##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140212_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10995510 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26000922194605 33.0 31.0 34.0 31.0 34.0 2 32.56613244860857 34.0 31.0 34.0 31.0 34.0 3 32.211589457878716 33.0 31.0 34.0 30.0 34.0 4 36.12496100681096 37.0 35.0 37.0 35.0 37.0 5 35.99167623875564 37.0 35.0 37.0 35.0 37.0 6 36.091333917208026 37.0 35.0 37.0 35.0 37.0 7 36.06724653972394 37.0 35.0 37.0 35.0 37.0 8 36.070774707130454 37.0 36.0 37.0 35.0 37.0 9 37.877661063470455 39.0 38.0 39.0 35.0 39.0 10-11 37.795655135596256 39.0 38.0 39.0 35.0 39.0 12-13 37.75529529780792 39.0 38.0 39.0 35.0 39.0 14-15 39.09699149925743 40.0 38.5 41.0 36.0 41.0 16-17 39.07840395761542 40.0 38.0 41.0 36.0 41.0 18-19 39.04925469578036 40.0 38.5 41.0 36.0 41.0 20-21 39.03700654588317 40.0 39.0 41.0 35.5 41.0 22-23 38.963279657431706 40.0 38.0 41.0 35.0 41.0 24-25 38.896653115221476 40.0 38.0 41.0 35.0 41.0 26-27 38.72562263855413 40.0 38.0 41.0 35.0 41.0 28-29 38.589201378733435 40.0 38.0 41.0 34.0 41.0 30-31 38.44063344108696 40.0 38.0 41.0 34.0 41.0 32-33 38.26109623140301 40.0 38.0 41.0 34.0 41.0 34-35 38.36613788609282 40.0 38.0 41.0 34.0 41.0 36-37 38.352516541711864 40.0 38.0 41.0 34.0 41.0 38-39 38.297008470798815 40.0 38.0 41.0 34.0 41.0 40-41 38.20586271174113 40.0 38.0 41.0 33.5 41.0 42-43 38.16710717127408 40.0 38.0 41.0 33.0 41.0 44-45 38.209365911183816 40.0 38.0 41.0 33.0 41.0 46-47 38.143984988336214 40.0 37.5 41.0 33.0 41.0 48-49 38.040373188373565 40.0 37.0 41.0 33.0 41.0 50-51 37.92538273043749 40.0 37.0 41.0 33.0 41.0 52-53 37.701065174532246 40.0 36.5 41.0 33.0 41.0 54-55 37.57625862597105 39.0 36.0 41.0 32.5 41.0 56-57 37.41885866217823 39.0 36.0 41.0 32.0 41.0 58-59 37.20051079006383 39.0 35.0 41.0 32.0 41.0 60-61 36.98501934584837 39.0 35.0 40.0 31.5 41.0 62-63 36.680078003668974 38.0 35.0 40.0 31.0 41.0 64-65 36.3401808250415 37.5 35.0 40.0 31.0 41.0 66-67 36.03611023567625 37.0 35.0 40.0 31.0 41.0 68-69 35.73944981818126 36.5 34.0 39.0 30.0 41.0 70-71 35.42593341915459 36.0 34.0 39.0 30.0 40.5 72-73 35.095721972477875 35.5 34.0 39.0 30.0 40.0 74-75 34.760711263996164 35.0 34.0 37.5 29.5 40.0 76-77 33.62544454804002 34.5 32.5 36.0 28.5 39.0 78-79 34.286866118675185 35.0 33.5 37.0 29.5 39.0 80-81 34.18015845693189 35.0 34.0 36.0 30.0 39.0 82-83 33.97096294019443 35.0 34.0 36.0 30.0 37.0 84-85 33.78977948537179 35.0 34.0 35.5 29.5 37.0 86-87 33.59072600640019 35.0 33.0 35.0 29.0 37.0 88-89 33.44556314165034 35.0 33.0 35.0 29.0 36.0 90-91 33.29140570596829 35.0 33.0 35.0 29.0 36.0 92-93 33.18706622812768 35.0 33.0 35.0 29.0 36.0 94-95 33.175194749094146 35.0 33.0 35.0 29.0 35.0 96-97 33.219358311694094 35.0 33.0 35.0 29.0 35.0 98-99 33.30312877736796 35.0 33.0 35.0 29.5 35.0 100 32.04381728450131 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 11.0 20 45.0 21 305.0 22 1425.0 23 4872.0 24 13103.0 25 28323.0 26 52194.0 27 83044.0 28 119335.0 29 159547.0 30 205132.0 31 255397.0 32 320298.0 33 411822.0 34 568909.0 35 831988.0 36 1398713.0 37 2478415.0 38 2786198.0 39 1230446.0 40 45987.