##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140221_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8114444 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34641868253697 33.0 31.0 34.0 31.0 34.0 2 32.63548026211038 34.0 31.0 34.0 31.0 34.0 3 32.304914298502766 33.0 31.0 34.0 30.0 34.0 4 36.17806333989119 37.0 35.0 37.0 35.0 37.0 5 36.06106086874221 37.0 35.0 37.0 35.0 37.0 6 36.15003307681956 37.0 36.0 37.0 35.0 37.0 7 36.12892737937436 37.0 36.0 37.0 35.0 37.0 8 36.12934268817432 37.0 36.0 37.0 35.0 37.0 9 37.9487865095871 39.0 38.0 39.0 35.0 39.0 10-11 37.87323222638544 39.0 38.0 39.0 35.0 39.0 12-13 37.83909378141004 39.0 38.0 39.0 35.0 39.0 14-15 39.22022223580568 41.0 39.0 41.0 36.0 41.0 16-17 39.20800297592786 41.0 39.0 41.0 36.0 41.0 18-19 39.17986438750455 40.5 39.0 41.0 36.0 41.0 20-21 39.172593168673885 40.0 39.0 41.0 36.0 41.0 22-23 39.11186922428916 40.0 39.0 41.0 36.0 41.0 24-25 39.05868595820182 40.0 39.0 41.0 35.0 41.0 26-27 38.901224630208844 40.0 38.0 41.0 35.0 41.0 28-29 38.78204942535962 40.0 38.0 41.0 35.0 41.0 30-31 38.65258054879415 40.0 38.0 41.0 35.0 41.0 32-33 38.496655081762015 40.0 38.0 41.0 34.0 41.0 34-35 38.58245295627951 40.0 38.0 41.0 34.0 41.0 36-37 38.572492969827024 40.0 38.0 41.0 34.0 41.0 38-39 38.52554025273727 40.0 38.0 41.0 34.0 41.0 40-41 38.45732791789934 40.0 38.0 41.0 34.0 41.0 42-43 38.42856885043228 40.0 38.0 41.0 34.0 41.0 44-45 38.47580910128163 40.0 38.0 41.0 34.0 41.0 46-47 38.42925138382195 40.0 38.0 41.0 34.0 41.0 48-49 38.34548428307876 40.0 38.0 41.0 34.0 41.0 50-51 38.24964804040417 40.0 37.5 41.0 33.5 41.0 52-53 38.046754676454825 40.0 37.0 41.0 33.0 41.0 54-55 37.94092873272509 40.0 37.0 41.0 33.0 41.0 56-57 37.79677394948038 40.0 36.5 41.0 33.0 41.0 58-59 37.60864415308099 39.0 36.0 41.0 33.0 41.0 60-61 37.41385548919909 39.0 35.5 41.0 32.5 41.0 62-63 37.132683663162425 39.0 35.0 40.5 32.0 41.0 64-65 36.81708496970044 38.0 35.0 40.0 31.5 41.0 66-67 36.53556960787889 37.5 35.0 40.0 31.0 41.0 68-69 36.2428481066458 37.0 35.0 40.0 31.0 41.0 70-71 35.942724041557966 36.5 35.0 39.0 31.0 41.0 72-73 35.60515030779136 36.0 34.0 39.0 31.0 40.5 74-75 35.258268898444214 35.5 34.0 38.5 30.0 40.0 76-77 34.07933816182982 35.0 32.5 37.0 29.5 39.0 78-79 34.679192484168794 35.0 34.0 37.0 30.0 39.0 80-81 34.54385970305161 35.0 34.0 37.0 30.0 39.0 82-83 34.315815088437446 35.0 34.0 36.0 30.0 38.0 84-85 34.1211349001166 35.0 34.0 36.0 30.0 37.0 86-87 33.90355274458524 35.0 34.0 35.5 30.0 37.0 88-89 33.74584490705699 35.0 34.0 35.0 30.0 36.5 90-91 33.58810986067131 35.0 34.0 35.0 30.0 36.0 92-93 33.48237077379133 35.0 33.5 35.0 30.0 36.0 94-95 33.461236202342974 35.0 33.0 35.0 30.0 36.0 96-97 33.47940018662939 35.0 33.0 35.0 30.0 35.0 98-99 33.54166596616228 35.0 33.0 35.0 30.0 35.0 100 32.43332444235 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 36.0 21 164.0 22 883.0 23 3050.0 24 8058.0 25 17441.0 26 31698.0 27 50749.0 28 73281.0 29 99127.0 30 128010.0 31 161000.0 32 203213.0 33 262900.0 34 365984.0 35 529487.0 36 878437.0 37 1669497.0 38 2250656.0 39 1319191.0 40 61577.