##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140223_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4765099 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.369436815478544 33.0 31.0 34.0 31.0 34.0 2 32.65732674179487 34.0 31.0 34.0 31.0 34.0 3 32.3291125745761 33.0 31.0 34.0 30.0 34.0 4 36.18991777505567 37.0 35.0 37.0 35.0 37.0 5 36.07872260366469 37.0 35.0 37.0 35.0 37.0 6 36.166654249995645 37.0 36.0 37.0 35.0 37.0 7 36.14634050625181 37.0 36.0 37.0 35.0 37.0 8 36.150668852840205 37.0 37.0 37.0 35.0 37.0 9 37.97582736476199 39.0 38.0 39.0 35.0 39.0 10-11 37.90393074729403 39.0 38.0 39.0 35.0 39.0 12-13 37.872157640376415 39.0 38.0 39.0 35.0 39.0 14-15 39.26289674149477 41.0 39.0 41.0 36.0 41.0 16-17 39.25534506208581 41.0 39.0 41.0 36.0 41.0 18-19 39.235227641650255 41.0 39.0 41.0 36.0 41.0 20-21 39.22825136826118 40.5 39.0 41.0 36.0 41.0 22-23 39.16751760290899 40.0 39.0 41.0 36.0 41.0 24-25 39.11664038104479 40.0 39.0 41.0 36.0 41.0 26-27 38.96680029718978 40.0 38.5 41.0 35.0 41.0 28-29 38.855139312635536 40.0 38.0 41.0 35.0 41.0 30-31 38.727800223031664 40.0 38.0 41.0 35.0 41.0 32-33 38.57545836796912 40.0 38.0 41.0 34.5 41.0 34-35 38.65553623010237 40.0 38.0 41.0 35.0 41.0 36-37 38.646463023866346 40.0 38.0 41.0 35.0 41.0 38-39 38.60960800079247 40.0 38.0 41.0 35.0 41.0 40-41 38.54257728778178 40.0 38.0 41.0 34.0 41.0 42-43 38.51476465185229 40.0 38.0 41.0 34.0 41.0 44-45 38.56264198887321 40.0 38.0 41.0 34.0 41.0 46-47 38.520727449273615 40.0 38.0 41.0 34.0 41.0 48-49 38.44225292079735 40.0 38.0 41.0 34.0 41.0 50-51 38.35339766352401 40.0 38.0 41.0 34.0 41.0 52-53 38.15791491419916 40.0 37.0 41.0 33.0 41.0 54-55 38.05494441064194 40.0 37.0 41.0 33.0 41.0 56-57 37.917370598280186 40.0 37.0 41.0 33.0 41.0 58-59 37.735137829260026 39.5 36.0 41.0 33.0 41.0 60-61 37.542329792608456 39.0 36.0 41.0 33.0 41.0 62-63 37.2628709535468 39.0 35.0 41.0 32.0 41.0 64-65 36.95004133123837 38.5 35.0 40.0 32.0 41.0 66-67 36.66943312607855 38.0 35.0 40.0 31.5 41.0 68-69 36.37832848400828 37.0 35.0 40.0 31.0 41.0 70-71 36.07279359905192 37.0 35.0 39.0 31.0 41.0 72-73 35.735330412197285 36.0 34.5 39.0 31.0 41.0 74-75 35.38931615750567 36.0 34.0 39.0 31.0 40.0 76-77 34.1890764755114 35.0 32.5 37.0 29.5 39.0 78-79 34.780583023173335 35.0 34.0 37.0 30.5 39.0 80-81 34.640652621644094 35.0 34.0 37.0 31.0 39.0 82-83 34.41117982054688 35.0 34.0 36.0 31.0 38.5 84-85 34.21235884252927 35.0 34.0 36.0 30.5 37.0 86-87 33.99497073047041 35.0 34.0 35.5 30.0 37.0 88-89 33.83778862794158 35.0 34.0 35.0 30.0 36.5 90-91 33.67966073310997 35.0 34.0 35.0 30.0 36.0 92-93 33.57203238056367 35.0 34.0 35.0 30.0 36.0 94-95 33.542621815464585 35.0 34.0 35.0 30.0 36.0 96-97 33.556114636681656 35.0 34.0 35.0 30.0 35.0 98-99 33.61115221509064 35.0 34.0 35.0 30.0 35.0 100 32.53989659700074 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 6.0 20 22.0 21 101.0 22 447.0 23 1648.0 24 4339.0 25 9459.0 26 16971.0 27 27498.0 28 39611.0 29 53631.0 30 69714.0 31 88246.0 32 111139.0 33 144964.0 34 202131.0 35 293625.0 36 492555.0 37 959613.0 38 1347653.0 39 859897.0 40 41828.