##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140211_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8218688 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.330722129858195 33.0 31.0 34.0 31.0 34.0 2 32.62619410786734 34.0 31.0 34.0 31.0 34.0 3 32.29111483487389 33.0 31.0 34.0 30.0 34.0 4 36.16678525818233 37.0 35.0 37.0 35.0 37.0 5 36.04812069761013 37.0 35.0 37.0 35.0 37.0 6 36.14046828398888 37.0 36.0 37.0 35.0 37.0 7 36.12115400900971 37.0 36.0 37.0 35.0 37.0 8 36.12368726005903 37.0 36.0 37.0 35.0 37.0 9 37.941425322387225 39.0 38.0 39.0 35.0 39.0 10-11 37.86859727489351 39.0 38.0 39.0 35.0 39.0 12-13 37.83301799508632 39.0 38.0 39.0 35.0 39.0 14-15 39.21172521696894 41.0 39.0 41.0 36.0 41.0 16-17 39.197390203886556 40.0 39.0 41.0 36.0 41.0 18-19 39.16718994564583 40.0 39.0 41.0 36.0 41.0 20-21 39.157821967333504 40.0 39.0 41.0 36.0 41.0 22-23 39.09223773305746 40.0 39.0 41.0 36.0 41.0 24-25 39.034907951035976 40.0 39.0 41.0 35.0 41.0 26-27 38.87760241988315 40.0 38.0 41.0 35.0 41.0 28-29 38.75380418703879 40.0 38.0 41.0 35.0 41.0 30-31 38.619253073884934 40.0 38.0 41.0 34.5 41.0 32-33 38.45803019888875 40.0 38.0 41.0 34.0 41.0 34-35 38.554743851957255 40.0 38.0 41.0 34.0 41.0 36-37 38.54482014545644 40.0 38.0 41.0 34.0 41.0 38-39 38.4950540312692 40.0 38.0 41.0 34.0 41.0 40-41 38.43346937826695 40.0 38.0 41.0 34.0 41.0 42-43 38.405963370476286 40.0 38.0 41.0 34.0 41.0 44-45 38.45741975685422 40.0 38.0 41.0 34.0 41.0 46-47 38.4103661861109 40.0 38.0 41.0 34.0 41.0 48-49 38.32980339295642 40.0 38.0 41.0 34.0 41.0 50-51 38.23499573236391 40.0 38.0 41.0 33.0 41.0 52-53 38.04222193920572 40.0 37.0 41.0 33.0 41.0 54-55 37.941554079819795 40.0 37.0 41.0 33.0 41.0 56-57 37.801611175780565 40.0 37.0 41.0 33.0 41.0 58-59 37.61506298169613 39.0 36.0 41.0 33.0 41.0 60-61 37.422328037203684 39.0 36.0 41.0 32.0 41.0 62-63 37.14508986038837 39.0 35.0 40.5 32.0 41.0 64-65 36.83711173722902 38.0 35.0 40.0 31.0 41.0 66-67 36.5570254183052 38.0 35.0 40.0 31.0 41.0 68-69 36.268722036314486 37.0 35.0 40.0 31.0 41.0 70-71 35.96056723255266 37.0 35.0 39.0 31.0 41.0 72-73 35.62074931551458 36.0 34.0 39.0 30.5 40.5 74-75 35.276432788583406 36.0 34.0 39.0 30.0 40.0 76-77 34.09628429056514 35.0 32.5 37.0 28.5 39.0 78-79 34.70953467707987 35.0 34.0 37.0 30.0 39.0 80-81 34.56640605395735 35.0 34.0 37.0 30.0 39.0 82-83 34.33174630218453 35.0 34.0 36.0 30.0 38.5 84-85 34.122082397703494 35.0 34.0 36.0 30.0 37.0 86-87 33.89136138999366 35.0 34.0 35.5 30.0 37.0 88-89 33.72254285691906 35.0 34.0 35.0 30.0 36.5 90-91 33.548665262309456 35.0 33.5 35.0 30.0 36.0 92-93 33.430553675307344 35.0 33.0 35.0 29.0 36.0 94-95 33.40213718115366 35.0 33.0 35.0 30.0 36.0 96-97 33.419455863887535 35.0 33.0 35.0 30.0 35.5 98-99 33.48423312005803 35.0 33.0 35.0 30.0 35.0 100 32.303833822456006 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 27.0 21 181.0 22 814.0 23 2934.0 24 7751.0 25 17281.0 26 31673.0 27 51082.0 28 75089.0 29 102327.0 30 132956.0 31 168301.0 32 213455.0 33 273942.0 34 376052.0 35 544429.0 36 897056.0 37 1695234.0 38 2298994.0 39 1273540.0 40 55567.