##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140200_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8948288 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.138548736920406 33.0 31.0 34.0 30.0 34.0 2 32.43197827338592 34.0 31.0 34.0 31.0 34.0 3 32.22520039587461 33.0 31.0 34.0 30.0 34.0 4 36.05417840820501 37.0 35.0 37.0 35.0 37.0 5 35.88790794395531 37.0 35.0 37.0 35.0 37.0 6 35.98570832767117 37.0 35.0 37.0 35.0 37.0 7 35.94841381949262 37.0 35.0 37.0 35.0 37.0 8 35.9230861814014 37.0 35.0 37.0 35.0 37.0 9 37.7105517837602 39.0 37.0 39.0 35.0 39.0 10-11 37.63300236872126 39.0 37.0 39.0 35.0 39.0 12-13 37.60168950753485 39.0 37.0 39.0 35.0 39.0 14-15 38.91822268125478 40.0 38.0 41.0 35.0 41.0 16-17 38.88941068950843 40.0 38.0 41.0 35.0 41.0 18-19 38.85515659531745 40.0 38.0 41.0 35.0 41.0 20-21 38.842668733671005 40.0 38.0 41.0 35.0 41.0 22-23 38.74752995472559 40.0 38.0 41.0 34.0 41.0 24-25 38.67914056474283 40.0 38.0 41.0 34.0 41.0 26-27 38.51847819090739 40.0 38.0 41.0 34.0 41.0 28-29 38.38374504035774 40.0 38.0 41.0 34.0 41.0 30-31 38.23164774253931 40.0 38.0 41.0 34.0 41.0 32-33 38.08081436826885 40.0 37.5 41.0 33.0 41.0 34-35 38.19044526724062 40.0 38.0 41.0 33.5 41.0 36-37 38.17640384520105 40.0 38.0 41.0 33.0 41.0 38-39 38.09437460944824 40.0 38.0 41.0 33.0 41.0 40-41 38.095344214128204 40.0 37.5 41.0 33.0 41.0 42-43 38.18578438778416 40.0 38.0 41.0 33.0 41.0 44-45 38.15164621660511 40.0 38.0 41.0 33.0 41.0 46-47 38.07182043999993 40.0 37.0 41.0 33.0 41.0 48-49 37.976628957867504 40.0 37.0 41.0 33.0 41.0 50-51 37.83521255185227 40.0 37.0 41.0 33.0 41.0 52-53 37.693256560638844 40.0 37.0 41.0 32.5 41.0 54-55 37.52483982861142 39.0 36.0 41.0 32.0 41.0 56-57 37.396789539538496 39.0 36.0 41.0 32.0 41.0 58-59 37.19367663479607 39.0 35.5 41.0 31.0 41.0 60-61 36.98662158431047 39.0 35.0 40.5 31.0 41.0 62-63 36.73172192872373 38.0 35.0 40.0 31.0 41.0 64-65 36.44337664088149 38.0 35.0 40.0 31.0 41.0 66-67 36.16294668812925 37.0 35.0 40.0 30.0 41.0 68-69 35.89489551947497 37.0 34.0 39.5 30.0 41.0 70-71 35.59452807138585 36.5 34.0 39.0 30.0 41.0 72-73 35.1354804801709 36.0 34.0 39.0 29.0 40.0 74-75 34.894938987164366 35.5 34.0 38.5 29.0 40.0 76-77 33.668612315626156 34.5 32.0 36.5 28.0 39.0 78-79 34.38781824869767 35.0 33.5 37.0 29.5 39.0 80-81 34.30578026137981 35.0 34.0 36.5 30.0 39.0 82-83 34.06748391700106 35.0 34.0 36.0 30.0 37.5 84-85 33.846516217958936 35.0 34.0 36.0 29.0 37.0 86-87 33.656007942249296 35.0 33.0 35.5 29.0 37.0 88-89 33.479571127739284 35.0 33.0 35.0 29.0 36.0 90-91 33.32776128758367 35.0 33.0 35.0 29.0 36.0 92-93 33.24255736751106 35.0 33.0 35.0 29.0 36.0 94-95 33.2076378216835 35.0 33.0 35.0 29.0 36.0 96-97 33.25830087345519 35.0 33.0 35.0 29.0 35.0 98-99 33.35296621101902 35.0 33.0 35.0 29.5 35.0 100 32.18257179150968 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 9.0 20 44.0 21 286.0 22 1291.0 23 4368.0 24 11886.0 25 24960.0 26 45301.0 27 71631.0 28 103597.0 29 137243.0 30 176261.0 31 218658.0 32 271830.0 33 346870.0 34 463290.0 35 648977.0 36 1020305.0 37 1792645.0 38 2310019.0 39 1248120.0 40 50697.