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.25937383462547 20.040129281679143 13.586769131134528 24.11372775256086 2 15.22776336860997 21.153012770563635 40.337357104228055 23.28186675659834 3 18.15139622492628 25.854027376975797 30.557980012587354 25.436596385510562 4 12.67598007932259 17.555354044060785 38.59378367584807 31.174882200768543 5 13.268328737765994 37.82609763196945 35.61909206923088 13.286481561033675 6 30.583351993316406 37.54364809629349 18.507611279429874 13.365388630960236 7 26.878224355884317 32.48089913766744 23.110243879508065 17.530632626940175 8 24.91211620157315 36.12090745648726 21.235193644455236 17.731782697484356 9 25.75650579347879 16.328349106702714 21.212990538076966 36.70215456174153 10-11 24.40354334715816 26.48184224504045 28.950300927640747 20.164313480160644 12-13 25.061924211857928 24.115312189736247 28.96873706086694 21.854026537538886 14-15 22.191490669973486 25.583403408827394 26.527350218746765 25.69775570245235 16-17 21.886942957533517 28.619310952406234 27.283651399477744 22.210094690582505 18-19 21.925036896042087 27.94611420275956 28.80201843516711 21.326830466031247 20-21 22.695371692816472 27.16479996272783 28.647292064690298 21.4925362797654 22-23 22.45666796864424 27.00628202429318 28.450952420030696 22.086097587031883 24-25 22.198706402488945 27.117893296049512 28.59235723612668 22.091043065334862 26-27 22.1268535471679 27.338903102938307 28.467777049863486 22.06646630003031 28-29 22.100168761891272 27.39945606574537 28.487198484305754 22.013176688057605 30-31 22.39878713956096 27.242312162071542 28.365151338575433 21.993749359792066 32-33 22.172123976833586 27.38432429599727 28.300715413509685 22.142836313659462 34-35 22.288501688624944 27.42845149463575 28.356526725349408 21.9265200913899 36-37 22.262394769101533 27.32065427665868 28.30287874339856 22.114072210841226 38-39 22.092739564708378 27.514444488507344 28.347804403262877 22.045011543521404 40-41 22.375143689215367 27.347337384290938 28.203351295550828 22.074167630942867 42-43 22.239434943721147 27.449570306391085 28.02586409975939 22.285130650128377 44-45 22.317154240884225 27.5315373008388 27.90947166121334 22.241836797063634 46-47 22.323150773419837 27.49250549927752 27.749999887148007 22.434343840154632 48-49 22.31517170438451 27.55332330421229 27.748039203914214 22.383465787488984 50-51 22.284987422265992 27.71518620741385 27.611332508245095 22.388493862075066 52-53 22.46553412926722 27.584763283813057 27.452333911153758 22.497368675765962 54-55 22.464962321290233 27.45225873996334 27.542003490599704 22.54077544814672 56-57 22.4216470239728 27.552594521663888 27.54806477253649 22.47769368182683 58-59 22.34263447169429 27.58182133707757 27.54731978918013 22.528224402048007 60-61 22.392913872084698 27.60652695549049 27.545644753457193 22.45491441896762 62-63 22.444323174802726 27.634323754607642 27.484943113174186 22.436409957415442 64-65 22.378631204051793 27.606494003146327 27.45429356074567 22.56058123205622 66-67 22.42543631881886 27.679428389291626 27.280933555876214 22.6142017360133 68-69 22.416241771110577 27.63572266062555 27.38673911237935 22.561296455884523 70-71 22.363189026442733 27.413073671445993 27.452819983772887 22.770917318338388 72-73 22.41495025687841 