##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140201_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7889019 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.170582045752454 33.0 31.0 34.0 31.0 34.0 2 32.46215708188813 34.0 31.0 34.0 31.0 34.0 3 32.25899012285304 33.0 31.0 34.0 30.0 34.0 4 36.074133298449404 37.0 35.0 37.0 35.0 37.0 5 35.91396484150945 37.0 35.0 37.0 35.0 37.0 6 36.01061386719946 37.0 35.0 37.0 35.0 37.0 7 35.977937180782554 37.0 35.0 37.0 35.0 37.0 8 35.95465038175215 37.0 35.0 37.0 35.0 37.0 9 37.74262947015339 39.0 37.0 39.0 35.0 39.0 10-11 37.66672434177177 39.0 37.0 39.0 35.0 39.0 12-13 37.64067148272808 39.0 37.0 39.0 35.0 39.0 14-15 38.97033027807387 40.0 38.0 41.0 35.5 41.0 16-17 38.95073164356684 40.0 38.0 41.0 35.0 41.0 18-19 38.91923171943178 40.0 38.0 41.0 35.0 41.0 20-21 38.91223332687052 40.0 38.0 41.0 35.0 41.0 22-23 38.81989690679441 40.0 38.0 41.0 35.0 41.0 24-25 38.757244533165604 40.0 38.0 41.0 34.0 41.0 26-27 38.610296747893244 40.0 38.0 41.0 34.0 41.0 28-29 38.48975299975248 40.0 38.0 41.0 34.0 41.0 30-31 38.3394470056993 40.0 38.0 41.0 34.0 41.0 32-33 38.18241847364103 40.0 38.0 41.0 33.5 41.0 34-35 38.28520333769529 40.0 38.0 41.0 34.0 41.0 36-37 38.279232494663624 40.0 38.0 41.0 34.0 41.0 38-39 38.212000613010034 40.0 38.0 41.0 33.0 41.0 40-41 38.19550035522221 40.0 38.0 41.0 33.0 41.0 42-43 38.26683194486868 40.0 38.0 41.0 33.0 41.0 44-45 38.22758510450252 40.0 38.0 41.0 33.0 41.0 46-47 38.14646818029512 40.0 38.0 41.0 33.0 41.0 48-49 38.05651155448693 40.0 37.0 41.0 33.0 41.0 50-51 37.94359606933155 40.0 37.0 41.0 33.0 41.0 52-53 37.79811597671626 40.0 37.0 41.0 33.0 41.0 54-55 37.63926112571451 40.0 36.0 41.0 32.0 41.0 56-57 37.527738582617815 39.0 36.0 41.0 32.0 41.0 58-59 37.32435176021605 39.0 36.0 41.0 32.0 41.0 60-61 37.125590350721836 39.0 35.0 41.0 31.0 41.0 62-63 36.86520303476718 38.5 35.0 40.0 31.0 41.0 64-65 36.56285620256053 38.0 35.0 40.0 31.0 41.0 66-67 36.2781958643482 37.5 35.0 40.0 31.0 41.0 68-69 36.00222409809733 37.0 34.5 40.0 30.0 41.0 70-71 35.69389175733434 36.5 34.0 39.0 30.0 41.0 72-73 35.23758053155997 36.0 34.0 39.0 29.5 40.5 74-75 34.99319827690747 35.5 34.0 38.5 29.5 40.0 76-77 33.760321796726835 34.5 32.5 36.5 28.5 39.0 78-79 34.47016161124102 35.0 34.0 37.0 29.5 39.0 80-81 34.38381441572611 35.0 34.0 37.0 30.0 39.0 82-83 34.14363607026185 35.0 34.0 36.0 30.0 38.5 84-85 33.9194874318071 35.0 34.0 36.0 30.0 37.0 86-87 33.721003076021105 35.0 33.5 35.5 29.5 37.0 88-89 33.54116046584707 35.0 33.0 35.0 29.0 36.5 90-91 33.38506640376606 35.0 33.0 35.0 29.0 36.0 92-93 33.29981817609629 35.0 33.0 35.0 29.0 36.0 94-95 33.25873981755819 35.0 33.0 35.0 29.0 36.0 96-97 33.30358722558316 35.0 33.0 35.0 29.0 35.0 98-99 33.392010906124234 35.0 33.0 35.0 30.0 35.0 100 32.193976604997566 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 38.0 21 216.0 22 1078.0 23 3585.0 24 9536.0 25 20653.0 26 37271.0 27 60172.0 28 86815.0 29 116574.0 30 149299.0 31 187104.0 32 233006.0 33 297130.0 34 399395.0 35 562163.0 36 889980.0 37 1578410.0 38 2051470.0 39 1156214.0 40 48904.