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.96896523670226 20.271274237038416 13.826376620868707 24.93338390539062 2 14.909645286338572 20.747398832044745 40.747749737156425 23.59520614446026 3 18.216680106853957 25.409609078295198 30.867781635995623 25.50592917885522 4 12.584518960498366 17.932167583341084 37.363001727257775 32.12031172890278 5 13.255082983471253 37.44354227311415 35.767992715478094 13.533382027936517 6 30.79827113298097 37.24258763240522 18.106055594098 13.853085640515816 7 26.854656443780083 32.19423648411853 22.10187021249204 18.84923685960935 8 24.921638641939108 36.44682647675175 21.004151855639872 17.627383025669268 9 25.010169543045553 16.510934829098034 20.57256091891544 37.906334708940975 10-11 24.35530684752212 26.40930309797807 28.548019464728895 20.687370589770914 12-13 24.968977306050053 23.622730962615417 28.584730397591134 22.823561333743392 14-15 22.14787342562063 25.39748385389473 25.57454006844661 26.880102652038023 16-17 22.328338113391073 28.887413994721673 26.33093615225616 22.45331173963109 18-19 22.49790686218414 27.62691589720849 27.743820940944236 22.131356299663132 20-21 22.899528072745117 26.950303602938913 27.644092717044433 22.50607560727154 22-23 22.45769280938434 27.344624192728297 27.604850174596134 22.59283282329123 24-25 22.596113804656365 27.26596070428696 27.735829671996132 22.402095819060534 26-27 22.658179478155795 27.495774030842824 27.76682772334192 22.079218767659466 28-29 22.256028370898026 27.12543458552206 27.91238829750826 22.70614874607165 30-31 22.42722523329624 27.12973453475224 28.094894478074316 22.348145753877205 32-33 21.928415912934643 26.91538229799753 28.52572445907573 22.630477329992097 34-35 22.01520034664128 27.14956450704149 28.101060256031996 22.73417489028523 36-37 22.20351184743306 27.26658775879286 28.191768182699533 22.338132211074544 38-39 22.19960043224403 27.031182909736096 28.143007420953513 22.62620923706636 40-41 22.30958959858991 26.867417625486084 28.32325783927762 22.499734936646387 42-43 22.527955545752146 26.824948252111913 28.3417215795632 22.305374622572742 44-45 22.149564081674313 27.297182341461117 28.085800449979065 22.46745312688551 46-47 22.801091685356827 26.785305626225703 27.42438586720379 22.989216821213684 48-49 22.48845824793802 26.871758996045124 27.714615124295932 22.92516763172092 50-51 22.244500696572725 27.18036193400102 27.90001306532614 22.675124304100112 52-53 22.31339689425321 27.407239903177246 28.152729633759094 22.12663356881045 54-55 22.240349109223278 27.441673663925513 27.605140543841184 22.712836683010025 56-57 22.66431672014788 27.85930565217818 27.002986153095154 22.473391474578786 58-59 22.031876643898734 28.23059208877754 27.783928411119756 21.95360285620397 60-61 22.581823244781326 28.584426053037426 26.876613160879053 21.957137541302192 62-63 22.15614121998745 28.920116252187984 26.8577033587635 22.066039169061067 64-65 22.218243573612796 28.58361130052711 26.96954335922837 22.228601766631723 66-67 22.33262316987031 28.28284274248797 27.004228124300013 22.380305963341716 68-69 22.418271480643 27.94298886117123 27.219164977069564 22.419574681116202 70-71 22.471376034151643 27.50772973794921 27.332029556039895 22.68886467185925 72-73 22.545966607119976 27.570601195778217 27.258810045004804 22.624622152097004 74-75 22.408909242147846 27.68433683200081 27.278635754252438 22.628118171598903 76-77 22.541563154933844 