27.42629821884308 27.36821904298632 22.79053248129219 74-75 22.354874094901287 27.650314691806336 27.297058309260873 22.6977529040315 76-77 22.500282767626707 27.537385307736866 27.233134196374404 22.729197728262022 78-79 22.453660178866706 27.50210260723297 27.23574684205304 22.80849037184729 80-81 22.446285786093608 27.498932422975074 27.212280393999176 22.842501396932136 82-83 22.60281395145551 27.48736207875809 27.324693562974446 22.585130406811952 84-85 22.650452207755563 27.463284717744706 27.243506035460737 22.64275703903899 86-87 22.467144447149458 27.457065802325875 27.343070198664517 22.73271955186015 88-89 22.555569830716838 27.460463367718734 27.33409555665774 22.64987124490669 90-91 22.626249700611943 27.40412255631449 27.36923166858996 22.600396074483605 92-93 22.735899729182954 27.342604992831497 27.388637946983422 22.532857331002123 94-95 22.51511976000077 27.391525905668036 27.466238127034735 22.627116207296464 96-97 22.589131907607953 27.46276377845236 27.600807616356626 22.34729669758306 98-99 23.633832969897515 29.406265845792767 27.774698931061593 19.185202253248125 100 30.388662541198354 40.804804306546465 28.80653315225518 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 913.0 1 827.5 2 1200.0 3 1765.5 4 2296.0 5 3598.5 6 4833.0 7 5874.5 8 6684.5 9 6691.0 10 6029.5 11 5339.0 12 5608.0 13 7191.5 14 10914.0 15 16109.5 16 20367.0 17 22823.5 18 23539.5 19 23017.5 20 22022.5 21 21215.0 22 21397.0 23 23305.5 24 27652.5 25 34547.5 26 43771.5 27 53932.0 28 64001.5 29 75204.5 30 85491.5 31 94159.0 32 104319.0 33 115092.0 34 125358.0 35 135756.0 36 146859.0 37 156661.5 38 164721.5 39 171897.5 40 179332.0 41 185861.0 42 189981.0 43 195315.0 44 200830.0 45 204664.5 46 207011.5 47 208114.0 48 209311.5 49 209406.5 50 207217.5 51 203109.5 52 195816.5 53 186789.5 54 176822.5 55 165854.0 56 153150.0 57 138693.0 58 123913.0 59 107767.5 60 91632.0 61 75853.0 62 61256.0 63 48452.5 64 36978.5 65 27901.5 66 21027.0 67 16143.5 68 12392.5 69 9242.0 70 6788.5 71 4773.0 72 3385.5 73 2398.0 74 1625.5 75 1059.5 76 669.5 77 434.5 78 299.0 79 207.5 80 146.5 81 105.0 82 75.0 83 51.0 84 32.5 85 22.0 86 18.5 87 15.0 88 10.5 89 6.0 90 4.5 91 3.0 92 2.5 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 4.5119734133540566E-4 20-21 0.0 22-23 6.401407050257866E-4 24-25 0.006392003634940392 26-27 0.027885878721205678 28-29 0.026051955372580253 30-31 0.027963935048735337 32-33 0.04824008184762048 34-35 0.023285589211866083 36-37 0.018791752257225774 38-39 0.014136444270516376 40-41 0.007519210985578131 42-43 0.010314837883298495 44-45 0.004753735356101536 46-47 0.0035659957478886145 48-49 0.008050094457109748 50-51 0.001979339171573634 52-53 0.0018023646321754156 54-55 9.46915334524474E-4 56-57 0.0067342528424358585 58-59 0.00430795703935349 60-61 0.007876951450206976 62-63 0.006258017696380141 64-65 0.0012222255542918893 66-67 0.00447109786530626 68-69 0.012035693020127204 70-71 0.01575671940633833 72-73 0.005117315797287129 74-75 0.001607957525058802 76-77 0.0024540200275453465 78-79 0.0029922027371835605 80-81 0.0037457439867380872 82-83 0.0035595478627857453 84-85 0.004182615621267799 86-87 1.4808468015115892E-5 