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.954310116626594 20.054152816878148 13.926068132332912 24.06546893416234 2 15.18354184217674 20.858385368116412 40.66101140139731 23.297061388309537 3 18.322795745463274 25.554381791284776 30.35144490491277 25.771377558339182 4 12.815197196505393 17.549508013118338 38.272739327549736 31.362555462826535 5 13.43420448770119 37.68317336344918 35.44813421597339 13.434487932876237 6 30.865663747263522 37.26040872301294 18.378486560508644 13.495440969214897 7 27.305592348656297 32.34413842772222 22.65301233208338 17.697256891538103 8 25.007418869364308 36.31168075101633 20.840072345067632 17.84082803455172 9 25.743698520810543 16.621656394449207 21.123246398644195 36.51139868609605 10-11 24.690163614414 26.447117017506066 28.54279356663254 20.319925801447393 12-13 25.292823513231465 23.963878486314037 28.698559014024866 22.044738986429632 14-15 22.362382438032725 25.466982087743784 26.26788723910104 25.90274823512246 16-17 22.089511000384007 28.500510940737282 27.014395564255544 22.395582494623167 18-19 22.113154782822164 27.805104716018075 28.5608169231521 21.52092357800766 20-21 22.907138971085594 26.978736651366898 28.41164907306949 21.70247530447802 22-23 22.6660266610924 26.89172735072326 28.241427127797706 22.200818860386633 24-25 22.38719964967296 27.04613872191287 28.385261853927336 22.18139977448683 26-27 22.347961783046625 27.199417740413377 28.27663498368563 22.175985492854366 28-29 22.28573763428171 27.30772703821156 28.24118036742762 22.16535496007911 30-31 22.59144764685351 27.164698555633297 28.135038352293627 22.10881544521957 32-33 22.357504718226647 27.288645336573865 28.121114524696573 22.23273542050292 34-35 22.47227516692597 27.30736331557864 28.137510267448157 22.082851250047224 36-37 22.47915697676784 27.208303297385335 28.05890507100689 22.253634654839935 38-39 22.293151355239733 27.339703475103416 28.16863492329471 22.198510246362144 40-41 22.548723093797385 27.178278426823717 28.049856416894404 22.223142062484502 42-43 22.44992586068745 27.251066878482877 27.884479718889054 22.41452754194062 44-45 22.49586519480302 27.420672786241102 27.706196817181734 22.377265201774144 46-47 22.57397923579994 27.36398430944996 27.42978084787424 22.632255606875862 48-49 22.510567983824494 27.422347469447843 27.51000620514616 22.5570783415815 50-51 22.444303595319422 27.583714008761746 27.40876515834983 22.563217237569003 52-53 22.59955458829594 27.508312731069783 27.308297228935935 22.58383545169834 54-55 22.62796750802428 27.39926344600687 27.30655562363199 22.666213422336863 56-57 22.617869203242453 27.498533885924974 27.275972508492107 22.607624402340466 58-59 22.514763474634865 27.579116381970227 27.365972950028443 22.540147193366465 60-61 22.617306207835888 27.552920214864706 27.341598308122038 22.48817526917737 62-63 22.610563378618167 27.63033464736161 27.24316981959724 22.515932154422984 64-65 22.491829280589428 27.65023131943465 27.225551523107804 22.632387876868123 66-67 22.623301897935242 27.687149158067285 27.033787801830673 22.6557611421668 68-69 22.529574401992804 27.618388512515217 27.180814852006662 22.671222233485317 70-71 22.53621588778184 27.373737168752125 27.21126859649206 22.878778346973974 72-73 22.662460622546472 27.391734257463952 27.136440841225056 22.809364278764523 74-75 22.48235872173817 27.606543572288295 27.154643790595767 22.756453915377765 76-77 22.6550689751642 