##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140203_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7716155 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.164141726028056 33.0 31.0 34.0 31.0 34.0 2 32.45395355588373 34.0 31.0 34.0 31.0 34.0 3 32.246551034809436 33.0 31.0 34.0 30.0 34.0 4 36.06886175822025 37.0 35.0 37.0 35.0 37.0 5 35.908070275934065 37.0 35.0 37.0 35.0 37.0 6 36.007745049185765 37.0 35.0 37.0 35.0 37.0 7 35.97475141440264 37.0 35.0 37.0 35.0 37.0 8 35.95180954763091 37.0 35.0 37.0 35.0 37.0 9 37.738182034964304 39.0 37.0 39.0 35.0 39.0 10-11 37.66176515375858 39.0 37.0 39.0 35.0 39.0 12-13 37.635514449878215 39.0 37.0 39.0 35.0 39.0 14-15 38.958079704205005 40.0 38.0 41.0 35.5 41.0 16-17 38.940022524171695 40.0 38.0 41.0 35.0 41.0 18-19 38.91283495471514 40.0 38.0 41.0 35.0 41.0 20-21 38.90647462272375 40.0 38.0 41.0 35.0 41.0 22-23 38.8144581580057 40.0 38.0 41.0 35.0 41.0 24-25 38.74842383912477 40.0 38.0 41.0 34.0 41.0 26-27 38.60110586272757 40.0 38.0 41.0 34.0 41.0 28-29 38.475632817215114 40.0 38.0 41.0 34.0 41.0 30-31 38.32531774729793 40.0 38.0 41.0 34.0 41.0 32-33 38.16776521713532 40.0 38.0 41.0 33.5 41.0 34-35 38.27390400806088 40.0 38.0 41.0 34.0 41.0 36-37 38.26642594510132 40.0 38.0 41.0 34.0 41.0 38-39 38.196671126470356 40.0 38.0 41.0 33.0 41.0 40-41 38.19139626495504 40.0 38.0 41.0 33.0 41.0 42-43 38.26937580225754 40.0 38.0 41.0 33.0 41.0 44-45 38.23293908458045 40.0 38.0 41.0 33.0 41.0 46-47 38.15472966897639 40.0 38.0 41.0 33.0 41.0 48-49 38.06417596639244 40.0 37.0 41.0 33.0 41.0 50-51 37.95385770934223 40.0 37.0 41.0 33.0 41.0 52-53 37.813299404283626 40.0 37.0 41.0 33.0 41.0 54-55 37.658716520599725 40.0 36.5 41.0 32.0 41.0 56-57 37.55335936586731 39.0 36.0 41.0 32.0 41.0 58-59 37.35862440437738 39.0 36.0 41.0 32.0 41.0 60-61 37.170239191240086 39.0 35.5 41.0 31.5 41.0 62-63 36.923866069903426 39.0 35.0 40.0 31.0 41.0 64-65 36.633809231055594 38.0 35.0 40.0 31.0 41.0 66-67 36.358808804915526 38.0 35.0 40.0 31.0 41.0 68-69 36.08657708185456 37.0 35.0 40.0 30.5 41.0 70-71 35.78679998511906 37.0 34.0 39.0 30.0 41.0 72-73 35.32972042983003 36.0 34.0 39.0 29.5 40.5 74-75 35.08405470405587 36.0 34.0 39.0 29.5 40.0 76-77 33.843813269312015 34.5 32.5 37.0 28.5 39.0 78-79 34.560156977334074 35.0 34.0 37.0 29.5 39.0 80-81 34.46650707616504 35.0 34.0 37.0 30.0 39.0 82-83 34.211150679951984 35.0 34.0 36.0 30.0 38.5 84-85 33.971901516160045 35.0 34.0 36.0 30.0 37.0 86-87 33.76469812250391 35.0 33.5 36.0 29.0 37.0 88-89 33.57054562317512 35.0 33.0 35.0 29.0 36.5 90-91 33.40531337366879 35.0 33.0 35.0 29.0 36.0 92-93 33.31395945806918 35.0 33.0 35.0 29.0 36.0 94-95 33.26331085746796 35.0 33.0 35.0 29.0 36.0 96-97 33.30979333947347 35.0 33.0 35.0 29.0 35.5 98-99 33.39820501376323 35.0 33.0 35.0 30.0 35.0 100 32.18226028535852 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 13.0 20 40.0 21 219.0 22 984.0 23 3521.0 24 9280.0 25 19982.0 26 36368.0 27 58283.0 28 84898.0 29 114421.0 30 146353.0 31 183182.0 32 228372.0 33 290888.0 34 390640.0 35 547530.0 36 858639.0 37 1528839.0 38 2037740.0 39 1129125.0 40 46837.