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.954567444341485 20.07597806365201 13.727787208858642 24.24166728314787 2 15.03214381662864 21.0599550682542 40.73041828574098 23.177482829376174 3 18.37714243441289 25.549442928116996 30.42523332191221 25.64818131555791 4 12.620092160695235 17.692495444528372 38.42629139833511 31.26112099644128 5 13.3182084537094 37.649074888838705 35.68575665605021 13.346960001401683 6 30.630558064742207 37.60490725526994 18.40674569955691 13.35778898043094 7 26.968805726656125 32.316058232165524 22.719356179477796 17.99577986170055 8 24.629709754160274 36.686646335765516 21.038370114548695 17.645273795525515 9 25.3191385291667 16.744144564193213 21.18570506630742 36.751011840332666 10-11 24.303149115771276 26.75389307879798 28.746437387573298 20.19652041785745 12-13 24.939886998995462 24.050925159830864 29.026816688989776 21.9823711521839 14-15 21.98074072163343 25.641544003130427 26.40278472671064 25.974930548525503 16-17 21.853037857137295 28.94429135161233 27.096180071563737 22.106490719686644 18-19 21.872716700311717 28.066616350168754 28.695041261677872 21.365625687841654 20-21 22.485683551660678 27.263864157047486 28.63769078077733 21.612761510514506 22-23 22.212091663968224 27.279950584779627 28.472052619032233 22.03590513221991 24-25 22.06317457388511 27.38455637969157 28.621857891837404 21.930411154585915 26-27 22.08026535782075 27.536725736492233 28.524449490729104 21.858559414957906 28-29 21.938034118375057 27.54491933820431 28.597037134985154 21.92000940843548 30-31 22.277957101938714 27.479573790532424 28.434141779360928 21.808327328167934 32-33 22.056100334088153 27.487881551198186 28.398374789683295 22.05764332503037 34-35 22.04604742291202 27.651896791123526 28.515153853962676 21.786901932001776 36-37 22.1698102715258 27.554022418636425 28.344635992504386 21.93153131733339 38-39 21.905571596380952 27.600762038838724 28.528346430019656 21.965319934760668 40-41 22.184515004410652 27.474949010176115 28.381372676260785 21.959163309152448 42-43 22.128960051279485 27.57177449440999 28.21684710973341 22.08241834457711 44-45 22.10366444675533 27.747522544914847 28.079715916862792 22.06909709146703 46-47 22.279745554131846 27.615395403331476 27.81922042315184 22.285638619384834 48-49 22.19686851279862 27.71156516289153 27.813921691108767 22.277644633201078 50-51 22.11709417001974 27.77681017963443 27.8833120230575 22.22278362728833 52-53 22.273471894986535 27.74391636039184 27.84758595887546 22.135025785746162 54-55 22.200974819102125 27.69559633047277 27.792255977623682 22.31117287280142 56-57 22.289655496839504 27.83292491324472 27.640006243225855 22.237413346689923 58-59 22.170262570827454 27.96663381208429 27.780476162705675 22.082627454382582 60-61 22.301890789873934 28.055166931218146 27.591184875458108 22.051757403449816 62-63 22.20590059970565 28.19583085300082 27.53351806856919 22.064750478724342 64-65 22.17239539360277 28.088816298390608 27.565528291832514 22.173260016174112 66-67 22.210378122215676 28.071293612523064 27.452787860197343 22.26554040506392 68-69 22.21554827846592 27.973767942743414 27.607686932174673 22.20299684661599 70-71 22.218472517683768 27.74606964975443 27.66515531631837 22.37030251624343 72-73 22.28991779362885 27.79694020008211 27.577769221932268 22.335372784356775 74-75 22.144622491668834 