27.500499797429995 27.021856040250768 22.822575187155035 78-79 22.5762555005078 27.512811906745544 27.018732869107996 22.892199723638658 80-81 22.610687388438983 27.513258399722424 27.06019584531572 22.815858366522875 82-83 22.64326264254993 27.50751023281397 27.19488420993844 22.654342914697654 84-85 22.77386759885727 27.544697219865256 27.015642525569184 22.665792655708294 86-87 22.57052611556155 27.551579548052203 27.127121373163117 22.750772963223138 88-89 22.63594311122283 27.536561199796978 27.106505161832732 22.72099052714746 90-91 22.69411048006843 27.585528246085524 27.083571524011685 22.636789749834357 92-93 22.787426756567662 27.52708129970614 27.12609426007685 22.559397683649347 94-95 22.498254708981374 27.62140389003644 27.232273429432325 22.64806797154986 96-97 22.55125493588801 27.739296361589943 27.336604549140304 22.372844153381745 98-99 23.70066096140772 29.659203603203068 27.456772035536027 19.18336339985319 100 22.64982975755311 30.650095634882252 21.224105188570512 25.475969418994122 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1812.0 1 1610.5 2 2061.5 3 2895.0 4 3702.0 5 5616.5 6 7445.0 7 8892.0 8 9907.5 9 9961.0 10 9239.0 11 8373.0 12 8885.5 13 11397.5 14 17171.0 15 25434.0 16 32474.0 17 37021.0 18 39028.0 19 38369.0 20 36065.5 21 33760.5 22 33080.0 23 35183.5 24 40854.0 25 50111.5 26 62827.5 27 77109.0 28 92832.5 29 111641.5 30 129519.0 31 146931.5 32 165787.0 33 183497.0 34 201538.5 35 219924.0 36 240165.0 37 260103.5 38 273863.0 39 284199.0 40 297130.0 41 308572.5 42 316331.0 43 325428.5 44 333829.0 45 342878.5 46 350222.0 47 355145.5 48 358212.0 49 355375.5 50 351321.0 51 345731.0 52 334528.0 53 318713.5 54 302015.0 55 283530.0 56 263403.5 57 241087.0 58 217177.0 59 191799.0 60 162149.0 61 132931.5 62 106534.0 63 83410.0 64 64407.5 65 49378.0 66 37641.5 67 28937.5 68 22214.0 69 16478.5 70 11939.0 71 8562.0 72 6107.0 73 4252.0 74 2835.5 75 1890.0 76 1300.5 77 852.0 78 564.5 79 392.0 80 266.5 81 182.5 82 130.5 83 85.0 84 55.0 85 39.0 86 29.0 87 22.0 88 15.5 89 9.0 90 6.5 91 5.5 92 4.0 93 2.5 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.60728498465206E-4 20-21 0.0 22-23 6.162552608170978E-4 24-25 0.007014432101591659 26-27 0.029073684061239103 28-29 0.027939932846667584 30-31 0.02884908824397182 32-33 0.049672190812615716 34-35 0.024386340363867345 36-37 0.019462072082383514 38-39 0.015309566435223283 40-41 0.007628930840019729 42-43 0.010569570796442846 44-45 0.004822435710376583 46-47 0.0035399359948047665 48-49 0.008530600706432067 50-51 0.002061655590024676 52-53 0.002068264668980682 54-55 0.0010751197834092446 56-57 0.006423354430730213 58-59 0.004172108433098176 60-61 0.00782271643226363 62-63 0.006076930939437693 64-65 0.0012233037482026845 66-67 0.004462031082845557 68-69 0.011634427874783282 70-71 0.015105130581599381 72-73 0.004990884028592896 74-75 0.0016247091308653156 76-77 0.0025028230830772746 78-79 0.0026935539698957033 80-81 0.003763434962358844 82-83 0.0033523802102421304 84-85 0.004137888937909208 86-87 4.171413387483841E-5 88-89 2.794818643371317E-4 90-91 0.004287248397490256 92-93 7.621937196814451E-4 94-95 0.0023040793546363035 96-97 5.226045252600897E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 506.0 22-23 1250.0 24-25 2916.0 26-27 