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.06191490450879 20.66478706039472 14.140112530139687 24.13318550495681 2 14.655304358193947 21.233062321842937 41.20228274315381 22.909350576809302 3 18.036509116263215 26.04759754048487 30.75976312036241 25.156130222889512 4 12.333720616032208 18.11244071691147 38.866145120205594 30.68769354685073 5 12.936896679758247 37.94274479970918 36.098043649978514 13.022314870554052 6 29.97477370529752 38.18583219232895 18.625364576009684 13.214029526363843 7 26.46748283309498 32.55524286383568 23.053528603300478 17.923745699768862 8 24.384333907237476 36.88531399382205 21.342015550491144 17.388336548449324 9 25.002517445541205 16.939317574621036 21.48308321955689 36.57508176028087 10-11 23.911514219193368 27.031325835211966 29.066944611662155 19.99021533393251 12-13 24.562790664521383 24.31714370693694 29.20107877563372 21.918986852907956 14-15 21.753172402576155 25.974944774955922 26.559244857056395 25.712637965411528 16-17 21.59805628580556 29.27404905681651 27.27969435554366 21.848200301834268 18-19 21.636527519211317 28.354990276893087 28.814999180291217 21.193483023604372 20-21 22.32119874548083 27.633172124664927 28.661878621459806 21.38375050839444 22-23 21.92862967403152 27.673062482963136 28.562459826048002 21.835848016957346 24-25 21.81961341110166 27.69595938702767 28.75656090036882 21.727866301501848 26-27 21.845576415295746 27.943645757322876 28.606744423550985 21.604033403830396 28-29 21.68652687355134 27.834539769024257 28.70731541741611 21.7716179400083 30-31 21.937040525597588 27.733583122457254 28.70703890968478 21.622337442260378 32-33 21.549444562343144 27.731369748248813 28.86394943715364 21.855236252254407 34-35 21.67458511619575 27.859251687531984 28.685313456414352 21.780849739857917 36-37 21.72558924997939 27.810460107435937 28.74900330821332 21.71494733437136 38-39 21.54711602722803 27.92414982123429 28.78798211048116 21.740752041056517 40-41 21.82939545829728 27.739005361731444 28.742419602001846 21.68917957796943 42-43 21.8282800011009 27.766060614831083 28.640965156713605 21.764694227354404 44-45 21.719209879540006 28.083399417258686 28.397581670027584 21.79980903317372 46-47 22.023489483678862 27.752344135912587 28.071390561724165 22.152775818684386 48-49 21.87715010468083 27.829769447577718 28.20423257056995 22.088847877171506 50-51 21.699686266854048 28.000388181773396 28.29539077966507 22.004534771707483 52-53 21.876393578163427 28.09684829361796 28.253000421963335 21.773757706255278 54-55 21.909229035991817 27.994750679632986 28.092047100840624 22.003973183534576 56-57 22.069242213451624 28.191365341535512 27.82471395140254 21.91467849361032 58-59 21.71652060506251 28.41819454622193 28.202943924988883 21.66234092372668 60-61 21.97074766971975 28.60225443844061 27.78378559181846 21.643212300021176 62-63 21.837468705982165 28.73160201804493 27.715645468009853 21.715283807963047 64-65 21.793668475452353 28.577081117708463 27.84366214582364 21.785588261015544 66-67 21.93346846376249 28.496375943148877 27.70866410227081 21.861491490817826 68-69 21.924449509821198 28.365634528567423 27.865664471359032 21.844251490252343 70-71 21.924707943284314 27.97692074907858 27.980379488071645 22.117991819565457 