27.90891117266624 27.572942055095723 22.3735242805692 76-77 22.282239680697685 27.840975133740827 27.524576808045946 22.35220837751554 78-79 22.19338142410948 27.84914228640597 27.53668312297198 22.420793166512574 80-81 22.178536816234207 27.913841285999425 27.559261493632643 22.34836040413373 82-83 22.252357366208837 27.912997161154767 27.61722979409929 22.217415678537105 84-85 22.331380287080794 27.86608332237947 27.551287530761552 22.25124885977819 86-87 22.21028788407806 27.877498972219055 27.624941268223346 22.28727187547954 88-89 22.222929071359275 27.84237971092861 27.61080777767855 22.32388344003357 90-91 22.219576862365532 27.936368756835762 27.607763737502744 22.236290643295963 92-93 22.244427081681742 27.88076228789997 27.628339606329966 22.246471024088326 94-95 22.08699758022267 27.9770377191719 27.713977489511414 22.221987211094017 96-97 22.173958863927776 28.09498006428609 27.74110796901621 21.98995310276992 98-99 23.23434573630165 30.036113593667352 27.981315391091403 18.748225278939593 100 22.23141011194056 31.14952726745141 21.715212822363494 24.903849798244536 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2351.0 1 1889.5 2 2103.5 3 2953.5 4 3764.5 5 5839.5 6 7871.5 7 9527.5 8 10905.5 9 10829.5 10 9546.0 11 8523.0 12 9143.0 13 11928.5 14 18143.0 15 26589.5 16 33582.0 17 37944.0 18 39527.5 19 38479.5 20 36553.0 21 35268.5 22 35614.0 23 38808.5 24 45951.5 25 57104.0 26 71637.0 27 87734.5 28 104493.0 29 123024.0 30 140706.5 31 157834.5 32 175499.5 33 191722.5 34 208674.0 35 225826.0 36 244047.5 37 261802.0 38 276547.0 39 289449.5 40 303493.5 41 316625.0 42 325674.0 43 333656.5 44 342925.5 45 355125.0 46 363169.5 47 365001.0 48 363436.5 49 359728.0 50 354488.0 51 343729.0 52 327033.0 53 306971.5 54 287591.0 55 267539.0 56 245110.5 57 221858.5 58 197310.5 59 172252.0 60 146378.5 61 120794.5 62 97647.5 63 77118.0 64 59058.5 65 45006.5 66 34793.0 67 26675.5 68 20101.0 69 15058.0 70 11050.5 71 7782.5 72 5587.5 73 3983.0 74 2710.0 75 1790.0 76 1194.5 77 792.5 78 526.0 79 347.0 80 235.5 81 154.5 82 113.5 83 81.5 84 57.5 85 40.5 86 32.0 87 29.5 88 25.5 89 19.0 90 11.5 91 5.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.475326475466644E-4 20-21 0.0 22-23 6.875346619382941E-4 24-25 0.006389763136957453 26-27 0.029141066013919772 28-29 0.027809303110438572 30-31 0.029375274439752377 32-33 0.051125223076165634 34-35 0.02390434575599567 36-37 0.019897930596685254 38-39 0.01499866170098272 40-41 0.008017582678103662 42-43 0.010747521467651639 44-45 0.0047341536043478466 46-47 0.0036611995771637915 48-49 0.008624879658734633 50-51 0.002047435379141772 52-53 0.0019864278980333233 54-55 0.0010227717437235459 56-57 0.00698099449738573 58-59 0.004718802635770667 60-61 0.0077047891303333805 62-63 0.005926494910999476 64-65 0.0013323514564550338 66-67 0.0040644240603582025 68-69 0.011331280354882352 70-71 0.0150104313322679 72-73 0.005127802119377757 74-75 0.0014099449416500286 76-77 0.0024793234282719603 78-79 0.0028450582067467757 80-81 0.0035234766376812856 82-83 0.0033063529175972823 84-85 0.0041800425378929595 86-87 2.4140474386071525E-5 88-89 2.202102077707778E-4 90-91 0.003708517172586773 92-93 6.39253620930173E-4 94-95 0.0021236182138623973 