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.41306678817081 19.70350624936906 13.952549722568575 23.930877239891558 2 15.513850653584962 20.803664404834336 40.11369186149619 23.568793080084507 3 18.80341157436081 25.14155323400188 29.917047958666764 26.13798723297055 4 13.182353524302194 17.3278729226748 37.31888743678101 32.170886116241995 5 13.980934035801887 37.174764972247765 34.88799519076423 13.956305801186119 6 31.594705475234893 36.4986344426043 17.966697315540618 13.939962766620193 7 27.842537544870588 31.93158843928112 22.111734698981675 18.114139316866613 8 25.592155343408358 35.849896912467 20.256477416690995 18.301470327433652 9 25.96448004685549 16.46032789747815 20.769377682344885 36.805814373321475 10-11 25.204674453481466 26.300380791795924 27.709187659326396 20.785757095396214 12-13 25.674584444013966 23.810077931810348 28.048253332496625 22.467084291679058 14-15 22.707327809260324 25.048633487669058 25.83667788033479 26.407360822735825 16-17 22.45712568130082 28.270457668630193 26.42655956840565 22.845857081663333 18-19 22.5346956898021 27.36119313993105 28.078102794808547 22.026008375458304 20-21 23.35785844707163 26.485767691205663 28.089805990364457 22.06656787135825 22-23 23.135771110357584 26.381784653468948 27.926222896677384 22.556221339496084 24-25 22.85423528134305 26.514623799417063 28.122004641138748 22.50913627810113 26-27 22.71024593547722 26.607018194486283 28.103523407196178 22.57921246284032 28-29 22.80899593201455 26.674139917079344 27.98925804493449 22.52760610597162 30-31 23.08835059403717 26.383695625865727 27.92631296296946 22.60164081712764 32-33 22.876966835760644 26.54981842274462 27.826400991793914 22.74681374970082 34-35 23.00167769594288 26.650580567182132 27.83425749770284 22.513484239172143 36-37 23.098262321649717 26.507077492622606 27.68637723220937 22.70828295351831 38-39 22.789159052831405 26.820438136107853 27.773153176346344 22.617249634714394 40-41 23.066981175588737 26.608075975367434 27.641690680923254 22.68325216812058 42-43 22.888079824570607 26.74675703938418 27.4329554979651 22.932207638080115 44-45 22.854220999795807 26.821620394228763 27.35021271976396 22.97394588621147 46-47 23.026067869464917 26.782152777406136 27.164195984201108 23.027583368927836 48-49 23.08736653318533 27.0212124708764 26.973901462005657 22.917519533932616 50-51 23.020653788175615 27.0524049217325 26.96564139228656 22.961299897805322 52-53 23.29686553805448 26.884668277955566 26.84975271572207 22.968713468267886 54-55 23.250430357855397 26.868428526678095 26.81340451416199 23.067736601304514 56-57 23.238031410527864 27.08833121597653 26.704035252456443 22.969602121039163 58-59 23.090403362882206 27.06053751072079 26.87989536046019 22.96916376593682 60-61 23.141419848935982 27.051387237772662 26.785646139570673 23.02154677372069 62-63 23.151619957730396 27.011665626604408 26.893973488720814 22.942740926944385 64-65 23.207341913372627 26.957915731682103 26.8073616262561 23.02738072868917 66-67 23.221922001168032 27.065488359155054 26.582995718971603 23.12959392070531 68-69 23.179057124098534 27.028111816812622 26.698167004847008 23.094664054241836 70-71 23.15302822619042 26.88250823180358 26.694290820306954 23.27017272169905 72-73 