72-73 22.01002696597396 28.04836981355507 27.918350699248943 22.023252521222027 74-75 21.849574752095 28.20204305467745 27.881206391414548 22.067175801813004 76-77 21.861335291794884 28.206999310439123 27.841129519980186 22.090535877785808 78-79 21.8693491551366 28.17500158083068 27.838074284129465 22.11757497990325 80-81 21.87383869501131 28.179507500363687 27.835617774594517 22.11103603003048 82-83 21.93614437482863 28.134335655202737 28.009187874494607 21.92033209547403 84-85 22.087255107322587 28.07436497123696 27.860455534570182 21.977924386870274 86-87 21.83295471719396 28.20101240894332 27.918477844706246 22.047555029156467 88-89 21.925064307454146 28.146393363175292 27.93313270606016 21.9954096233104 90-91 21.865372745589198 28.225574997165232 27.969640923699203 21.93941133354637 92-93 21.947572128256578 28.21129979236714 27.966561720681344 21.87456635869494 94-95 21.778672716566213 28.293305625148424 27.989454364325066 21.938567293960297 96-97 21.76070207025035 28.419451351162696 28.12237126826603 21.697475310320925 98-99 22.826794444343737 30.346246281312954 28.364123380524177 18.462835893819125 100 21.88674646214315 31.47802054764138 22.08145572901381 24.553777261201663 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1491.0 1 1311.0 2 1696.0 3 2434.5 4 3269.0 5 5213.5 6 6964.5 7 8269.0 8 9211.5 9 9081.0 10 8079.5 11 7113.5 12 7668.5 13 10208.0 14 16026.5 15 23840.5 16 30451.5 17 34668.5 18 36011.0 19 35289.0 20 33944.5 21 32790.0 22 33617.5 23 37878.5 24 45615.0 25 57195.0 26 73150.5 27 90893.0 28 108155.5 29 126864.0 30 144671.5 31 160540.0 32 179031.0 33 198708.0 34 218591.0 35 238018.0 36 257563.5 37 274012.5 38 283570.5 39 292825.0 40 303822.5 41 311405.0 42 315575.0 43 321842.0 44 327755.5 45 333095.0 46 340568.5 47 347054.0 48 349419.5 49 344046.5 50 332549.0 51 317300.0 52 297348.5 53 274946.0 54 252406.0 55 229810.0 56 209271.5 57 188960.0 58 166581.5 59 145412.5 60 124163.5 61 102138.0 62 81557.0 63 64122.5 64 50013.0 65 39585.0 66 31550.0 67 23917.5 68 17642.5 69 13541.5 70 9819.0 71 6379.0 72 4503.5 73 3171.0 74 2134.0 75 1360.5 76 858.5 77 545.5 78 346.5 79 234.5 80 160.5 81 97.5 82 65.0 83 44.5 84 27.0 85 20.0 86 16.0 87 9.0 88 3.5 89 3.0 90 2.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005404436536945933 22-23 0.004575359936955947 24-25 0.003539080752942671 26-27 0.01700096935351577 28-29 0.02149691876416271 30-31 0.039462114030494315 32-33 0.02383782455074242 34-35 0.01262183210344665 36-37 0.006828535217297885 38-39 0.0026891323199177723 40-41 0.007751574433873777 42-43 0.009074164117009115 44-45 0.0057879881137821425 46-47 0.002101947786510695 48-49 0.010014895758712627 50-51 0.0044880619672016675 52-53 0.0 54-55 4.6142587806100195E-4 56-57 7.071969243787038E-4 58-59 3.762463714357296E-4 60-61 9.108698882093866E-4 62-63 9.366212566496333E-4 64-65 0.0 66-67 2.013554474276803E-4 68-69 5.964976639660235E-4 70-71 2.94190727028773E-4 72-73 6.596644624756306E-4 74-75 2.847534230615777E-4 76-77 0.0 78-79 0.0 80-81 4.8097413970813645E-4 82-83 0.002307684812647617 84-85 4.32787083902268E-5 86-87 6.139920544165369E-4 88-89 2.313692575040169E-4 90-91 0.008679882148900123 92-93 