96-97 4.2154635850691086E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 165.0 20-21 525.0 22-23 1205.0 24-25 2485.0 26-27 4512.0 28-29 10485.0 30-31 22582.0 32-33 29275.0 34-35 39759.0 36-37 59896.0 38-39 67686.0 40-41 66459.0 42-43 77344.0 44-45 84981.0 46-47 84728.0 48-49 78199.0 50-51 70566.0 52-53 68880.0 54-55 74174.0 56-57 76523.0 58-59 75675.0 60-61 75570.0 62-63 72984.0 64-65 77949.0 66-67 82598.0 68-69 82192.0 70-71 75780.0 72-73 70913.0 74-75 72298.0 76-77 72963.0 78-79 77544.0 80-81 76609.0 82-83 74510.0 84-85 76882.0 86-87 81805.0 88-89 88061.0 90-91 94935.0 92-93 101143.0 94-95 125433.0 96-97 296971.0 98-99 538018.0 100-101 4907426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.88499714314294 #Duplication Level Percentage of deduplicated Percentage of total 1 90.78885433945086 78.88189349912409 2 6.552493772424545 11.386268053951369 3 1.5271443475614186 3.980577968251222 4 0.548679344613632 1.9068801315702784 5 0.23643545945974553 1.0271347109848838 6 0.11398615378113272 0.594221198737894 7 0.06941077194263565 0.42215283053574704 8 0.04421057352513752 0.3072988443542627 9 0.031722729664873224 0.24806063486746852 >10 0.08553391286112967 1.115292041077003 >50 0.001211371580100809 0.06867037589244689 >100 2.7532899952043867E-4 0.038781712469151394 >500 4.189413516800665E-5 0.022767998184156132 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.650217650311096E-5 0.0 0.0 0.0 3 0.0 3.650217650311096E-5 0.0 0.0 0.0 4 0.0 8.517174517392556E-5 0.0 1.2167392167703653E-5 1.2167392167703653E-5 5 0.0 8.517174517392556E-5 0.0 1.2167392167703653E-5 1.2167392167703653E-5 6 2.4334784335407306E-5 8.517174517392556E-5 0.0 1.2167392167703653E-5 1.2167392167703653E-5 7 2.4334784335407306E-5 8.517174517392556E-5 0.0 1.2167392167703653E-5 1.2167392167703653E-5 8 2.4334784335407306E-5 8.517174517392556E-5 0.0 1.2167392167703653E-5 2.4334784335407306E-5 9 2.4334784335407306E-5 1.9467827468325845E-4 0.0 2.4334784335407306E-5 2.4334784335407306E-5 10-11 3.650217650311096E-5 1.9467827468325845E-4 0.0 3.0418480419259132E-5 2.4334784335407306E-5 12-13 4.866956867081461E-5 1.9467827468325845E-4 0.0 3.650217650311096E-5 2.4334784335407306E-5 14-15 5.475326475466644E-5 2.859337159410359E-4 0.0 3.650217650311096E-5 2.4334784335407306E-5 16-17 8.517174517392556E-5 2.9201741202488767E-4 0.0 6.0836960838518265E-5 2.4334784335407306E-5 18-19 9.733913734162922E-5 3.2243589244414683E-4 0.0 7.908804909007375E-5 2.4334784335407306E-5 20-21 9.733913734162922E-5 3.711054611149614E-4 0.0 1.0950652950933288E-4 2.4334784335407306E-5 22-23 1.2167392167703653E-4 4.015239415342206E-4 0.0 1.3992500992859202E-4 2.4334784335407306E-5 24-25 1.2775761776088836E-4 4.319424219534797E-4 0.0 1.885945785994066E-4 3.0418480419259132E-5 26-27 1.581760981801475E-4 4.380261180373315E-4 0.0 2.494315394379249E-4 3.650217650311096E-5 28-29 1.581760981801475E-4 4.380261180373315E-4 0.0 5.475326475466644E-4 3.650217650311096E-5 30-31 1.581760981801475E-4 4.988630788758498E-4 0.0 0.0015330914131306602 3.650217650311096E-5 32-33 1.581760981801475E-4 4.988630788758498E-4 0.0 0.0034190371991247265 3.650217650311096E-5 34-35 1.642597942639993E-4 5.962022162174789E-4 0.0 0.006101947172103382 