##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140210_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7441695 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.36047768687107 33.0 31.0 34.0 31.0 34.0 2 32.65307487071158 34.0 31.0 34.0 31.0 34.0 3 32.3233127667823 33.0 31.0 34.0 30.0 34.0 4 36.18846633730622 37.0 35.0 37.0 35.0 37.0 5 36.073521959714824 37.0 35.0 37.0 35.0 37.0 6 36.16307077890185 37.0 36.0 37.0 35.0 37.0 7 36.140952968376155 37.0 36.0 37.0 35.0 37.0 8 36.14432975283185 37.0 36.0 37.0 35.0 37.0 9 37.963905803718106 39.0 38.0 39.0 35.0 39.0 10-11 37.8935828463811 39.0 38.0 39.0 35.0 39.0 12-13 37.86008301872087 39.0 38.0 39.0 35.0 39.0 14-15 39.25199836865123 41.0 39.0 41.0 36.0 41.0 16-17 39.24173121849256 41.0 39.0 41.0 36.0 41.0 18-19 39.21177466961492 41.0 39.0 41.0 36.0 41.0 20-21 39.201860860939625 40.0 39.0 41.0 36.0 41.0 22-23 39.13969452356736 40.0 39.0 41.0 36.0 41.0 24-25 39.087370746203874 40.0 39.0 41.0 36.0 41.0 26-27 38.93612861637483 40.0 38.0 41.0 35.0 41.0 28-29 38.81933455301694 40.0 38.0 41.0 35.0 41.0 30-31 38.68984946549304 40.0 38.0 41.0 35.0 41.0 32-33 38.53814731954202 40.0 38.0 41.0 34.0 41.0 34-35 38.62512106504256 40.0 38.0 41.0 35.0 41.0 36-37 38.619085498087045 40.0 38.0 41.0 35.0 41.0 38-39 38.57271279878772 40.0 38.0 41.0 34.0 41.0 40-41 38.51084285054384 40.0 38.0 41.0 34.0 41.0 42-43 38.48317383613972 40.0 38.0 41.0 34.0 41.0 44-45 38.533463862727956 40.0 38.0 41.0 34.0 41.0 46-47 38.49076730012706 40.0 38.0 41.0 34.0 41.0 48-49 38.41228635984886 40.0 38.0 41.0 34.0 41.0 50-51 38.319463027801845 40.0 38.0 41.0 34.0 41.0 52-53 38.12789346582305 40.0 37.0 41.0 33.0 41.0 54-55 38.02201501967264 40.0 37.0 41.0 33.0 41.0 56-57 37.88390880326577 40.0 37.0 41.0 33.0 41.0 58-59 37.70064757692052 39.0 36.0 41.0 33.0 41.0 60-61 37.506002898217346 39.0 36.0 41.0 33.0 41.0 62-63 37.22341412829054 39.0 35.0 41.0 32.0 41.0 64-65 36.914003574949106 38.5 35.0 40.0 32.0 41.0 66-67 36.62830926518341 38.0 35.0 40.0 31.0 41.0 68-69 36.33984007220252 37.0 35.0 40.0 31.0 41.0 70-71 36.034946830991316 37.0 35.0 39.0 31.0 41.0 72-73 35.69390451910739 36.0 34.5 39.0 31.0 41.0 74-75 35.34749927059095 36.0 34.0 39.0 31.0 40.0 76-77 34.16733762255328 35.0 32.5 37.0 29.5 39.0 78-79 34.765209648950886 35.0 34.0 37.0 30.5 39.0 80-81 34.62408218785373 35.0 34.0 37.0 31.0 39.0 82-83 34.39267500328622 35.0 34.0 36.0 30.0 38.5 84-85 34.18539955852122 35.0 34.0 36.0 30.0 37.0 86-87 33.963596381644756 35.0 34.0 35.5 30.0 37.0 88-89 33.79878296936805 35.0 34.0 35.0 30.0 36.5 90-91 33.63300231964118 35.0 34.0 35.0 30.0 36.0 92-93 33.52007423560529 35.0 34.0 35.0 30.0 36.0 94-95 33.4927616697652 35.0 33.5 35.0 30.0 36.0 96-97 33.503874066372916 35.0 33.0 35.0 30.0 35.5 98-99 33.56125885693595 35.0 33.0 35.0 30.0 35.0 100 32.46081021159659 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 3.0 20 28.0 21 167.0 22 698.0 23 2503.0 24 6749.0 25 14792.0 26 27226.0 27 43450.0 28 64028.0 29 87592.0 30 113057.0 31 143370.0 32 182226.0 33 235008.0 34 324646.0 35 472648.0 36 787224.0 37 1514877.0 38 2103608.0 39 1258906.0 40 58885.