7.81640245387219E-4 94-95 8.437701450122122E-5 96-97 1.5404699261277276E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 185.0 20-21 534.0 22-23 1126.0 24-25 2171.0 26-27 4417.0 28-29 10127.0 30-31 22687.0 32-33 28693.0 34-35 39256.0 36-37 59568.0 38-39 67493.0 40-41 67786.0 42-43 74272.0 44-45 84998.0 46-47 83798.0 48-49 76930.0 50-51 69894.0 52-53 68850.0 54-55 75370.0 56-57 80064.0 58-59 80764.0 60-61 78742.0 62-63 78040.0 64-65 82712.0 66-67 85214.0 68-69 84486.0 70-71 75250.0 72-73 69628.0 74-75 71350.0 76-77 71351.0 78-79 75831.0 80-81 76323.0 82-83 73060.0 84-85 75075.0 86-87 80345.0 88-89 86635.0 90-91 92092.0 92-93 98917.0 94-95 122395.0 96-97 277086.0 98-99 499062.0 100-101 4463578.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.12383156085434 #Duplication Level Percentage of deduplicated Percentage of total 1 90.8717997946187 79.17099378938036 2 6.596912253274952 11.494965439521259 3 1.4519896680420668 3.7950870979979348 4 0.5302903975581065 1.8480372510076382 5 0.21920213159916346 0.9548864795612871 6 0.11907189309739649 0.6224399734709775 7 0.06856252834638964 0.41814011197260054 8 0.04168614860278149 0.29054855914315825 9 0.025387385372271486 0.19906616582498504 >10 0.07327218036361446 0.9173067672570208 >50 0.001063617379230681 0.06466042579270873 >100 6.117712728579188E-4 0.10330283359487452 >500 1.287690342851002E-4 0.08012127251961143 >1k 2.1461438186761046E-5 0.040443832955529536 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.591964521189634E-5 0.0 0.0 0.0 3 0.0 2.591964521189634E-5 0.0 0.0 0.0 4 0.0 1.0367858084758535E-4 0.0 1.295982260594817E-5 0.0 5 0.0 1.0367858084758535E-4 0.0 1.295982260594817E-5 0.0 6 9.071875824163718E-5 1.0367858084758535E-4 0.0 1.295982260594817E-5 0.0 7 9.071875824163718E-5 1.0367858084758535E-4 0.0 1.295982260594817E-5 0.0 8 9.071875824163718E-5 1.0367858084758535E-4 0.0 1.295982260594817E-5 0.0 9 9.071875824163718E-5 1.5551787127137802E-4 0.0 1.295982260594817E-5 0.0 10-11 9.071875824163718E-5 1.5551787127137802E-4 0.0 1.295982260594817E-5 0.0 12-13 9.071875824163718E-5 1.619977825743521E-4 0.0 1.295982260594817E-5 0.0 14-15 9.071875824163718E-5 2.073571616951707E-4 0.0 1.295982260594817E-5 6.479911302974085E-6 16-17 1.4255804866542988E-4 2.2031698430111888E-4 0.0 1.295982260594817E-5 1.295982260594817E-5 18-19 1.5551787127137802E-4 2.591964521189634E-4 0.0 1.295982260594817E-5 1.295982260594817E-5 20-21 1.5551787127137802E-4 3.1103574254275605E-4 0.0 1.295982260594817E-5 1.295982260594817E-5 22-23 1.5551787127137802E-4 3.758348555724969E-4 0.0 1.9439733908922253E-5 1.295982260594817E-5 24-25 1.684776938773262E-4 4.2767414599628956E-4 0.0 7.127902433271493E-5 1.295982260594817E-5 26-27 1.684776938773262E-4 4.4063396860223776E-4 0.0 1.295982260594817E-4 1.295982260594817E-5 28-29 1.684776938773262E-4 4.4063396860223776E-4 0.0 6.285513963884863E-4 1.295982260594817E-5 30-31 1.749576051803003E-4 5.183929042379268E-4 0.0 0.0020476519717398107 1.295982260594817E-5 32-33 1.8143751648327437E-4 5.37832638146849E-4 0.0 0.005209848687591164 1.9439733908922253E-5 34-35 2.0087725039219664E-4 6.674308642063307E-4 0.0 0.009117235203284538 2.591964521189634E-5 36-37 