3.650217650311096E-5 36-37 2.068456668509621E-4 6.935413535591082E-4 0.0 0.010196274636535661 3.650217650311096E-5 38-39 2.068456668509621E-4 7.057087457268119E-4 0.0 0.016231301151716674 3.650217650311096E-5 40-41 2.068456668509621E-4 8.030478830684411E-4 0.0 0.0221507374413045 3.650217650311096E-5 42-43 2.068456668509621E-4 8.334663634877002E-4 0.0 0.027857244367957515 3.650217650311096E-5 44-45 2.068456668509621E-4 9.79475069500144E-4 0.0 0.034032195893067115 3.650217650311096E-5 46-47 2.068456668509621E-4 0.001082897902925625 0.0 0.04083985181089731 3.650217650311096E-5 48-49 2.068456668509621E-4 0.001082897902925625 0.0 0.04760492185614054 3.650217650311096E-5 50-51 2.494315394379249E-4 0.0011741533441834025 0.0 0.05385896143034022 3.650217650311096E-5 52-53 2.555152355217767E-4 0.0011802370402672544 0.0 0.05990007164160509 3.650217650311096E-5 54-55 2.615989316056285E-4 0.0011802370402672544 0.0 0.06604460468629543 4.258587258696278E-5 56-57 2.6768262768948035E-4 0.001192404432434958 0.0 0.07236556491741747 4.866956867081461E-5 58-59 2.9201741202488767E-4 0.0012045718246026615 0.0 0.07881428276630041 4.866956867081461E-5 60-61 3.1026850027644315E-4 0.0012471576971896244 0.0 0.08516566147784171 6.0836960838518265E-5 62-63 3.2243589244414683E-4 0.0012775761776088836 0.0 0.0909269216692494 6.0836960838518265E-5 64-65 3.285195885279986E-4 0.0013262457462796982 0.0 0.09656650793898003 6.0836960838518265E-5 66-67 3.4068698069570226E-4 0.0013262457462796982 0.0 0.1027232083758381 6.0836960838518265E-5 68-69 3.4068698069570226E-4 0.001362747922782809 0.0 0.10820461854738858 6.0836960838518265E-5 70-71 3.467706767795541E-4 0.0013931664032020682 0.0 0.11360085697376515 6.0836960838518265E-5 72-73 3.5285437286340594E-4 0.0014114174914536238 0.0 0.11778035618337136 6.0836960838518265E-5 74-75 3.5285437286340594E-4 0.0014418359718728828 0.0 0.12126023034333461 6.0836960838518265E-5 76-77 3.589380689472578E-4 0.0014905055405436975 0.0 0.12452109144427917 6.0836960838518265E-5 78-79 3.650217650311096E-4 0.0015148403248791049 0.0 0.12657738072062108 6.0836960838518265E-5 80-81 3.711054611149614E-4 0.0015270077170468084 0.0 0.12717966663292243 6.0836960838518265E-5 82-83 3.8327285328266505E-4 0.001539175109214512 0.0 0.12771503188830138 6.0836960838518265E-5 84-85 3.893565493665169E-4 0.001545258805298364 0.0 0.12789754277081694 6.0836960838518265E-5 86-87 3.893565493665169E-4 0.0015695935896337713 0.0 0.127976630819907 6.0836960838518265E-5 88 3.893565493665169E-4 0.001581760981801475 0.0 0.12798879821207473 6.0836960838518265E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8540 0.0 44.08612 1 GTATCAA 15220 0.0 35.61235 1 TCAACGC 17780 0.0 29.476469 4 ATCAACG 17810 0.0 29.42682 3 CAACGCA 18320 0.0 28.63038 5 TATCAAC 18940 0.0 28.17747 2 AACGCAG 18825 0.0 27.884491 6 CTTATAC 5920 0.0 26.199512 1 ACGCAGA 22130 0.0 23.682407 7 CGCAGAG 22695 0.0 23.111197 8 GTACATG 21020 0.0 20.906431 1 TATACAC 8915 0.0 20.765081 3 TACATGG 20960 0.0 20.667894 2 GTGGTAT 5020 0.0 20.514704 1 ACATGGG 21065 0.0 19.911709 3 TGGTATC 4805 0.0 19.176567 2 GCAGAGT 27255 0.0 19.030325 9 TATGCCG 4575 0.0 18.161297 42-43 GAGTACT 15760 0.0 17.817879 12-13 CATGGGG 15770 0.0 17.766813 4 >>END_MODULE