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.10933127466256 19.983767139072484 13.55407605390976 24.352825532355197 2 15.17011917311849 21.06886939064286 40.40090328883406 23.36010814740459 3 18.38571723243159 25.52994982997825 30.408784557819153 25.67554837977101 4 12.708878823977601 17.53963310777988 38.33997496538087 31.411513102861647 5 13.322650283302393 37.63313331169847 35.69731089489693 13.3469055101022 6 30.773472978938265 37.473801331551485 18.352727436424093 13.39999825308616 7 27.007341741364034 32.26647961250764 22.851648717126945 17.87452992900139 8 24.81574426256384 36.41759034736038 21.0775636464542 17.68910174362158 9 25.45417408265187 16.619654527631138 21.164129946201772 36.76204144351522 10-11 24.430052561949932 26.60008237370653 28.778960975960448 20.190904088383093 12-13 24.989159055833383 23.97272395603421 28.991815708652396 22.04630127948001 14-15 22.078128705892944 25.541163673061046 26.324002797749706 26.056704823296307 16-17 22.001741538722026 28.703736178384094 27.0666696229824 22.227852659911484 18-19 22.01360450061176 27.966749331969837 28.546459087393867 21.473187080024537 20-21 22.65079311966224 27.170148722619032 28.454443678015416 21.724614479703316 22-23 22.372263031228716 27.160829894255713 28.33862228361026 22.12828479090531 24-25 22.193977289568586 27.227837266440762 28.47576502106944 22.10242042292121 26-27 22.19713706899543 27.416670679274958 28.364968826741134 22.021223424988477 28-29 22.135611547275378 27.431182898534946 28.375995217182933 22.05721033700675 30-31 22.38940231225956 27.34504860195622 28.25881932479863 22.006729760985593 32-33 22.190195332597575 27.445098508795084 28.21248744629763 22.15221871230971 34-35 22.236770029783067 27.511601970898013 28.31404756077658 21.937580438542337 36-37 22.308678032853145 27.418498349876725 28.18798613446582 22.084837482804307 38-39 22.09344442418783 27.52909623383572 28.292816542750685 22.084642799225758 40-41 22.339252816652643 27.37163646228665 28.168051390467326 22.121059330593386 42-43 22.26289596097984 27.478436265426488 28.02814703667901 22.23052073691467 44-45 22.26020349460259 27.62275461109792 27.8807246456992 22.236317248600283 46-47 22.408452008322524 27.563381926515657 27.613327732759913 22.414838332401903 48-49 22.35976590991121 27.58513216482613 27.644617321993238 22.410484603269417 50-51 22.29281787088947 27.697080194623236 27.659361884892768 22.35074004959453 52-53 22.458264480160906 27.657184012702835 27.583263326197123 22.30128818093914 54-55 22.412540256763087 27.57233465791616 27.538827008068544 22.47629807725221 56-57 22.453588035592393 27.751258974207378 27.42610909686905 22.369043893331177 58-59 22.327424535903386 27.817116392317548 27.571763208429896 22.283695863349166 60-61 22.4389309086588 27.882051750467273 27.42293219631161 22.25608514456231 62-63 22.380567347479126 28.018264064866443 27.369163332538175 22.232005255116253 64-65 22.36811031226441 27.880433981778435 27.417491410727518 22.333964295229634 66-67 22.39211419953566 27.885427908361876 27.298208723438556 22.424249168663913 68-69 22.384227372174053 27.84965078377608 27.39868057171087 22.367441272338993 70-71 22.3921263409597 27.567436186474993 27.485783597641188 22.554653874924117 72-73 