##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140206_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7283695 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.191147075763055 33.0 31.0 34.0 31.0 34.0 2 32.47848777303278 34.0 31.0 34.0 31.0 34.0 3 32.272532279289564 33.0 31.0 34.0 30.0 34.0 4 36.08722042864233 37.0 35.0 37.0 35.0 37.0 5 35.92873232610646 37.0 35.0 37.0 35.0 37.0 6 36.02671844441592 37.0 35.0 37.0 35.0 37.0 7 35.99511470483045 37.0 35.0 37.0 35.0 37.0 8 35.97269504008611 37.0 35.0 37.0 35.0 37.0 9 37.76424671818356 39.0 38.0 39.0 35.0 39.0 10-11 37.69002731443313 39.0 37.0 39.0 35.0 39.0 12-13 37.66172148888717 39.0 37.0 39.0 35.0 39.0 14-15 38.996789472925485 40.0 38.0 41.0 35.5 41.0 16-17 38.977223785455045 40.0 38.0 41.0 35.5 41.0 18-19 38.94588186353218 40.0 38.0 41.0 35.0 41.0 20-21 38.93584882421743 40.0 38.0 41.0 35.0 41.0 22-23 38.85039799285987 40.0 38.0 41.0 35.0 41.0 24-25 38.78626891207007 40.0 38.0 41.0 35.0 41.0 26-27 38.641863537363236 40.0 38.0 41.0 34.0 41.0 28-29 38.51991974810201 40.0 38.0 41.0 34.0 41.0 30-31 38.376891741269965 40.0 38.0 41.0 34.0 41.0 32-33 38.220881005995025 40.0 38.0 41.0 34.0 41.0 34-35 38.32144806642884 40.0 38.0 41.0 34.0 41.0 36-37 38.318291450263274 40.0 38.0 41.0 34.0 41.0 38-39 38.25359157784973 40.0 38.0 41.0 34.0 41.0 40-41 38.23325127814927 40.0 38.0 41.0 33.0 41.0 42-43 38.30522976907395 40.0 38.0 41.0 34.0 41.0 44-45 38.26334363745313 40.0 38.0 41.0 33.0 41.0 46-47 38.179451134530396 40.0 38.0 41.0 33.0 41.0 48-49 38.08449125439542 40.0 37.0 41.0 33.0 41.0 50-51 37.97568897486545 40.0 37.0 41.0 33.0 41.0 52-53 37.826972732262064 40.0 37.0 41.0 33.0 41.0 54-55 37.66397570189967 40.0 36.5 41.0 33.0 41.0 56-57 37.55692989068015 39.0 36.0 41.0 32.0 41.0 58-59 37.35112234346664 39.0 36.0 41.0 32.0 41.0 60-61 37.146022953834056 39.0 35.0 41.0 32.0 41.0 62-63 36.88377060365441 38.5 35.0 40.0 31.0 41.0 64-65 36.57365054787018 38.0 35.0 40.0 31.0 41.0 66-67 36.2833854080572 37.5 35.0 40.0 31.0 41.0 68-69 35.99686980513607 37.0 34.5 39.5 30.5 41.0 70-71 35.6817206710101 36.5 34.0 39.0 30.0 41.0 72-73 35.21746779577221 36.0 34.0 39.0 30.0 40.5 74-75 34.975420377436656 35.5 34.0 38.5 30.0 40.0 76-77 33.75176870412895 34.5 32.5 36.5 28.5 39.0 78-79 34.45569915516316 35.0 34.0 37.0 29.5 39.0 80-81 34.3658597753663 35.0 34.0 36.5 30.0 39.0 82-83 34.127158055863575 35.0 34.0 36.0 30.0 38.0 84-85 33.90740209468875 35.0 34.0 36.0 30.0 37.0 86-87 33.71752836735722 35.0 33.5 35.5 29.5 37.0 88-89 33.53860107857148 35.0 33.0 35.0 29.0 36.0 90-91 33.38479561791394 35.0 33.0 35.0 29.0 36.0 92-93 33.301859002290364 35.0 33.0 35.0 29.0 36.0 94-95 33.2589130443677 35.0 33.0 35.0 29.0 36.0 96-97 33.308843647485915 35.0 33.0 35.0 29.0 35.0 98-99 33.39994118276605 35.0 33.0 35.0 30.0 35.0 100 32.209078324334854 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 48.0 21 218.0 22 1020.0 23 3330.0 24 8817.0 25 18691.0 26 34232.0 27 54449.0 28 78522.0 29 105518.0 30 134606.0 31 168829.0 32 211136.0 33 269411.0 34 364912.0 35 512576.0 36 816418.0 37 1460779.0 38 1901864.0 39 1089469.0 40 48840.