4572.0 28-29 9362.0 30-31 22265.0 32-33 29185.0 34-35 40304.0 36-37 60678.0 38-39 67915.0 40-41 69394.0 42-43 80416.0 44-45 89613.0 46-47 88957.0 48-49 82313.0 50-51 73959.0 52-53 70495.0 54-55 76301.0 56-57 81193.0 58-59 79641.0 60-61 78441.0 62-63 77137.0 64-65 81873.0 66-67 85248.0 68-69 86099.0 70-71 82572.0 72-73 78557.0 74-75 80261.0 76-77 81586.0 78-79 85526.0 80-81 85323.0 82-83 82001.0 84-85 83377.0 86-87 88313.0 88-89 93720.0 90-91 100164.0 92-93 104604.0 94-95 126455.0 96-97 293579.0 98-99 514309.0 100-101 4693894.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.8122717787066 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4394979895681 75.85567011242333 2 7.222781079261351 12.251609437848268 3 1.9038323237509935 4.8440503338916745 4 0.6673017195837491 2.263814991989408 5 0.3062999585663979 1.2988997665869957 6 0.17169063153059022 0.8736883501938113 7 0.08919225673794585 0.5295218543310387 8 0.06031386789016723 0.40922849244206955 9 0.036414871328079725 0.27795851674773553 >10 0.10126060937993382 1.261707169180686 >50 0.0010231874252095417 0.056502532353920026 >100 3.685758163325208E-4 0.06107151862810802 >500 2.2929161057919222E-5 0.016276923382957578 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.929481305188624E-5 0.0 0.0 0.0 3 0.0 4.929481305188624E-5 0.0 0.0 0.0 4 0.0 9.858962610377248E-5 0.0 0.0 0.0 5 0.0 1.1091332936674404E-4 0.0 0.0 0.0 6 0.0 1.1091332936674404E-4 2.464740652594312E-5 0.0 1.232370326297156E-5 7 0.0 1.1091332936674404E-4 2.464740652594312E-5 0.0 1.232370326297156E-5 8 0.0 1.232370326297156E-4 2.464740652594312E-5 0.0 2.464740652594312E-5 9 0.0 2.711214717853743E-4 3.697110978891468E-5 2.464740652594312E-5 2.464740652594312E-5 10-11 0.0 2.711214717853743E-4 5.545666468337203E-5 7.394221957782937E-5 2.464740652594312E-5 12-13 0.0 2.772833234168601E-4 7.394221957782937E-5 7.394221957782937E-5 2.464740652594312E-5 14-15 0.0 4.128440593095473E-4 7.394221957782937E-5 7.394221957782937E-5 4.3132961420400465E-5 16-17 0.0 4.1900591094103307E-4 8.010407120931514E-5 8.010407120931514E-5 4.929481305188624E-5 18-19 0.0 4.4365331746697617E-4 9.242777447228669E-5 9.858962610377248E-5 6.778036794634359E-5 20-21 0.0 4.6830072399291927E-4 9.858962610377248E-5 1.4172258752417294E-4 7.394221957782937E-5 22-23 0.0 5.730522017281776E-4 9.858962610377248E-5 1.9717925220754496E-4 7.394221957782937E-5 24-25 0.0 6.16185163148578E-4 1.1091332936674404E-4 2.834451750483459E-4 8.626592284080092E-5 26-27 0.0 6.408325696745211E-4 1.293988842612014E-4 3.3890183973171793E-4 8.626592284080092E-5 28-29 0.0 6.531562729374927E-4 1.3556073589268716E-4 9.057921898284097E-4 8.626592284080092E-5 30-31 0.0 7.086129376208647E-4 1.3556073589268716E-4 0.0028529373053779164 8.626592284080092E-5 32-33 0.0 7.332603441468078E-4 1.3556073589268716E-4 0.007098453079471619 8.626592284080092E-5 34-35 0.0 8.811447833024667E-4 1.4172258752417294E-4 0.01228057030155116 8.626592284080092E-5 36-37 0.0 0.0010167055191951538 1.6020814241863028E-4 0.02164042292977806 8.626592284080092E-5 38-39 0.0 0.0010536766289840683 1.6020814241863028E-4 0.045191019865316706 8.626592284080092E-5 40-41 0.0 0.001121456996930412 1.7253184568160183E-4 0.07038066933483059 8.626592284080092E-5 42-43 0.0 0.0011399425518248693 