621017511723164 32-33 22.694775717413073 27.02092663542449 27.55675734382078 22.727540303341655 34-35 22.846777432324945 27.036102640680937 27.56595317730571 22.551166749688413 36-37 22.868406958751418 26.929899988959072 27.519076912428954 22.682616139860553 38-39 22.61045929910205 27.060085312667955 27.543381257979476 22.786074130250523 40-41 23.062211104428243 26.8264489018205 27.604035857338694 22.507304136412568 42-43 22.680835833612896 26.883981711983473 27.457077145034415 22.978105309369216 44-45 22.6506995337854 26.9896825012216 27.38026000269166 22.97935796230134 46-47 22.763093251796505 26.88172430017997 27.494081100038443 22.861101347985084 48-49 22.696990325239522 27.225910401422183 27.24757135887434 22.829527914463956 50-51 22.59444168734491 27.309670329670325 27.033888691953205 23.061999291031547 52-53 22.635925920312054 27.070343196852885 26.94386026560846 23.3498706172266 54-55 22.87278841648397 26.69426478920769 27.407966830950027 23.024979963358312 56-57 22.583909524697596 26.30444792574676 27.613444073563194 23.498198475992453 58-59 22.315826818613452 26.0702815324873 27.677843494124538 23.936048154774713 60-61 22.590861289649975 26.45080591493521 28.093547768931554 22.86478502648326 62-63 22.016215264021287 26.742307918897545 28.057674648003616 23.183802169077552 64-65 21.71532645787053 27.25100045573176 27.569591466443118 23.464081619954595 66-67 21.79543889071906 28.108322601898717 26.856690425563773 23.239548081818455 68-69 21.977971931845456 28.12527941927244 26.622468641662174 23.27428000721993 70-71 21.96644323554249 27.4321366342929 26.555127337578778 24.046292792585838 72-73 22.31341831292692 26.623720577424443 26.534146859869466 24.528714249779167 74-75 22.350721501514066 26.689814608097045 26.90985334623182 24.049610544157073 76-77 22.868098584566155 26.589713855110464 25.924881099359748 24.617306460963633 78-79 23.11939340209853 26.670757544807095 25.300673451676403 24.909175601417974 80-81 22.877125108670036 27.22150322756295 25.570139044069652 24.331232619697364 82-83 22.853470045688255 26.844174814450017 25.71900619347517 24.58334894638656 84-85 22.91983285898427 27.490722872675118 25.572663647032712 24.016780621307902 86-87 23.68762681327918 27.29719348649105 25.681398537319705 23.333781162910068 88-89 23.16606611431954 27.521339650072797 26.254342233270567 23.058252002337095 90-91 23.16671077200131 26.925946059428103 25.99627805012438 23.911065118446203 92-93 23.195803533557108 26.2209850172331 26.39025911518476 24.192952334025026 94-95 22.073180023880866 26.945564981844004 27.377761022309084 23.603493971966046 96-97 22.1227878805754 26.697613306230444 27.7069881590571 23.472610654137053 98-99 23.444884134418434 28.568847848029634 28.05430499655803 19.931963020993905 100 30.486272657169827 40.39377052866806 29.119956814162112 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1525.0 1 1353.0 2 1744.5 3 2461.0 4 3170.0 5 4911.0 6 6560.0 7 7700.5 8 8431.0 9 8372.0 10 7697.5 11 6993.5 12 7384.0 13 9188.5 14 13619.0 15 19765.5 16 24898.0 17 28103.0 18 29369.5 19 29022.0 20 27640.0 21 26180.0 22 25956.0 23 28448.0 24 33612.0 25 41446.5 26 52569.5 27 65519.5 28 79463.5 29 95151.0 30 110162.0 31 124074.0 32 139247.5 33 155542.0 34 171386.0 35 187246.5 36 205438.0 37 222653.5 38 236895.5 39 249672.5 40 263376.0 41 276959.5 42 287646.5 43 297044.0 44 308603.0 45 320658.0 46 330618.0 47 340532.0 48 347693.5 49 350263.5 50 350605.0 51 347415.0 52 337968.5 53 324841.5 54 310181.0 55 291799.0 56 270312.5 57 246951.5 58 221779.0 59 193741.0 60 164271.5 61 136864.0 62 112436.5 63 90355.5 64 70731.5 65 55455.0 66 43858.5 67 33650.5 68 24881.0 69 18764.0 70 13912.0 71 9990.5 72 7235.0 73 5090.5 74 3451.0 75 2391.5 76 1655.5 77 1084.5 78 726.0 79 494.0 80 329.5 81 219.0 82 156.0 83 109.0 84 72.5 