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.22594438674327 19.8179907313527 13.52895748655044 24.427107395353595 2 15.350313268196981 20.89317303923352 40.22860649711444 23.527907195455054 3 18.688577706782066 25.21257411245254 30.109470536588915 25.989377644176482 4 12.89105323602924 17.254346866528596 38.09908295171613 31.755516945726036 5 13.502254007066469 37.57104052270173 35.453928260312935 13.472777209918869 6 31.299141438514383 37.10948907113766 18.156224279023213 13.435145211324748 7 27.53546105376461 32.08324895537224 22.46803305190566 17.913256938957495 8 25.103687070916614 36.409981472315906 20.731332105476685 17.75499935129079 9 25.65961369881633 16.547260696665635 20.920439419827435 36.8726861846906 10-11 24.74413741926316 26.484133396579622 28.466080746104826 20.30564843805239 12-13 25.1723198184438 23.803509070602217 28.756283726872145 22.267887384081845 14-15 22.271182414969324 25.40873141997297 26.141765958074853 26.178320206982857 16-17 22.14619090997083 28.626768419051047 26.878878096899996 22.348162574078128 18-19 22.213121224872815 27.8676070318705 28.314900610198535 21.60437113305815 20-21 22.916331985271 27.095105536886628 28.19760440892451 21.790958068917867 22-23 22.614008700193747 27.029866124617 28.028220874986086 22.327904300203166 24-25 22.390732988988596 27.097227145433028 28.194480934573356 22.31755893100502 26-27 22.392406919950247 27.275181138075766 28.0843315263895 22.248080415584486 28-29 22.29890718598587 27.380540132282764 28.111472983107884 22.209079698623484 30-31 22.590684701460543 27.23130918600797 27.98344380963453 22.194562302896962 32-33 22.390466860974826 27.31271539839791 27.97301324166021 22.323804498967053 34-35 22.444655899466888 27.409291560437556 27.993661155472843 22.15239138462272 36-37 22.50235486314883 27.28188173766068 27.942170654323238 22.273592744867248 38-39 22.251537252542406 27.485948935380566 28.044870623363988 22.217643188713037 40-41 22.567469849181183 27.300805286726685 27.869559651045968 22.262165213046163 42-43 22.406300773709276 27.387932489010492 27.769407533963914 22.436359203316318 44-45 22.431451492435013 27.530407629593444 27.657760907296435 22.380379970675108 46-47 22.5317333742871 27.432240535840414 27.437123072047857 22.59890301782462 48-49 22.472430425924607 27.489757375304553 27.490001802838233 22.547810395932608 50-51 22.422261325596395 27.632434806090085 27.463538782807383 22.48176508550614 52-53 22.61818548276051 27.57348546360401 27.321522981296535 22.48680607233895 54-55 22.566130054620658 27.42205141409052 27.392801409444928 22.619017121843896 56-57 22.566772650641493 27.603846926615596 27.307132027530923 22.522248395211992 58-59 22.479553610222972 27.681650441336952 27.396200838441164 22.442595109998912 60-61 22.585019911504073 27.6340407079991 27.366831762490236 22.414107618006586 62-63 22.578643830828383 27.728820679238993 27.26931142957008 22.42322406036255 64-65 22.487792228733518 27.6795513474234 27.31483700760827 22.517819416234815 66-67 22.57338015548628 27.698781206315225 27.1477067092012 22.5801319289973 68-69 22.548457259221763 27.631960693221735 27.31421936153118 22.505362686025325 70-71 22.492200056726862 27.416708885698416 27.33356684175863 22.7575242158161 72-73 22.581061844098166 27.47657417935196 27.262543897650932 