2.073571616951707E-4 8.164688241747346E-4 0.0 0.014702918746448197 2.591964521189634E-5 38-39 2.073571616951707E-4 8.553482919925792E-4 0.0 0.023385999892433472 2.591964521189634E-5 40-41 2.073571616951707E-4 9.460670502342164E-4 0.0 0.031783964941087886 2.591964521189634E-5 42-43 2.2031698430111888E-4 0.0010043862519609832 0.0 0.03995513309413821 2.591964521189634E-5 44-45 2.2679689560409298E-4 0.0011599041232323612 0.0 0.049007569184393 2.591964521189634E-5 46-47 2.3327680690706705E-4 0.0012571027927769725 0.0 0.0593106281561218 2.591964521189634E-5 48-49 2.3327680690706705E-4 0.0012635827040799465 0.0 0.06915361342533943 3.239955651487042E-5 50-51 2.591964521189634E-4 0.0013543014623215838 0.0 0.0782125294268972 3.8879467817844506E-5 52-53 2.591964521189634E-4 0.0013607813736245579 0.0 0.0865392154512189 5.183929042379268E-5 54-55 2.591964521189634E-4 0.0013607813736245579 0.0 0.09483998183032871 5.183929042379268E-5 56-57 2.591964521189634E-4 0.0013607813736245579 0.0 0.10319906741116527 5.183929042379268E-5 58-59 2.591964521189634E-4 0.0013607813736245579 0.0 0.1106963247887063 5.183929042379268E-5 60-61 2.6567636342193746E-4 0.001393180930139428 0.0 0.11766222943940344 5.183929042379268E-5 62-63 2.980759199368079E-4 0.0014191005753513247 0.0 0.12442077692840542 5.183929042379268E-5 64-65 3.1103574254275605E-4 0.0015940581805316248 0.0 0.13120524406261927 5.183929042379268E-5 66-67 3.2399556514870425E-4 0.0016329376483494695 0.0 0.13780827368034987 5.183929042379268E-5 68-69 3.2399556514870425E-4 0.0016912568500762363 0.0 0.14386699074863063 5.831920172676677E-5 70-71 3.434352990576265E-4 0.0017171764952881325 0.0 0.14905739970231285 6.479911302974085E-5 72-73 3.7583485557249693E-4 0.0017236564065911065 0.0 0.15325638222664006 6.479911302974085E-5 74-75 3.7583485557249693E-4 0.001749576051803003 0.0 0.15707304998409183 6.479911302974085E-5 76-77 3.7583485557249693E-4 0.0017949354309238215 0.0 0.16059164182160673 6.479911302974085E-5 78-79 3.7583485557249693E-4 0.0018143751648327438 0.0 0.16313824696367557 6.479911302974085E-5 80-81 3.7583485557249693E-4 0.0018143751648327438 0.0 0.16418799259475736 6.479911302974085E-5 82-83 3.8231476687547103E-4 0.0018208550761357179 0.0 0.16471934532160126 6.479911302974085E-5 84-85 3.887946781784451E-4 0.00184029481004464 0.0 0.16492670248329638 6.479911302974085E-5 86-87 3.887946781784451E-4 0.0018921341004684328 0.0 0.16502390115284102 6.479911302974085E-5 88 3.887946781784451E-4 0.0020217323265279146 0.0 0.16504334088674993 6.479911302974085E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8295 0.0 42.936447 1 CTTATAC 7345 0.0 35.326702 1 GTATCAA 13670 0.0 32.159435 1 TATACAC 10015 0.0 28.71399 3 TCAACGC 15890 0.0 26.990362 4 ATCAACG 15905 0.0 26.860996 3 CAACGCA 16330 0.0 26.187222 5 AACGCAG 16950 0.0 25.253717 6 TATCAAC 17455 0.0 24.617771 2 TTATACA 11565 0.0 23.829529 2 ACATCTC 11985 0.0 22.236013 8 ACACATC 12085 0.0 21.91526 6 ACGCAGA 19760 0.0 21.746115 7 TACACAT 13550 0.0 21.43637 5 CGCAGAG 20140 0.0 21.33581 8 TACATGG 20045 0.0 20.365082 2 GTACATG 20785 0.0 20.335781 1 CACATCT 13285 0.0 19.749105 7 ACATGGG 20245 0.0 19.286316 3 CATCTCC 14115 0.0 18.704893 9 >>END_MODULE