22.421492227227972 27.647471361587794 27.42744088616977 22.503595525014465 74-75 22.31432432070762 27.786615235317562 27.378664606431435 22.520395837543383 76-77 22.41917750944065 27.707656396555947 27.351210049891 22.521956044112397 78-79 22.338124598110994 27.725748035370835 27.335855490152056 22.60027187636612 80-81 22.314914483387582 27.755832780409673 27.373405394834975 22.55584734136777 82-83 22.418222942114177 27.728485131800323 27.434997723218963 22.418294202866534 84-85 22.497254603608614 27.69488930848673 27.37266896199339 22.435187125911263 86-87 22.367992806994234 27.765069935099618 27.402913946480624 22.464023311425528 88-89 22.395254876800237 27.720419422075654 27.404019739866882 22.480305961257226 90-91 22.401988180337998 27.808865867840172 27.41659526378641 22.37255068803542 92-93 22.44280340129784 27.706544257861808 27.460470825993067 22.39018151484729 94-95 22.28501673551638 27.790248194695693 27.49878201980155 22.425953049986376 96-97 22.329744851913198 27.91672360483957 27.579429376893668 22.174102166353567 98-99 23.425114966560905 29.858096132509456 27.77636347291811 18.940425428011537 100 29.94722729993493 41.359901622527026 28.692871077538047 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1900.0 1 1590.5 2 1874.5 3 2676.0 4 3456.0 5 5229.0 6 6966.5 7 8394.5 8 9491.5 9 9498.5 10 8607.0 11 7708.0 12 8147.0 13 10600.5 14 16041.5 15 23346.0 16 29500.0 17 33317.5 18 34759.5 19 34156.5 20 32633.0 21 31459.0 22 31870.0 23 35216.5 24 41946.5 25 52100.0 26 65833.0 27 81323.0 28 97114.0 29 114120.0 30 130684.5 31 145488.5 32 160704.5 33 176817.0 34 191847.0 35 206934.0 36 223726.0 37 238094.0 38 250593.5 39 262426.5 40 274909.5 41 288099.0 42 296095.5 43 303202.0 44 313619.5 45 323609.5 46 329091.5 47 332281.0 48 331715.0 49 327990.0 50 323873.5 51 315460.5 52 302481.0 53 286257.0 54 269414.5 55 252064.0 56 232325.0 57 211061.0 58 189077.0 59 164099.5 60 139123.0 61 115502.0 62 93058.0 63 73154.0 64 56021.0 65 43070.0 66 33200.0 67 25603.5 68 19579.5 69 14781.0 70 11126.0 71 8117.0 72 5786.5 73 4068.0 74 2809.5 75 1943.0 76 1319.5 77 862.5 78 575.0 79 386.5 80 255.0 81 154.5 82 111.5 83 90.0 84 62.5 85 39.5 86 28.5 87 18.5 88 10.0 89 7.0 90 5.5 91 4.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 5.37511951242291E-4 20-21 0.0 22-23 6.249265879250206E-4 24-25 0.0065191874135325555 26-27 0.02865391542778709 28-29 0.027808575268386728 30-31 0.028482105990511587 32-33 0.04955075939616252 34-35 0.023673272698507865 36-37 0.01906451667588107 38-39 0.014931561721351816 40-41 0.007638103455430657 42-43 0.010328907863891854 44-45 0.004586460867071494 46-47 0.00377261281804242 48-49 0.007417787343986918 50-51 0.0019525604440874 52-53 0.0020175346842874623 54-55 0.001105875630066998 56-57 0.006474881340761516 58-59 0.004341119639409977 60-61 0.007194639526368471 62-63 0.005866850373895556 64-65 0.0011549137598018328 66-67 0.004483373096390828 68-69 0.011107815066640356 70-71 0.014781317969144515 72-73 0.004805244044866915 74-75 0.0014736720859404907 76-77 0.0024170499733653095 78-79 0.0025949346874900195 80-81 0.003613730381774349 82-83 0.0031799099524322883 84-85 0.004186379416077664 86-87 