22.679820078898942 74-75 22.414766401802844 27.598771185025857 27.298288658720114 22.688173754451185 76-77 22.54454681882795 27.58334570343341 27.183544653198766 22.688562824539872 78-79 22.459959536580975 27.610737326407254 27.154220581850147 22.775082555161628 80-81 22.50355683101625 27.621420941604914 27.1895206759213 22.68550155145753 82-83 22.542259855576905 27.60844433219578 27.33283101649897 22.516464795728343 84-85 22.660266190825723 27.54445927225878 27.22028089158275 22.574993645332746 86-87 22.451910196948084 27.59277016053615 27.28506199722844 22.67025764528733 88-89 22.48721804223969 27.566909441071164 27.314241279036445 22.631631237652705 90-91 22.49393915650013 27.621396230912644 27.306557065643762 22.578107546943464 92-93 22.560437761959015 27.59372406275937 27.32633069708907 22.519507478192544 94-95 22.39505518995837 27.702498784618168 27.332840779421087 22.569605246002382 96-97 22.40733917874906 27.824005628893183 27.45016647119012 22.318488721167643 98-99 23.509543465162047 29.7604455438823 27.653634631334047 19.076376359621605 100 30.11187425389794 41.347720061694574 28.54040568440749 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1373.0 1 1173.5 2 1412.5 3 1994.5 4 2629.5 5 4113.5 6 5496.0 7 6481.0 8 7188.5 9 7261.0 10 6709.5 11 6079.5 12 6468.5 13 8375.5 14 12935.5 15 19114.5 16 24399.5 17 28015.0 18 29685.0 19 29504.0 20 28484.0 21 27586.0 22 27850.5 23 30674.0 24 36506.0 25 45568.5 26 58265.0 27 72432.0 28 86365.5 29 102672.0 30 118487.5 31 132889.0 32 149375.5 33 166505.0 34 183314.5 35 199803.0 36 216853.5 37 232158.5 38 244336.0 39 256395.5 40 270245.5 41 283477.5 42 292299.0 43 300311.0 44 309694.5 45 317877.5 46 323357.0 47 327298.0 48 329482.5 49 327996.5 50 323670.0 51 315883.5 52 302846.5 53 285934.5 54 268866.5 55 250737.0 56 230980.5 57 210301.0 58 188866.0 59 164860.5 60 140804.5 61 118077.0 62 95759.0 63 75637.0 64 58567.0 65 45892.5 66 35669.5 67 27109.0 68 20604.0 69 15723.0 70 11536.5 71 8241.0 72 5881.5 73 4131.0 74 2843.0 75 1947.0 76 1324.0 77 847.5 78 526.5 79 330.0 80 225.5 81 157.0 82 111.5 83 76.5 84 59.0 85 48.0 86 33.5 87 21.5 88 14.5 89 11.0 90 7.0 91 3.5 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005258512165080486 22-23 0.004709711184170373 24-25 0.0033990172239532794 26-27 0.01590855903143527 28-29 0.0202905968136752 30-31 0.03806399984138279 32-33 0.022570193370425134 34-35 0.011769051290398845 36-37 0.006755112867548898 38-39 0.002987255664451763 40-41 0.007446937907786342 42-43 0.009319463699937318 44-45 0.005895302608414615 46-47 0.0022984724600909417 48-49 0.010309334850899023 50-51 0.00468010438205287 52-53 2.2697272778926217E-5 54-55 5.964671252173376E-4 56-57 6.7308152038439E-4 58-59 5.559404507909702E-4 60-61 0.001164865285706984 62-63 0.0010902593662899499 64-65 0.0 66-67 2.546282796738458E-4 68-69 6.74128408145635E-4 70-71 3.2048970827424305E-4 72-73 7.603301097045289E-4 74-75 3.373572557111772E-4 76-77 0.0 78-79 2.6642865706635406E-5 80-81 4.8643267213320903E-4 82-83 0.0019279676561953047 84-85 0.0 86-87 6.488318769408536E-4 88-89 3.5346096076229876E-4 90-91 0.008680509146369617 92-93 7.722635410718958E-4 94-95 4.042848534477513E-5 96-97 