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.635075286293514 20.140717115778273 13.83137751347791 24.3928300844503 2 14.998506151398544 21.016732245162547 40.614542822117684 23.370218781321224 3 18.40535559617742 25.516176345880265 30.407659051144382 25.670809006797928 4 12.74247152909633 17.705255875286902 38.185368801875114 31.366903793741656 5 13.363448611291215 37.546962429675986 35.70824205138814 13.381346907644664 6 30.771050240847437 37.43566849059433 18.378571530883626 13.414709737674608 7 27.0240824619639 32.1946619725469 22.72435901092392 18.056896554565277 8 24.757209990240867 36.611497576568134 21.00878448892061 17.622507944270385 9 25.24714416329838 16.826959093392983 21.134161294325697 36.79173544898295 10-11 24.378183142923092 26.652470985302486 28.718653105031184 20.250692766743242 12-13 24.94048372807823 23.944149456351923 28.959868140766297 22.155498674803546 14-15 22.027390224310526 25.593549717651843 26.262910508898507 26.116149549139127 16-17 21.970843269613116 28.84425807568723 26.96425246282206 22.220646191877595 18-19 22.041016760132027 27.987275730987594 28.471575489931006 21.500132018949376 20-21 22.619800234801627 27.21860726201552 28.368484910870585 21.793107592312268 22-23 22.33184122568183 27.275193706067807 28.22362952861941 22.16933553963095 24-25 22.22775991500258 27.299797612509806 28.336233066801313 22.1362094056863 26-27 22.23638508084543 27.51770977547637 28.233148041277712 22.01275710240049 28-29 22.13824122664407 27.511360319458873 28.273143837876553 22.077254616020504 30-31 22.337161268334576 27.376724766832115 28.249362659285882 22.036751305547426 32-33 22.008937979868012 27.39365579659725 28.383742424471542 22.213663799063195 34-35 22.129355538989103 27.500795078789043 28.24534375977832 22.124505622443543 36-37 22.180496490655415 27.483813338242445 28.27058616960878 22.06510400149336 38-39 22.04755887507672 27.50987382558226 28.309819673080934 22.132747626260088 40-41 22.308459161643547 27.34190012975916 28.22321858526733 22.126422123329963 42-43 22.248871386072206 27.408298585419278 28.119433743458373 22.22339628505014 44-45 22.185075270993334 27.617131677412804 27.975733150431747 22.222059901162112 46-47 22.414545489079725 27.47831224733518 27.65044399816438 22.456698265420716 48-49 22.29861168602283 27.520498777617558 27.724165114919874 22.456724421439738 50-51 22.219861441040116 27.65994117050524 27.772902352020612 22.34729503643404 52-53 22.352946209363598 27.660048967903805 27.72940800901261 22.25759681371999 54-55 22.31309937399179 27.572148167302895 27.645549761637984 22.46920269706733 56-57 22.3923815861322 27.785275517122322 27.491041135663107 22.33130176108237 58-59 22.22624223814358 27.940258999021356 27.70110716318936 22.132391599645704 60-61 22.423737638330323 28.026817850247703 27.43428347626729 22.115161035154678 62-63 22.293858809171493 28.16927899872962 27.364584770641333 22.17227742145756 64-65 22.287966557019484 28.04583195606568 27.387565110931718 22.278636375983123 66-67 22.329361093096516 27.95887707146762 27.356389591239942 22.35537224419592 68-69 22.29089251932207 27.897707622415858 27.470933062673442 22.340466795588632 70-71 22.328559994694984 27.623028616779333 27.53400364727573 22.514407741249958 