4.57244360165164E-5 88-89 2.8758464613405063E-4 90-91 0.003731373872072108 92-93 7.665183262075874E-4 94-95 0.0021763114838491827 96-97 5.606188671674661E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 179.0 20-21 458.0 22-23 1023.0 24-25 2215.0 26-27 4511.0 28-29 10841.0 30-31 23273.0 32-33 29673.0 34-35 40602.0 36-37 61622.0 38-39 69529.0 40-41 68034.0 42-43 77141.0 44-45 86180.0 46-47 84679.0 48-49 77676.0 50-51 70997.0 52-53 68690.0 54-55 73855.0 56-57 75802.0 58-59 74735.0 60-61 72997.0 62-63 71146.0 64-65 75330.0 66-67 78826.0 68-69 77922.0 70-71 73679.0 72-73 69226.0 74-75 69885.0 76-77 71110.0 78-79 74604.0 80-81 73989.0 82-83 71614.0 84-85 72975.0 86-87 76965.0 88-89 81539.0 90-91 87230.0 92-93 91842.0 94-95 111392.0 96-97 261849.0 98-99 1553171.0 100-101 3222689.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.8346318974101 #Duplication Level Percentage of deduplicated Percentage of total 1 91.2797882733559 80.17526602663747 2 6.314345821751581 11.092364818529992 3 1.4243294360321235 3.753163551435819 4 0.47447476309509934 1.6670126464427566 5 0.21305389717267403 0.9356755316235245 6 0.10478367878074905 0.5522181512738134 7 0.060339022676647515 0.37098990920969704 8 0.03543480651196963 0.24899225490678428 9 0.021607050179503443 0.17080625690149984 >10 0.07084431734978217 0.9252165359878242 >50 7.679530952525822E-4 0.043943104966257605 >100 2.0900999994001758E-4 0.04408908119736835 >500 0.0 0.0 >1k 2.196999872911868E-5 0.020262130887166423 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.375119512422909E-5 0.0 0.0 0.0 3 0.0 5.375119512422909E-5 0.0 0.0 0.0 4 0.0 8.062679268634363E-5 0.0 0.0 0.0 5 1.3437798781057273E-5 8.062679268634363E-5 0.0 0.0 0.0 6 1.3437798781057273E-5 8.062679268634363E-5 0.0 0.0 0.0 7 1.3437798781057273E-5 8.062679268634363E-5 0.0 0.0 0.0 8 1.3437798781057273E-5 1.2094018902951545E-4 0.0 0.0 0.0 9 1.3437798781057273E-5 2.687559756211455E-4 0.0 0.0 0.0 10-11 2.6875597562114546E-5 2.687559756211455E-4 0.0 3.3594496952643184E-5 0.0 12-13 2.6875597562114546E-5 2.687559756211455E-4 0.0 4.0313396343171816E-5 0.0 14-15 2.6875597562114546E-5 3.359449695264318E-4 0.0 6.047009451475773E-5 1.3437798781057273E-5 16-17 3.3594496952643184E-5 3.4266386891696046E-4 0.0 6.718899390528637E-5 1.3437798781057273E-5 18-19 4.0313396343171816E-5 3.8969616465066087E-4 0.0 8.734569207687228E-5 1.3437798781057273E-5 20-21 4.0313396343171816E-5 4.232906616033041E-4 0.0 1.276590884200441E-4 1.3437798781057273E-5 22-23 4.0313396343171816E-5 4.501662591654186E-4 0.0 1.8812918293480182E-4 2.6875597562114546E-5 24-25 4.7032295733700454E-5 4.636040579464759E-4 0.0 2.21723679887445E-4 4.0313396343171816E-5 26-27 5.375119512422909E-5 4.7032295733700455E-4 0.0 2.687559756211455E-4 4.0313396343171816E-5 28-29 5.375119512422909E-5 4.7032295733700455E-4 0.0 6.853277378339209E-4 4.0313396343171816E-5 30-31 5.375119512422909E-5 5.576686494138767E-4 0.0 0.0022306745976555073 4.0313396343171816E-5 32-33 5.375119512422909E-5 5.643875488044054E-4 0.0 0.004468068094701543 4.0313396343171816E-5 34-35 6.047009451475773E-5 6.382954421002205E-4 0.0 0.007518448418001544 5.375119512422909E-5 36-37 6.718899390528637E-5 