2.1825424457736934E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 520.0 22-23 1003.0 24-25 2176.0 26-27 3799.0 28-29 8735.0 30-31 19606.0 32-33 25905.0 34-35 36407.0 36-37 55666.0 38-39 63799.0 40-41 64085.0 42-43 69651.0 44-45 81011.0 46-47 80790.0 48-49 75711.0 50-51 69008.0 52-53 68730.0 54-55 74585.0 56-57 77667.0 58-59 76136.0 60-61 73769.0 62-63 71799.0 64-65 75727.0 66-67 79444.0 68-69 79717.0 70-71 77224.0 72-73 72501.0 74-75 73934.0 76-77 74818.0 78-79 79145.0 80-81 79156.0 82-83 76638.0 84-85 77196.0 86-87 82058.0 88-89 88106.0 90-91 93555.0 92-93 98425.0 94-95 119501.0 96-97 267913.0 98-99 1512760.0 100-101 3075149.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.46218979205244 #Duplication Level Percentage of deduplicated Percentage of total 1 91.0125265043265 78.69142340071282 2 6.268475623879246 10.839722581974033 3 1.4827795550102785 3.846131019152213 4 0.5514468434593758 1.9071720655765116 5 0.2580846724805698 1.1157282967217361 6 0.1388786322054421 0.720465039348455 7 0.07380348599954771 0.4466847709665585 8 0.05661092921590108 0.3915763924935749 9 0.035296335398124525 0.2746618605140923 >10 0.12030535881701418 1.5755257939777532 >50 0.0013518617867861883 0.07736390296382845 >100 3.652996691433639E-4 0.05532726071307057 >500 2.496600565802219E-5 0.0119155576679346 >1k 4.9931746380092057E-5 0.04630205721743951 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.745859072901872E-5 0.0 0.0 0.0 3 0.0 2.745859072901872E-5 0.0 0.0 0.0 4 0.0 5.491718145803744E-5 0.0 1.372929536450936E-5 0.0 5 0.0 5.491718145803744E-5 0.0 1.372929536450936E-5 0.0 6 8.237577218705616E-5 5.491718145803744E-5 0.0 1.372929536450936E-5 4.118788609352808E-5 7 8.237577218705616E-5 5.491718145803744E-5 0.0 1.372929536450936E-5 5.491718145803744E-5 8 8.237577218705616E-5 6.86464768225468E-5 0.0 1.372929536450936E-5 5.491718145803744E-5 9 8.237577218705616E-5 1.7848083973862167E-4 0.0 1.372929536450936E-5 6.86464768225468E-5 10-11 8.924041986931083E-5 1.7848083973862167E-4 0.0 4.118788609352808E-5 6.86464768225468E-5 12-13 1.0983436291607488E-4 1.8534548742087635E-4 0.0 4.118788609352808E-5 6.86464768225468E-5 14-15 1.0983436291607488E-4 1.990747827853857E-4 0.0 4.805253377578276E-5 8.237577218705616E-5 16-17 1.4415760132734828E-4 2.0593943046764038E-4 0.0 5.491718145803744E-5 8.237577218705616E-5 18-19 1.5102224900960295E-4 2.0593943046764038E-4 0.0 8.237577218705616E-5 9.610506755156553E-5 20-21 1.5102224900960295E-4 2.3339802119665912E-4 0.0 9.610506755156551E-5 1.0983436291607488E-4 22-23 1.5102224900960295E-4 2.6085661192567784E-4 0.0 1.372929536450936E-4 1.1669901059832956E-4 24-25 1.647515443741123E-4 2.9517985033695126E-4 0.0 1.7848083973862167E-4 1.4415760132734828E-4 26-27 1.647515443741123E-4 3.295030887482246E-4 0.0 2.6085661192567784E-4 1.5102224900960295E-4 28-29 1.647515443741123E-4 3.295030887482246E-4 0.0 6.109536437206665E-4 1.5102224900960295E-4 30-31 1.647515443741123E-4 3.63826327159498E-4 0.0 0.0018328609311619995 1.5102224900960295E-4 32-33 1.647515443741123E-4 3.706909748417527E-4 0.0 0.004166841143128591 1.647515443741123E-4 34-35 1.8534548742087635E-4 4.256081562997901E-4 0.0 0.006933294159077227 1.647515443741123E-4 36-37 