Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140205_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8328430 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8245 | 0.0 | 42.90706 | 1 |
GTATCAA | 13590 | 0.0 | 32.908943 | 1 |
TCAACGC | 15740 | 0.0 | 27.55431 | 4 |
ATCAACG | 15780 | 0.0 | 27.458485 | 3 |
CAACGCA | 16235 | 0.0 | 26.739437 | 5 |
AACGCAG | 16760 | 0.0 | 25.926292 | 6 |
TATCAAC | 17205 | 0.0 | 25.80372 | 2 |
ACGCAGA | 19895 | 0.0 | 21.820293 | 7 |
CGCAGAG | 20185 | 0.0 | 21.445873 | 8 |
TACATGG | 21005 | 0.0 | 21.116074 | 2 |
GTACATG | 21710 | 0.0 | 20.90241 | 1 |
ACATGGG | 21600 | 0.0 | 20.021992 | 3 |
CATGGGG | 16725 | 0.0 | 18.284424 | 4 |
AGACCGA | 13665 | 0.0 | 18.197962 | 88-89 |
CTCTTAT | 12405 | 0.0 | 18.078653 | 62-63 |
ACCGAGG | 14165 | 0.0 | 17.945017 | 90-91 |
GACCGAG | 13900 | 0.0 | 17.793491 | 90-91 |
CGAGACC | 13685 | 0.0 | 17.753069 | 86-87 |
GCAGAGT | 24510 | 0.0 | 17.561216 | 9 |
GAGACCG | 13890 | 0.0 | 17.48835 | 88-89 |