1.7253184568160183E-4 0.08628440839569537 8.626592284080092E-5 44-45 0.0 0.0012262084746656704 1.848555489445734E-4 0.1062118365719204 8.626592284080092E-5 46-47 0.0 0.0013063125458749854 1.848555489445734E-4 0.12783993579843547 9.858962610377248E-5 48-49 6.16185163148578E-6 0.0013247981007694428 1.848555489445734E-4 0.14786595360076427 1.1091332936674404E-4 50-51 1.232370326297156E-5 0.001515815501345502 1.848555489445734E-4 0.16679516181268858 1.1091332936674404E-4 52-53 1.232370326297156E-5 0.0015281392046084736 1.848555489445734E-4 0.2159236048705247 1.293988842612014E-4 54-55 1.232370326297156E-5 0.001540462907871445 1.9717925220754496E-4 0.2746214035120582 1.4788443915565873E-4 56-57 1.232370326297156E-5 0.001565110314397388 1.9717925220754496E-4 0.3305771781775806 1.4788443915565873E-4 58-59 1.232370326297156E-5 0.0015712721660288739 1.9717925220754496E-4 0.3667410854027707 1.4788443915565873E-4 60-61 1.232370326297156E-5 0.001626728830712246 1.9717925220754496E-4 0.39180749783965485 1.4788443915565873E-4 62-63 1.232370326297156E-5 0.0016636999405011607 1.9717925220754496E-4 0.41185200119687804 1.4788443915565873E-4 64-65 1.232370326297156E-5 0.0017869369731308763 1.9717925220754496E-4 0.42108245494084373 1.4788443915565873E-4 66-67 1.232370326297156E-5 0.001793098824762362 1.9717925220754496E-4 0.42979531314776465 1.4788443915565873E-4 68-69 1.232370326297156E-5 0.0018054225280253336 1.9717925220754496E-4 0.4375592462034368 1.4788443915565873E-4 70-71 1.232370326297156E-5 0.0018115843796568194 1.9717925220754496E-4 0.44421404596544134 1.4788443915565873E-4 72-73 1.232370326297156E-5 0.0018115843796568194 1.9717925220754496E-4 0.4489340243151595 1.4788443915565873E-4 74-75 1.232370326297156E-5 0.0018423936378142484 1.9717925220754496E-4 0.4528036671397325 1.4788443915565873E-4 76-77 1.232370326297156E-5 0.0019409832639180208 1.9717925220754496E-4 0.45637754108599426 1.4788443915565873E-4 78-79 1.232370326297156E-5 0.0019717925220754497 1.9717925220754496E-4 0.4592489639462667 1.4788443915565873E-4 80-81 1.232370326297156E-5 0.0019717925220754497 1.9717925220754496E-4 0.4600992994714117 1.6020814241863028E-4 82-83 1.232370326297156E-5 0.0019717925220754497 2.0334110383903075E-4 0.46057992389866764 1.7253184568160183E-4 84-85 1.232370326297156E-5 0.001996439928601393 2.0950295547051654E-4 0.46083255981555854 1.7253184568160183E-4 86-87 1.232370326297156E-5 0.002045734741653279 2.0950295547051654E-4 0.4609557968481882 1.7253184568160183E-4 88 1.232370326297156E-5 0.002181295477545966 2.0950295547051654E-4 0.4609804442547142 1.7253184568160183E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9180 0.0 46.104877 1 GTATCAA 16110 0.0 35.56871 1 ATCAACG 19410 0.0 28.839397 3 TCAACGC 19410 0.0 28.81808 4 CAACGCA 19815 0.0 28.249945 5 TATCAAC 20560 0.0 27.64888 2 AACGCAG 20385 0.0 27.439732 6 ACGCAGA 23415 0.0 23.835907 7 CGCAGAG 24050 0.0 23.223763 8 GTACATG 24065 0.0 21.799538 1 TACATGG 23925 0.0 21.667711 2 ACATGGG 24240 0.0 20.686354 3 GCAGAGT 28305 0.0 19.601059 9 CATGGGG 18995 0.0 19.058235 4 GTGGTAT 4905 0.0 18.72526 1 GAGTACT 15570 0.0 18.09563 12-13 AGAGTAC 25445 0.0 17.527914 10-11 CAGAGTA 27665 0.0 17.467312 10-11 TGGTATC 4910 0.0 16.768164 2 GTACTTT 17260 0.0 16.38414 14-15 >>END_MODULE