23.193618442293914 26.893952254832097 26.613952727218283 23.298476575655705 74-75 23.017829772852004 26.974955985137488 26.669902693451895 23.33731154855861 76-77 23.164563764223256 26.98654903760362 26.613485862097658 23.235401336075462 78-79 23.03959452354505 26.956517956806664 26.686724093215652 23.317163426432632 80-81 23.07084833076842 26.920025586038665 26.743483459510557 23.265642623682357 82-83 23.302136171082484 26.782840232338966 26.847689913105548 23.067333683473 84-85 23.231603595287968 26.817412254869353 26.77591845790193 23.17506569194075 86-87 23.09232158299767 26.936752806307517 26.759191662949526 23.21173394774528 88-89 23.232819958673957 26.78197157156972 26.69914015914923 23.286068310607096 90-91 23.205125025695768 26.79248904381896 26.779666136629665 23.222719793855607 92-93 23.268427370001056 26.756435905894264 26.873596396636383 23.101540327468296 94-95 22.92327433458994 26.956488198240457 26.974336137696152 23.14590132947345 96-97 23.014958651162704 27.02170759218329 26.99384349938973 22.969490257264276 98-99 24.236892863633802 29.023775720576122 27.150181400013324 19.58915001577675 100 23.139475345096255 30.12728407509883 20.84372334382114 25.889517235983778 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2387.0 1 2033.5 2 2553.0 3 3633.5 4 4703.0 5 7380.5 6 9970.0 7 12516.0 8 14763.5 9 15087.5 10 13607.0 11 11800.0 12 12342.5 13 16243.5 14 25712.0 15 39147.0 16 50178.5 17 56734.5 18 58533.5 19 55874.5 20 50625.0 21 44808.0 22 41532.5 23 42518.5 24 48065.5 25 59062.0 26 74338.0 27 90750.0 28 108647.0 29 128831.0 30 147812.5 31 166217.0 32 186520.0 33 207752.5 34 228123.5 35 246843.0 36 269359.0 37 291447.0 38 308238.5 39 324946.5 40 344297.5 41 360992.5 42 371928.0 43 383218.0 44 396863.0 45 416459.5 46 435974.5 47 454783.0 48 469084.0 49 472857.5 50 473116.5 51 475099.5 52 459414.5 53 430494.0 54 413237.0 55 396639.0 56 375693.5 57 347843.0 58 314429.5 59 277980.0 60 238451.5 61 204498.0 62 170725.5 63 139647.0 64 114287.5 65 88506.5 66 69039.0 67 51575.5 68 34525.0 69 24665.5 70 18144.5 71 12265.0 72 8518.0 73 5925.0 74 4268.5 75 2936.5 76 1829.5 77 1042.5 78 704.0 79 502.5 80 324.5 81 196.0 82 132.5 83 96.0 84 67.0 85 39.0 86 24.5 87 16.0 88 10.5 89 7.5 90 5.0 91 4.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 4.72920310199345E-4 20-21 0.0 22-23 5.457381308323489E-4 24-25 0.006713838508439809 26-27 0.028384271528000236 28-29 0.02688135575628384 30-31 0.028138371707389004 32-33 0.04907330376671726 34-35 0.023342534769602272 36-37 0.018664690578127544 38-39 0.014581164354393125 40-41 0.007258797595474626 42-43 0.010225340772420283 44-45 0.004673599125064667 46-47 0.003352930136538608 48-49 0.007857497644779526 50-51 0.0020051912815437145 52-53 0.0018878153619764945 54-55 0.0010672332066834528 56-57 0.006347985052336264 58-59 0.004309653822479867 60-61 0.007392374730548689 62-63 0.0057019984750422414 64-65 0.0011458489239768786 66-67 0.004052589719961445 68-69 0.01068558076467318 70-71 0.014030938218772394 72-73 0.004507499767903302 74-75 0.0015013916622929318 76-77 0.0023667547978019517 78-79 0.002414009869385755 80-81 0.0032949630576333045 82-83 0.0029721655030879907 84-85 