88-89 2.861718163536047E-4 90-91 0.00401980875836546 92-93 4.5360163609417704E-4 94-95 0.001948837582278485 96-97 2.625960773397967E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 312.0 22-23 600.0 24-25 1453.0 26-27 1654.0 28-29 6611.0 30-31 15269.0 32-33 19805.0 34-35 27035.0 36-37 40596.0 38-39 45300.0 40-41 46495.0 42-43 53997.0 44-45 59993.0 46-47 59176.0 48-49 54568.0 50-51 48554.0 52-53 46881.0 54-55 50665.0 56-57 52886.0 58-59 51322.0 60-61 50490.0 62-63 50099.0 64-65 53395.0 66-67 54870.0 68-69 54590.0 70-71 53613.0 72-73 51326.0 74-75 53228.0 76-77 53624.0 78-79 55635.0 80-81 54112.0 82-83 52904.0 84-85 53577.0 86-87 56203.0 88-89 59284.0 90-91 62500.0 92-93 65166.0 94-95 73288.0 96-97 165676.0 98-99 955511.0 100-101 1952748.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.85072113887175 #Duplication Level Percentage of deduplicated Percentage of total 1 91.98889166448427 81.73279361154975 2 5.981592411654939 10.629375986686886 3 1.209878931108654 3.224958465591938 4 0.38956113489723865 1.3845115105318777 5 0.17104755864854856 0.7598849467483497 6 0.09155396412193864 0.4880781441213984 7 0.05209728166378427 0.32402167316415065 8 0.03464949198165286 0.24629058797323292 9 0.019947870014789485 0.15951443723986697 >10 0.05849917608916021 0.8040157972286432 >50 0.001513561027523062 0.08864198876762346 >100 7.669543075341169E-4 0.1579128503962584 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0985922852809565E-5 2 0.0 4.197184570561913E-5 0.0 0.0 2.0985922852809565E-5 3 0.0 4.197184570561913E-5 0.0 0.0 2.0985922852809565E-5 4 0.0 6.295776855842869E-5 0.0 0.0 2.0985922852809565E-5 5 0.0 1.4690145996966694E-4 0.0 0.0 2.0985922852809565E-5 6 0.0 1.4690145996966694E-4 0.0 0.0 4.197184570561913E-5 7 0.0 1.4690145996966694E-4 0.0 0.0 4.197184570561913E-5 8 0.0 1.4690145996966694E-4 0.0 0.0 4.197184570561913E-5 9 0.0 2.308451513809052E-4 0.0 0.0 6.295776855842869E-5 10-11 2.0985922852809565E-5 2.308451513809052E-4 0.0 3.1478884279214346E-5 8.394369141123826E-5 12-13 2.0985922852809565E-5 2.4133811280731E-4 0.0 4.197184570561913E-5 1.4690145996966694E-4 14-15 2.0985922852809565E-5 3.462677270713578E-4 0.0 4.197184570561913E-5 1.4690145996966694E-4 16-17 2.0985922852809565E-5 4.092254956297865E-4 0.0 4.197184570561913E-5 1.5739442139607173E-4 18-19 2.0985922852809565E-5 4.931691870410247E-4 0.0 6.295776855842869E-5 1.9936626710169084E-4 20-21 2.0985922852809565E-5 5.456339941730487E-4 0.0 3.1478884279214346E-4 2.0985922852809563E-4 22-23 4.197184570561913E-5 5.876058398786679E-4 0.0 0.0011961976026101451 2.3084515138090518E-4 24-25 4.197184570561913E-5 6.295776855842869E-4 0.0 0.003021972890804577 2.728169970865243E-4 26-27 4.197184570561913E-5 6.295776855842869E-4 0.0 0.007324087075630538 2.938029199393339E-4 28-29 4.197184570561913E-5 6.295776855842869E-4 0.0 0.028467404349836176 2.938029199393339E-4 30-31 4.197184570561913E-5 6.715495312899061E-4 0.0 0.031940574581976154 2.938029199393339E-4 32-33 4.197184570561913E-5 6.715495312899061E-4 0.0 0.03922268981190108 2.938029199393339E-4 34-35 4.197184570561913E-5 7.659861841275491E-4 0.0 0.04816269294719795 2.938029199393339E-4 36-37 4.197184570561913E-5 