72-73 22.410258434404152 27.664823424081487 27.422996908272847 22.50192123324152 74-75 22.247614901293524 27.7773656023638 27.515954597323024 22.459064899019655 76-77 22.403796955933572 27.686348109178233 27.423577233528086 22.48627770136011 78-79 22.291622148643757 27.727999354089565 27.41521459461597 22.56516390265071 80-81 22.27240229980835 27.773277226897758 27.458145154570452 22.49617531872344 82-83 22.301773792157324 27.740339509303396 27.54595873192048 22.4119279666188 84-85 22.413469202573726 27.70956576201954 27.475691918154936 22.401273117251794 86-87 22.292500546759193 27.760890922408795 27.51016277802271 22.436445752809302 88-89 22.301572982711953 27.74875548697485 27.484304177412746 22.465367352900444 90-91 22.319013091397956 27.82483420234636 27.51099533227377 22.345157373981916 92-93 22.359471551143866 27.77615891564898 27.55679676758249 22.307572765624663 94-95 22.182293234543643 27.84528125702494 27.62482477740059 22.347600731030823 96-97 22.228184065111602 27.983805779397976 27.676940162733153 22.11106999275727 98-99 23.300374627056183 29.96287656029598 27.853459323849318 18.883289488798518 100 22.26819546369812 31.021808843974323 21.587627741410532 25.122367950917024 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1858.0 1 1534.0 2 1820.0 3 2565.5 4 3289.5 5 5054.0 6 6745.0 7 8084.0 8 9077.0 9 9063.5 10 8204.5 11 7338.5 12 7859.0 13 10156.0 14 15441.5 15 22543.0 16 28435.5 17 32347.5 18 33923.0 19 33604.0 20 32535.0 21 31706.0 22 32652.0 23 36926.5 24 44235.5 25 54333.5 26 68261.0 27 84095.5 28 100581.0 29 119538.5 30 138027.5 31 154907.5 32 171864.0 33 187787.5 34 203564.0 35 219046.5 36 235647.0 37 252787.0 38 266287.0 39 278523.0 40 292570.0 41 305047.0 42 313581.0 43 321854.5 44 330878.5 45 339653.5 46 348638.5 47 355883.5 48 359998.0 49 357250.0 50 349865.0 51 340361.5 52 325875.5 53 307606.0 54 288544.0 55 268095.5 56 246837.0 57 225158.0 58 200740.5 59 174991.5 60 147995.5 61 121775.0 62 99069.0 63 78669.5 64 60482.0 65 46289.5 66 35450.5 67 27374.5 68 20913.5 69 15570.0 70 11444.5 71 8194.5 72 5842.5 73 4056.5 74 2750.5 75 1859.5 76 1271.5 77 832.5 78 563.5 79 377.5 80 241.0 81 152.5 82 111.0 83 74.5 84 46.0 85 33.0 86 26.0 87 20.5 88 14.0 89 8.5 90 7.0 91 7.0 92 5.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.004709248285450166 22-23 0.004589199458525173 24-25 0.00344253567921958 26-27 0.016977746721319326 28-29 0.021280794080169252 30-31 0.03923101363592462 32-33 0.022926382391007347 34-35 0.01271579944807665 36-37 0.006799843481138298 38-39 0.002672440351586513 40-41 0.007155444817570621 42-43 0.009220035993270632 44-45 0.005588595352124728 46-47 0.001912915278135507 48-49 0.009870345665270907 50-51 0.00427559989408173 52-53 2.1039138478136723E-5 54-55 4.607514870931458E-4 56-57 6.095038137012155E-4 58-59 3.7740428301605245E-4 60-61 9.036374271635173E-4 62-63 8.47508911110143E-4 64-65 0.0 66-67 2.2870244675787983E-4 68-69 5.254103918757955E-4 70-71 3.131639810376078E-4 72-73 7.212498514899002E-4 74-75 3.8499263420863284E-4 76-77 0.0 78-79 0.0 80-81 2.916415125862061E-4 82-83 0.002263332867435834 84-85 2.5675962506247814E-5 86-87 6.769353712443756E-4 88-89 