0.003762293137943408 86-87 1.7114324141648187E-5 88-89 1.793260130140937E-4 90-91 0.0037080451004060455 92-93 6.037931481194862E-4 94-95 0.002096129217104268 96-97 3.691008996114994E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 231.0 20-21 670.0 22-23 1549.0 24-25 3606.0 26-27 4163.0 28-29 8639.0 30-31 17358.0 32-33 23452.0 34-35 32670.0 36-37 47065.0 38-39 54795.0 40-41 59580.0 42-43 75840.0 44-45 85990.0 46-47 86044.0 48-49 77906.0 50-51 69643.0 52-53 67981.0 54-55 74122.0 56-57 79201.0 58-59 80762.0 60-61 80452.0 62-63 80623.0 64-65 88243.0 66-67 94083.0 68-69 97887.0 70-71 95809.0 72-73 92377.0 74-75 96168.0 76-77 96146.0 78-79 105983.0 80-81 106914.0 82-83 105232.0 84-85 110014.0 86-87 119671.0 88-89 129566.0 90-91 144295.0 92-93 152853.0 94-95 183657.0 96-97 439806.0 98-99 773332.0 100-101 6851132.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.68128352154145 #Duplication Level Percentage of deduplicated Percentage of total 1 89.45837809090979 74.85991900402674 2 7.229273672079292 12.099097996161646 3 1.7688922527282096 4.440695223588223 4 0.68131542661682 2.2805339752928835 5 0.31020017391691296 1.297897435098633 6 0.168897248828615 0.8480123139141401 7 0.09687933213476232 0.567489080182264 8 0.06350100890845013 0.4251076744297556 9 0.04594222020392952 0.3460053559044704 >10 0.1696753635480532 2.3132482967740446 >50 0.005454669052315398 0.3003881113424217 >100 0.0015282699735269594 0.19254608534286108 >500 6.227109932874448E-5 0.029059447941919475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.6378485399949615E-5 0.0 1.8189242699974807E-5 0.0 3 0.0 3.6378485399949615E-5 0.0 1.8189242699974807E-5 0.0 4 0.0 7.275697079989923E-5 0.0 2.728386404996221E-5 0.0 5 0.0 7.275697079989923E-5 0.0 2.728386404996221E-5 0.0 6 0.0 7.275697079989923E-5 0.0 3.6378485399949615E-5 0.0 7 0.0 7.275697079989923E-5 0.0 3.6378485399949615E-5 0.0 8 0.0 8.185159214988663E-5 0.0 3.6378485399949615E-5 0.0 9 0.0 1.7279780564976067E-4 0.0 6.366234944991183E-5 9.094621349987404E-6 10-11 0.0 1.7279780564976067E-4 0.0 7.275697079989923E-5 9.094621349987404E-6 12-13 0.0 1.8189242699974807E-4 0.0 7.275697079989923E-5 9.094621349987404E-6 14-15 0.0 2.4100746577466618E-4 0.0 7.275697079989923E-5 1.8189242699974807E-5 16-17 0.0 2.546493977996473E-4 0.0 7.730428147489293E-5 3.6378485399949615E-5 18-19 0.0 2.910278831995969E-4 0.0 9.094621349987404E-5 5.9115038774918124E-5 20-21 9.094621349987404E-6 3.5469023264950877E-4 0.0 1.5460856294978586E-4 6.366234944991183E-5 22-23 9.094621349987404E-6 4.0925796074943314E-4 0.0 3.4104830062452765E-4 7.275697079989923E-5 24-25 9.094621349987404E-6 4.4108913547438906E-4 0.0 9.91313727148627E-4 8.185159214988663E-5 26-27 9.094621349987404E-6 4.547310674993702E-4 0.0 0.002596514395421404 9.094621349987404E-5 28-29 9.094621349987404E-6 4.592783781743639E-4 0.0 0.00966758249503661 1.0004083484986144E-4 30-31 9.094621349987404E-6 5.411299703242505E-4 0.0 0.010363321028310647 1.1368276687484255E-4 32-33 9.094621349987404E-6 5.456772809992442E-4 0.0 0.012013994803333362 1.1823007754983625E-4 34-35 9.094621349987404E-6 6.548127371990931E-4 0.0 0.0141512308205804 1.1823007754983625E-4 36-37 9.094621349987404E-6 