8.499298755387873E-4 0.0 0.06281086709845903 2.938029199393339E-4 38-39 4.197184570561913E-5 8.814087598180017E-4 0.0 0.09543348417315149 2.938029199393339E-4 40-41 4.197184570561913E-5 9.863383740820494E-4 0.0 0.13000779207315524 2.938029199393339E-4 42-43 4.197184570561913E-5 0.001059789104066883 0.0 0.15481315288517616 3.0429588136573864E-4 44-45 4.197184570561913E-5 0.0011857046411837403 0.0 0.18294478246936735 3.1478884279214346E-4 46-47 4.197184570561913E-5 0.0012591553711685738 0.0 0.21408789198293676 3.3577476564495304E-4 48-49 4.197184570561913E-5 0.0012696483325949786 0.0 0.2430799444040932 3.5676068849776257E-4 50-51 4.197184570561913E-5 0.0014165497925646454 0.0 0.2699104467714102 3.5676068849776257E-4 52-53 4.197184570561913E-5 0.0014270427539910503 0.0 0.3314411725758478 3.7774661135057215E-4 54-55 6.295776855842869E-5 0.0015319723682550982 0.0 0.40600415647188026 3.9873253420338173E-4 56-57 6.295776855842869E-5 0.0015739442139607173 0.0 0.47777601262848896 3.9873253420338173E-4 58-59 6.295776855842869E-5 0.001584437175387122 0.0 0.5270509594868857 3.9873253420338173E-4 60-61 9.443665283764304E-5 0.0016264090210927412 0.0 0.5617301970011537 3.9873253420338173E-4 62-63 1.0492961426404781E-4 0.001636901982519146 0.0 0.5901451365438577 3.9873253420338173E-4 64-65 1.0492961426404781E-4 0.0017208456739303843 0.0 0.6052340150750278 3.9873253420338173E-4 66-67 1.2591553711685738E-4 0.0017628175196360034 0.0 0.61903225935075 3.9873253420338173E-4 68-69 1.2591553711685738E-4 0.0018047893653416226 0.0 0.630826347994029 3.9873253420338173E-4 70-71 1.2591553711685738E-4 0.0018467612110472415 0.0 0.6388639564466552 3.9873253420338173E-4 72-73 1.2591553711685738E-4 0.001867747133900051 0.0 0.6447714937297211 4.4070437990900084E-4 74-75 1.2591553711685738E-4 0.0018887330567528607 0.0 0.6501543829414667 4.4070437990900084E-4 76-77 1.2591553711685738E-4 0.0018887330567528607 0.0 0.6548972015062017 4.4070437990900084E-4 78-79 1.2591553711685738E-4 0.001920211941032075 0.0 0.6583388928540624 4.4070437990900084E-4 80-81 1.2591553711685738E-4 0.0019307049024584798 0.0 0.6594091749195556 4.4070437990900084E-4 82-83 1.2591553711685738E-4 0.0019307049024584798 0.0 0.6602171329493889 4.721832641882152E-4 84-85 1.2591553711685738E-4 0.0019516908253112894 0.0 0.6605214288307546 4.8267622561461995E-4 86-87 1.2591553711685738E-4 0.0019516908253112894 0.0 0.6606053725221659 4.8267622561461995E-4 88 1.2591553711685738E-4 0.002014648593869718 0.0 0.6606158654835923 4.8267622561461995E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5145 0.0 47.505875 1 GTATCAA 9330 0.0 34.74041 1 TCAACGC 10940 0.0 28.92148 4 ATCAACG 11070 0.0 28.65532 3 CAACGCA 11110 0.0 28.47894 5 AACGCAG 11550 0.0 27.429237 6 TATCAAC 11645 0.0 27.41501 2 ACGCAGA 13635 0.0 23.264715 7 CGCAGAG 13935 0.0 22.705488 8 GTACATG 13955 0.0 20.050116 1 TACATGG 13680 0.0 19.888327 2 ACATGGG 13860 0.0 19.160559 3 GCAGAGT 16585 0.0 19.003975 9 GAGTACT 9115 0.0 18.025318 12-13 CATGGGG 10150 0.0 17.429361 4 CAGAGTA 16165 0.0 17.082535 10-11 AGAGTAC 14900 0.0 16.977055 10-11 GTGGTAT 2615 0.0 16.640652 1 GTATAGG 1490 0.0 15.557752 1 GTACTTT 10585 0.0 15.426391 14-15 >>END_MODULE