2.466643926558848E-4 90-91 0.008812506666473222 92-93 7.382807501224088E-4 94-95 3.7187432655883676E-5 96-97 2.770227316256315E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 195.0 20-21 515.0 22-23 1191.0 24-25 2405.0 26-27 4603.0 28-29 10794.0 30-31 24128.0 32-33 30781.0 34-35 41915.0 36-37 64379.0 38-39 73318.0 40-41 72875.0 42-43 78185.0 44-45 90267.0 46-47 88090.0 48-49 82657.0 50-51 74859.0 52-53 74494.0 54-55 79644.0 56-57 83554.0 58-59 83587.0 60-61 81384.0 62-63 79891.0 64-65 84449.0 66-67 87505.0 68-69 86482.0 70-71 79622.0 72-73 74628.0 74-75 75752.0 76-77 75649.0 78-79 80461.0 80-81 80770.0 82-83 78273.0 84-85 79736.0 86-87 84202.0 88-89 90690.0 90-91 96483.0 92-93 102949.0 94-95 125673.0 96-97 286001.0 98-99 503998.0 100-101 4491985.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.05216092093295 #Duplication Level Percentage of deduplicated Percentage of total 1 90.94211144619918 79.16707320103949 2 6.467718169336231 11.26057685736599 3 1.4723429651311517 3.845119101942017 4 0.5249282588612065 1.8278455704932357 5 0.2322478544726865 1.0108838800548863 6 0.1253250104158739 0.6545887784484151 7 0.07182930821883945 0.4377027548533991 8 0.03949843740963811 0.2750739463607372 9 0.03133383603539825 0.24549103231412545 >10 0.09166988350604546 1.1710667986259669 >50 7.690736930827645E-4 0.04359222419384692 >100 1.8238300436278993E-4 0.03702855731526205 >500 4.3373716277012156E-5 0.023957296992569026 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2675847275814648E-5 0.0 0.0 0.0 3 0.0 1.2675847275814648E-5 0.0 0.0 0.0 4 0.0 5.070338910325859E-5 0.0 0.0 0.0 5 0.0 7.605508365488788E-5 0.0 0.0 0.0 6 1.1408262548233183E-4 7.605508365488788E-5 0.0 0.0 0.0 7 1.1408262548233183E-4 7.605508365488788E-5 0.0 0.0 0.0 8 1.1408262548233183E-4 1.1408262548233183E-4 0.0 0.0 1.2675847275814648E-5 9 1.1408262548233183E-4 1.3943432003396113E-4 0.0 0.0 1.2675847275814648E-5 10-11 1.1408262548233183E-4 1.3943432003396113E-4 0.0 0.0 1.2675847275814648E-5 12-13 1.1408262548233183E-4 1.3943432003396113E-4 0.0 6.337923637907324E-6 1.2675847275814648E-5 14-15 1.1408262548233183E-4 2.53516945516293E-4 0.0 1.2675847275814648E-5 1.2675847275814648E-5 16-17 1.6478601458559043E-4 2.53516945516293E-4 0.0 1.2675847275814648E-5 1.2675847275814648E-5 18-19 1.6478601458559043E-4 2.661927927921076E-4 0.0 1.2675847275814648E-5 1.2675847275814648E-5 20-21 1.6478601458559043E-4 2.7886864006792226E-4 0.0 2.5351694551629296E-5 1.2675847275814648E-5 22-23 1.6478601458559043E-4 2.7886864006792226E-4 0.0 3.802754182744394E-5 1.901377091372197E-5 24-25 1.7112393822349775E-4 3.042203346195516E-4 0.0 5.070338910325859E-5 2.5351694551629296E-5 26-27 1.7746186186140507E-4 3.168961818953662E-4 0.0 1.0774470184442451E-4 2.5351694551629296E-5 28-29 1.7746186186140507E-4 3.168961818953662E-4 0.0 6.591440583423617E-4 2.5351694551629296E-5 30-31 1.7746186186140507E-4 3.612616473607175E-4 0.0 0.002287990433284544 2.5351694551629296E-5 32-33 1.7746186186140507E-4 3.866133419123468E-4 0.0 0.005089352681239581 2.5351694551629296E-5 34-35 1.7746186186140507E-4 4.6900634920514196E-4 0.0 0.00869563123120885 3.168961818953662E-5 36-37 1.7746186186140507E-4 