85 48.0 86 30.0 87 19.5 88 12.5 89 7.5 90 6.0 91 5.0 92 3.5 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.004907127116603181 22-23 0.004473757591872756 24-25 0.0036004295131092548 26-27 0.017348010086721263 28-29 0.021977118642859117 30-31 0.03865451373777911 32-33 0.023990749386023216 34-35 0.01232241433417615 36-37 0.0068877468631091615 38-39 0.0024628221724892936 40-41 0.007559468937272463 42-43 0.009960478389478491 44-45 0.005392594552891716 46-47 0.0018964483813051717 48-49 0.009837914059514334 50-51 0.004714417930668281 52-53 0.0 54-55 2.493885882489665E-4 56-57 4.85141333799069E-4 58-59 3.429164184094679E-4 60-61 6.274674979048356E-4 62-63 7.665248522687603E-4 64-65 0.0 66-67 2.620459725967296E-4 68-69 4.7059866526074056E-4 70-71 2.1548093536272254E-4 72-73 6.317855523279894E-4 74-75 2.3708459913459378E-4 76-77 0.0 78-79 8.122192868617196E-6 80-81 3.626786223124999E-4 82-83 0.0029022708387437266 84-85 6.787723451856035E-5 86-87 7.147997918985281E-4 88-89 2.0129227892703517E-4 90-91 0.010064088650905354 92-93 9.161635099693557E-4 94-95 2.7774897418045538E-5 96-97 2.3785534399115558E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 200.0 20-21 508.0 22-23 1174.0 24-25 2540.0 26-27 4533.0 28-29 11386.0 30-31 24494.0 32-33 32426.0 34-35 45102.0 36-37 66906.0 38-39 41150.0 40-41 75134.0 42-43 80168.0 44-45 90927.0 46-47 89801.0 48-49 84874.0 50-51 43954.0 52-53 9069.0 54-55 8910.0 56-57 9228.0 58-59 47142.0 60-61 84639.0 62-63 82357.0 64-65 86253.0 66-67 90853.0 68-69 90510.0 70-71 88306.0 72-73 83567.0 74-75 84298.0 76-77 85120.0 78-79 89565.0 80-81 89497.0 82-83 84824.0 84-85 85982.0 86-87 91238.0 88-89 97693.0 90-91 101324.0 92-93 107163.0 94-95 128020.0 96-97 317583.0 98-99 1721295.0 100-101 3264033.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.2997957101682 #Duplication Level Percentage of deduplicated Percentage of total 1 90.57436139479987 78.16548884950173 2 6.681491948289767 11.53222780353081 3 1.5520685337876947 4.01829592182175 4 0.5518054528030879 1.9048279139465336 5 0.2414470804492161 1.0418416858791948 6 0.14398221843655792 0.7455381622183057 7 0.07634296386692338 0.4611867529936967 8 0.043120667469279624 0.29770438347879413 9 0.028474246305114453 0.221158947521915 >10 0.10456013038540725 1.3836261069005382 >50 0.0018679090015304536 0.10805830322009674 >100 4.3201477646630763E-4 0.08028186160509253 >500 2.271981491462958E-5 0.01707783100949373 >1k 2.2719814273009863E-5 0.022685476371961076 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5894171040839508E-5 2 0.0 7.768251312251853E-5 0.0 1.2947085520419754E-5 2.5894171040839508E-5 3 0.0 7.768251312251853E-5 0.0 5.1788342081679016E-5 2.5894171040839508E-5 4 0.0 1.2947085520419754E-4 0.0 5.1788342081679016E-5 2.5894171040839508E-5 5 0.0 1.424179407246173E-4 0.0 5.1788342081679016E-5 2.5894171040839508E-5 6 0.0 1.424179407246173E-4 0.0 6.473542760209877E-5 6.473542760209877E-5 7 0.0 1.424179407246173E-4 0.0 7.768251312251853E-5 6.473542760209877E-5 8 0.0 1.9420628280629633E-4 0.0 9.062959864293828E-5 6.473542760209877E-5 9 0.0 2.848358814492346E-4 0.0 9.062959864293828E-5 9.062959864293828E-5 10-11 1.2947085520419754E-5 2.848358814492346E-4 0.0 1.2299731244398766E-4 9.062959864293828E-5 12-13 2.5894171040839508E-5 2.848358814492346E-4 0.0 1.2947085520419754E-4 9.062959864293828E-5 14-15 2.5894171040839508E-5 4.531479932146914E-4 0.0 1.5536502624503707E-4 1.2299731244398766E-4 16-17 2.5894171040839508E-5 4.660950787351112E-4 0.0 1.683121117654568E-4 1.5536502624503707E-4 18-19 2.5894171040839508E-5 4.919892497759507E-4 0.0 2.3952108212776544E-4 1.8125919728587657E-4 20-21 2.5894171040839508E-5 5.178834208167902E-4 0.0 2.977829669696544E-4 1.8125919728587657E-4 22-23 2.5894171040839508E-5 6.020394766995186E-4 0.0 3.754654800921729E-4 