1.9221013510313103E-4 4.94254633122337E-4 0.0 0.011546337401552371 1.647515443741123E-4 38-39 1.9221013510313103E-4 5.285778715336104E-4 0.0 0.0181158052334701 1.7848083973862167E-4 40-41 1.9221013510313103E-4 5.834950529916478E-4 0.0 0.0250834226309586 1.7848083973862167E-4 42-43 1.9221013510313103E-4 6.384122344496852E-4 0.0 0.032002987494671314 1.8534548742087635E-4 44-45 1.990747827853857E-4 7.207880066367414E-4 0.0 0.039567829240515974 1.9221013510313103E-4 46-47 2.0593943046764038E-4 7.825698357770335E-4 0.0 0.04747590337047336 1.990747827853857E-4 48-49 2.0593943046764038E-4 7.894344834592881E-4 0.0 0.055994931144151425 2.0593943046764038E-4 50-51 2.0593943046764038E-4 8.58080960281835E-4 0.0 0.06370393049132343 2.0593943046764038E-4 52-53 2.0593943046764038E-4 8.786749033285991E-4 0.0 0.07133741871399063 2.1280407814989506E-4 54-55 2.2653337351440442E-4 8.924041986931085E-4 0.0 0.0794171090360044 2.1966872583214977E-4 56-57 2.471273165611685E-4 9.061334940576178E-4 0.0 0.0879430014573647 2.2653337351440445E-4 58-59 2.471273165611685E-4 9.061334940576178E-4 0.0 0.09633160092507992 2.3339802119665912E-4 60-61 2.471273165611685E-4 9.473213801511459E-4 0.0 0.10426713364576634 2.471273165611685E-4 62-63 2.471273165611685E-4 9.747799708801645E-4 0.0 0.11144755512140472 2.471273165611685E-4 64-65 2.471273165611685E-4 0.0010571557430672208 0.0 0.11807194013478049 2.471273165611685E-4 66-67 2.471273165611685E-4 0.00107088503843173 0.0 0.12463454331901597 2.471273165611685E-4 68-69 2.6085661192567784E-4 0.0010983436291607488 0.0 0.13149919100127064 2.471273165611685E-4 70-71 2.6085661192567784E-4 0.0011189375722075127 0.0 0.1374302465987387 2.471273165611685E-4 72-73 2.6772125960793254E-4 0.001132666867572022 0.0 0.14233846969155078 2.471273165611685E-4 74-75 2.745859072901872E-4 0.001180719401347805 0.0 0.14644352900553909 2.5399196424342313E-4 76-77 2.745859072901872E-4 0.001263095173534861 0.0 0.15017103269700338 2.6772125960793254E-4 78-79 2.745859072901872E-4 0.0013180123549928985 0.0 0.1526491705102973 2.745859072901872E-4 80-81 2.745859072901872E-4 0.001331741650357408 0.0 0.15340428175534532 2.8145055497244185E-4 82-83 2.745859072901872E-4 0.0013866588318154453 0.0 0.15397404751297247 2.8831520265469655E-4 84-85 2.8831520265469655E-4 0.0013866588318154453 0.0 0.15414566370502883 2.8831520265469655E-4 86-87 3.020444980192059E-4 0.0014003881271799547 0.0 0.15430355060172068 2.8831520265469655E-4 88 3.020444980192059E-4 0.0014278467179089733 0.0 0.1543172798970852 2.8831520265469655E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7655 0.0 42.41253 1 GTATCAA 12875 0.0 33.04728 1 TCAACGC 14470 0.0 28.352346 4 ATCAACG 14615 0.0 28.099209 3 CAACGCA 14965 0.0 27.442026 5 AACGCAG 15305 0.0 26.832403 6 TATCAAC 15715 0.0 26.368017 2 ACGCAGA 17850 0.0 22.91451 7 CGCAGAG 18305 0.0 22.34493 8 GTACATG 19720 0.0 21.701452 1 TACATGG 19340 0.0 21.276781 2 ACATGGG 19670 0.0 20.396828 3 GCAGAGT 21895 0.0 18.605984 9 CATGGGG 15440 0.0 17.669678 4 GAGTACT 11805 0.0 17.097609 12-13 GTGGTAT 4265 0.0 16.980717 1 CAGAGTA 21640 0.0 16.724031 10-11 AGAGTAC 19355 0.0 16.710588 10-11 TGGTATC 4200 0.0 16.361742 2 AAAGGCG 3200 0.0 16.138311 94 >>END_MODULE