7.730428147489294E-4 0.0 0.01808010724377496 1.1823007754983625E-4 38-39 9.094621349987404E-6 8.003266787988915E-4 0.0 0.02738390488481207 1.2277738822482996E-4 40-41 9.094621349987404E-6 8.821782709487782E-4 0.0 0.03737434643777324 1.2732469889982365E-4 42-43 9.094621349987404E-6 9.094621349987405E-4 0.0 0.04439084680928852 1.3187200957481734E-4 44-45 9.094621349987404E-6 0.0010140502805235955 0.0 0.05355822513007582 1.4551394159979846E-4 46-47 9.094621349987404E-6 0.0010913545619984884 0.0 0.06355776130438698 1.5006125227479215E-4 48-49 9.094621349987404E-6 0.0010913545619984884 0.0 0.07339814160507334 1.5460856294978586E-4 50-51 9.094621349987404E-6 0.001282341610348224 0.0 0.08351590785693433 1.5460856294978586E-4 52-53 9.094621349987404E-6 0.0013096254743981861 0.0 0.10438806385515542 1.6825049497476695E-4 54-55 9.094621349987404E-6 0.0013278147170981609 0.0 0.12918909627657107 1.8189242699974807E-4 56-57 9.094621349987404E-6 0.0013460039597981358 0.0 0.15645022377315831 1.8189242699974807E-4 58-59 9.094621349987404E-6 0.001359645891823117 0.0 0.18104662721419926 1.8189242699974807E-4 60-61 9.094621349987404E-6 0.0013914770665480727 0.0 0.1930106016001077 1.8189242699974807E-4 62-63 9.094621349987404E-6 0.001405118998573054 0.0 0.20643881002336406 1.8189242699974807E-4 64-65 9.094621349987404E-6 0.0016097479789477704 0.0 0.21307788360885488 1.8189242699974807E-4 66-67 9.094621349987404E-6 0.0016415791536727265 0.0 0.21861650801099722 1.8189242699974807E-4 68-69 9.094621349987404E-6 0.0016734103283976825 0.0 0.22430519366541435 1.8189242699974807E-4 70-71 9.094621349987404E-6 0.0017052415031226383 0.0 0.22875701081623318 1.8189242699974807E-4 72-73 9.094621349987404E-6 0.0017279780564976067 0.0 0.23266315068605276 1.9098704834973548E-4 74-75 9.094621349987404E-6 0.0017779984739225373 0.0 0.2357234907703235 1.9098704834973548E-4 76-77 9.094621349987404E-6 0.001878039308772399 0.0 0.23879747278661928 1.955343590247292E-4 78-79 9.094621349987404E-6 0.0019189651048473423 0.0 0.24091651956116633 2.0008166969972288E-4 80-81 9.094621349987404E-6 0.001923512415522336 0.0 0.24168501506524026 2.13723601724704E-4 82-83 9.094621349987404E-6 0.0019326070368723234 0.0 0.24226252352096445 2.273655337496851E-4 84-85 9.094621349987404E-6 0.0019598909009222857 0.0 0.24241258477323924 2.273655337496851E-4 86-87 9.094621349987404E-6 0.002028100561047191 0.0 0.24249443636538914 2.273655337496851E-4 88 9.094621349987404E-6 0.0021918037453469643 0.0 0.24251717291876412 2.273655337496851E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13280 0.0 51.501675 1 GTATCAA 24175 0.0 37.356537 1 TCAACGC 29040 0.0 30.509863 4 ATCAACG 29525 0.0 29.994215 3 CAACGCA 30045 0.0 29.460875 5 TATCAAC 30360 0.0 29.394411 2 AACGCAG 31035 0.0 28.534851 6 ACGCAGA 36015 0.0 24.612898 7 GTGGTAT 6545 0.0 23.36692 1 TGGTATC 6260 0.0 22.861176 2 GTACATG 35995 0.0 22.597109 1 CGCAGAG 39865 0.0 22.235886 8 TACATGG 36120 0.0 21.903894 2 ACATGGG 36695 0.0 21.001858 3 GCAGAGT 43570 0.0 20.2568 9 GAGTACT 23880 0.0 19.338352 12-13 CATGGGG 28685 0.0 19.047756 4 CAGAGTA 41915 0.0 18.472967 10-11 AGAGTAC 38820 0.0 17.898912 10-11 TATATAC 12240 0.0 17.695166 3 >>END_MODULE