2.2010045384713583E-4 24-25 2.5894171040839508E-5 7.574045029445557E-4 0.0 4.531479932146914E-4 2.7836233868902473E-4 26-27 3.2367713801049386E-5 8.156663877864446E-4 0.0 6.861955325822471E-4 2.848358814492346E-4 28-29 3.884125656125927E-5 8.350870160670742E-4 0.0 0.0018384861438996052 2.848358814492346E-4 30-31 6.473542760209877E-5 9.516107857508521E-4 0.0 0.005625508658622384 2.848358814492346E-4 32-33 6.473542760209877E-5 9.775049567916916E-4 0.0 0.0126493025534501 2.977829669696544E-4 34-35 6.473542760209877E-5 0.0011199228975163089 0.0 0.021291482138330285 3.366242235309136E-4 36-37 6.473542760209877E-5 0.0012429202099602966 0.0 0.039864076317372425 3.366242235309136E-4 38-39 7.120897036230865E-5 0.001268814381001136 0.0 0.28919904926961604 3.430977662911235E-4 40-41 7.768251312251853E-5 0.0013594439796440743 0.0 0.5495584655424971 3.4957130905133337E-4 42-43 7.768251312251853E-5 0.0013982852362053335 0.0 0.5929312020359033 3.4957130905133337E-4 44-45 7.768251312251853E-5 0.0015730708907310002 0.0 0.6507464124273377 3.5604485181154325E-4 46-47 7.768251312251853E-5 0.0017090152886954076 0.0 0.7144719673588438 3.754654800921729E-4 48-49 7.768251312251853E-5 0.0017090152886954076 0.0 0.7740285607527746 3.8841256561259266E-4 50-51 7.768251312251853E-5 0.001974430541864013 0.0 0.8282185871984915 3.8841256561259266E-4 52-53 7.768251312251853E-5 0.0019938511701446423 0.0 1.5333427588115922 4.013596511330124E-4 54-55 7.768251312251853E-5 0.0020003247129048523 0.0 2.4795351892721484 4.1430673665343213E-4 56-57 7.768251312251853E-5 0.0020715336832671607 0.0 3.5042840611278514 4.1430673665343213E-4 58-59 7.768251312251853E-5 0.0020780072260273706 0.0 4.5355453170003255 4.272538221738519E-4 60-61 9.062959864293828E-5 0.0021427426536294696 0.0 4.812153325601334 4.272538221738519E-4 62-63 9.062959864293828E-5 0.0021880574529509387 0.0 4.823287819148895 4.272538221738519E-4 64-65 9.062959864293828E-5 0.0023952108212776544 0.0 4.8334901225389855 4.337273649340618E-4 66-67 9.062959864293828E-5 0.002427578535078704 0.0 4.842158196294907 4.4020090769427165E-4 68-69 9.062959864293828E-5 0.0024664197916399633 0.0 4.850373122057613 4.4020090769427165E-4 70-71 9.062959864293828E-5 0.0025052610482012225 0.0 4.857286865725517 4.531479932146914E-4 72-73 9.062959864293828E-5 0.0025117345909614324 0.0 4.862057866739792 4.919892497759507E-4 74-75 9.062959864293828E-5 0.002537628762002272 0.0 4.866654082099541 4.919892497759507E-4 76-77 9.062959864293828E-5 0.0025958906468441607 0.0 4.87094604094956 4.919892497759507E-4 78-79 1.0357668416335803E-4 0.0026153112751247905 0.0 4.873613140566766 4.919892497759507E-4 80-81 1.0357668416335803E-4 0.0026217848178850004 0.0 4.8744935423821545 5.24356963577E-4 82-83 1.0357668416335803E-4 0.0026282583606452104 0.0 4.875289788141661 5.567246773780495E-4 84-85 1.0357668416335803E-4 0.0026541525316860497 0.0 4.875483994424467 5.696717628984692E-4 86-87 1.0357668416335803E-4 0.002692993788247309 0.0 4.875606991736911 5.696717628984692E-4 88 1.0357668416335803E-4 0.002744782130328988 0.0 4.875613465279671 5.696717628984692E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 10435 0.0 59.570847 94 TATCTCG 12940 0.0 52.69754 94 GGTATCA 6850 0.0 45.824924 1 CCGTCTT 5655 0.0 34.92668 90-91 GTATCAA 11855 0.0 34.204117 1 ATGCCGT 5975 0.0 32.919643 88-89 TATGCCG 5715 0.0 32.89841 86-87 TGCCGTC 5960 0.0 32.55246 88-89 GCCGTCT 6240 0.0 32.241184 90-91 CGTATGC 6170 0.0 30.23855 84-85 TCGTATG 6510 0.0 29.53974 84-85 CTCGTAT 6320 0.0 29.180906 82-83 CTATCTC 15825 0.0 28.856016 92-93 TCTCGTA 6510 0.0 28.502241 82-83 TCAACGC 14120 0.0 27.891857 4 ATCAACG 14265 0.0 27.549976 3 CGCTATC 16565 0.0 27.00508 92-93 CAACGCA 14725 0.0 26.717604 5 TATCAAC 15175 0.0 26.391699 2 GTATGCC 7420 0.0 26.283175 86-87 >>END_MODULE