7.122033353960355E-4 0.0 0.012188083494418946 5.375119512422909E-5 38-39 6.718899390528637E-5 7.122033353960355E-4 0.0 0.01896745297946234 5.375119512422909E-5 40-41 6.718899390528637E-5 7.659545305202646E-4 0.0 0.026291053315138556 5.375119512422909E-5 42-43 6.718899390528637E-5 8.062679268634363E-4 0.0 0.03279494792517027 5.375119512422909E-5 44-45 6.718899390528637E-5 9.540837134550664E-4 0.0 0.039930419077911686 5.375119512422909E-5 46-47 6.718899390528637E-5 0.0010615861037035245 0.0 0.04881952297158107 6.047009451475773E-5 48-49 6.718899390528637E-5 0.0010615861037035245 0.0 0.056848607743262794 9.406459146740091E-5 50-51 6.718899390528637E-5 0.0012429963872477977 0.0 0.06396392219783262 1.0750239024845818E-4 52-53 7.3907893295815E-5 0.0012631530854193835 0.0 0.07119345794204143 1.276590884200441E-4 54-55 8.062679268634363E-5 0.0012631530854193835 0.0 0.07834236689356389 1.3437798781057274E-4 56-57 8.062679268634363E-5 0.0012631530854193835 0.0 0.08539049235422844 1.3437798781057274E-4 58-59 8.062679268634363E-5 0.0012631530854193835 0.0 0.0927476871868573 1.3437798781057274E-4 60-61 8.062679268634363E-5 0.0013034664817625553 0.0 0.09937252198591853 1.3437798781057274E-4 62-63 8.062679268634363E-5 0.0013437798781057273 0.0 0.10623923716303879 1.3437798781057274E-4 64-65 8.062679268634363E-5 0.0013975310732299564 0.0 0.11301188774869167 1.3437798781057274E-4 66-67 8.062679268634363E-5 0.0014109688720110136 0.0 0.11967031704470554 1.3437798781057274E-4 68-69 8.062679268634363E-5 0.0014378444695731282 0.0 0.12596592577363086 1.3437798781057274E-4 70-71 8.062679268634363E-5 0.0014445633689636568 0.0 0.13179121154521922 1.3437798781057274E-4 72-73 8.062679268634363E-5 0.0014512822683541854 0.0 0.13641381432590288 1.4781578659163E-4 74-75 8.062679268634363E-5 0.0014781578659163 0.0 0.1403107759724095 1.4781578659163E-4 76-77 8.062679268634363E-5 0.001552065759212115 0.0 0.14406664073171502 1.4781578659163E-4 78-79 8.062679268634363E-5 0.0015856602561647583 0.0 0.14659294690255378 1.4781578659163E-4 80-81 8.062679268634363E-5 0.0015856602561647583 0.0 0.14750671721966568 1.4781578659163E-4 82-83 8.062679268634363E-5 0.0015856602561647583 0.0 0.1479770401770027 1.6125358537268726E-4 84-85 8.062679268634363E-5 0.001605816954336344 0.0 0.1481920449574996 1.6125358537268726E-4 86-87 8.062679268634363E-5 0.00162597365250793 0.0 0.14827939064957646 1.6125358537268726E-4 88 8.062679268634363E-5 0.0016662870488511018 0.0 0.148286109548967 1.6125358537268726E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7425 0.0 44.93796 1 GTATCAA 12795 0.0 34.18078 1 TCAACGC 14795 0.0 28.725946 4 ATCAACG 14975 0.0 28.435606 3 CAACGCA 15225 0.0 27.914639 5 AACGCAG 15765 0.0 27.062866 6 TATCAAC 16175 0.0 26.707546 2 ACGCAGA 18595 0.0 22.94413 7 CGCAGAG 19145 0.0 22.242006 8 GTACATG 18955 0.0 21.553333 1 TACATGG 18845 0.0 21.133345 2 CTTATAC 5175 0.0 19.955029 1 ACATGGG 19485 0.0 19.82687 3 GCAGAGT 22690 0.0 18.531279 9 CATGGGG 14780 0.0 18.316414 4 GAGTACT 13185 0.0 18.176394 12-13 TATGCCG 3315 0.0 17.221313 42-43 TATACAC 7765 0.0 16.954988 3 AGAGTAC 20080 0.0 16.831888 10-11 CAGAGTA 22310 0.0 16.680077 10-11 >>END_MODULE