5.640752037737518E-4 0.0 0.014799051694513603 3.802754182744394E-5 38-39 1.837997854993124E-4 5.767510510495665E-4 0.0 0.024362978464115753 3.802754182744394E-5 40-41 1.9013770913721973E-4 6.337923637907324E-4 0.0 0.03381916053187348 3.802754182744394E-5 42-43 1.9013770913721973E-4 6.654819819802691E-4 0.0 0.043040839425028635 3.802754182744394E-5 44-45 1.9647563277512705E-4 7.605508365488789E-4 0.0 0.05253504903461381 3.802754182744394E-5 46-47 2.0281355641303437E-4 8.239300729279522E-4 0.0 0.06302431265535044 3.802754182744394E-5 48-49 2.0281355641303437E-4 8.239300729279522E-4 0.0 0.07348822458153542 3.802754182744394E-5 50-51 2.1548940368884903E-4 9.506885456860986E-4 0.0 0.08309651681660293 3.802754182744394E-5 52-53 2.1548940368884903E-4 9.633643929619133E-4 0.0 0.0919062306732941 4.4365465465351267E-5 54-55 2.1548940368884903E-4 9.697023165998206E-4 0.0 0.10051946889721017 5.070338910325859E-5 56-57 2.2816525096466366E-4 9.887160875135426E-4 0.0 0.10850525268097339 5.070338910325859E-5 58-59 2.2816525096466366E-4 0.001014067782065172 0.0 0.11652906400656406 5.070338910325859E-5 60-61 2.34503174602571E-4 0.0010204057057030791 0.0 0.12440710308848288 5.070338910325859E-5 62-63 2.4084109824047833E-4 0.0010901228657200597 0.0 0.13127741231197443 5.070338910325859E-5 64-65 2.4084109824047833E-4 0.001191529643926577 0.0 0.1382554662373104 5.070338910325859E-5 66-67 2.4084109824047833E-4 0.001191529643926577 0.0 0.14549337503180054 5.7041312741165916E-5 68-69 2.4084109824047833E-4 0.0012232192621161135 0.0 0.15219889824070648 6.337923637907325E-5 70-71 2.4084109824047833E-4 0.001248570956667743 0.0 0.1579410570566505 6.337923637907325E-5 72-73 2.53516945516293E-4 0.00125490888030565 0.0 0.1624409828395647 6.337923637907325E-5 74-75 2.5985486915420034E-4 0.0012802605748572795 0.0 0.16625641286958492 6.337923637907325E-5 76-77 2.725307164300149E-4 0.0012992743457710015 0.0 0.17010987044143258 6.337923637907325E-5 78-79 2.7886864006792226E-4 0.0013056122694089089 0.0 0.17265137782023343 6.337923637907325E-5 80-81 2.7886864006792226E-4 0.0013056122694089089 0.0 0.17349432166407508 6.337923637907325E-5 82-83 2.7886864006792226E-4 0.0013056122694089089 0.0 0.17400769347874556 7.605508365488788E-5 84-85 2.7886864006792226E-4 0.001330963963960538 0.0 0.17415346572241747 7.605508365488788E-5 86-87 2.915444873437369E-4 0.0013563156585121674 0.0 0.1742041691115207 7.605508365488788E-5 88 3.0422033461955153E-4 0.0014323707421670553 0.0 0.17421684495879652 7.605508365488788E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7775 0.0 44.907875 1 GTATCAA 13240 0.0 33.142986 1 TCAACGC 15430 0.0 27.879244 4 ATCAACG 15450 0.0 27.710058 3 CAACGCA 15905 0.0 26.96906 5 TATCAAC 16410 0.0 26.28949 2 AACGCAG 16455 0.0 26.192598 6 CTTATAC 6385 0.0 25.828468 1 ACGCAGA 19300 0.0 22.28895 7 TATACAC 8745 0.0 21.867964 3 CGCAGAG 19725 0.0 21.746155 8 GTACATG 19245 0.0 20.237053 1 TACATGG 19085 0.0 20.04038 2 ACATGGG 19560 0.0 19.30141 3 TTATACA 9555 0.0 19.024218 2 GCAGAGT 24005 0.0 17.783237 9 CATGGGG 15110 0.0 17.4193 4 ACATCTC 10145 0.0 17.390835 8 GAGTACT 13710 0.0 17.128284 12-13 TACACAT 11265 0.0 16.86654 5 >>END_MODULE