27.598823528895906 27.231450358873964 22.628162957296286 78-79 22.480424007394 27.575552874890207 27.230319534240362 22.71370358347544 80-81 22.43936070460802 27.62845067395671 27.25808063708629 22.674107984348982 82-83 22.50753193398522 27.607460992394206 27.374440001868244 22.51056707175233 84-85 22.615475447772955 27.567360613619872 27.252333655805312 22.56483028280186 86-87 22.434789530605663 27.63645735598398 27.329372053876927 22.59938105953343 88-89 22.498351313399404 27.597139915810192 27.292357192299026 22.61215157849138 90-91 22.50885350305098 27.64331999217652 27.318857093389337 22.528969411383166 92-93 22.54155662320332 27.594252128744547 27.39679656898668 22.46739467906546 94-95 22.31889041627841 27.70716839595304 27.416839511432915 22.55710167633563 96-97 22.399613378617357 27.811976468174006 27.472682578154167 22.31572757505447 98-99 23.496100472815364 29.808794598591497 27.677079570380535 19.0180253582126 100 30.14359918072616 41.2755255408942 28.58087527837964 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1675.0 1 1444.5 2 1740.5 3 2431.0 4 3204.0 5 5078.0 6 6830.5 7 8021.5 8 8870.5 9 8815.0 10 8061.5 11 7425.0 12 8040.5 13 10375.0 14 16099.5 15 24052.0 16 30741.0 17 35177.0 18 36943.5 19 36490.0 20 35261.5 21 34183.5 22 34573.0 23 38092.5 24 45059.0 25 55735.5 26 70067.5 27 86421.5 28 104116.5 29 124053.0 30 143152.0 31 161807.5 32 183052.0 33 203905.0 34 223734.0 35 243276.5 36 263944.5 37 283417.0 38 299688.5 39 314898.0 40 330249.0 41 344102.0 42 354778.5 43 364686.0 44 376308.0 45 388907.0 46 409923.0 47 433717.0 48 450919.5 49 449312.5 50 431856.5 51 413101.0 52 389642.5 53 363193.5 54 334822.0 55 307539.0 56 281479.0 57 255376.0 58 227976.0 59 197277.0 60 166516.5 61 137944.5 62 111406.5 63 87965.0 64 67581.0 65 52127.5 66 40342.0 67 31118.5 68 23767.5 69 17862.0 70 13283.0 71 9531.5 72 6842.5 73 4880.5 74 3358.0 75 2274.5 76 1547.5 77 1010.0 78 686.0 79 457.0 80 283.5 81 185.0 82 142.0 83 101.5 84 65.5 85 40.0 86 23.5 87 15.5 88 12.0 89 11.0 90 9.0 91 7.0 92 6.0 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005023520020152194 22-23 0.0048395677695963375 24-25 0.0032810377648564634 26-27 0.015656017611230554 28-29 0.020697659401913183 30-31 0.03863318785908909 32-33 0.023185368171331266 34-35 0.012045372597596176 36-37 0.006756418498130563 38-39 0.0027630751352359035 40-41 0.007644583465396744 42-43 0.008606134555540768 44-45 0.005994872405490098 46-47 0.002026602535955307 48-49 0.009490940204959546 50-51 0.004330454274439726 52-53 6.18012289545185E-6 54-55 4.873429841822837E-4 56-57 6.706856767670875E-4 58-59 3.785978020793361E-4 60-61 0.0010810185643448298 62-63 9.775656607075673E-4 64-65 0.0 66-67 1.7041712727575883E-4 68-69 6.100050110525283E-4 70-71 2.745527799208148E-4 72-73 6.203980017194295E-4 74-75 4.1139396731886327E-4 76-77 0.0 78-79 7.402880134933776E-6 80-81 3.22660160437137E-4 82-83 0.0018940726555621268 84-85 6.167773936282578E-5 86-87 5.864550465786056E-4 88-89 2.9376944386506584E-4 90-91 0.008308932069675846 92-93 8.220054812969504E-4 94-95 1.677425674945769E-5 96-97 1.6382235138704505E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 252.0 20-21 682.0 22-23 1461.0 24-25 2690.0 26-27 5012.0 28-29 12114.0 30-31 26898.0 32-33 34639.0 34-35 48471.0 36-37 72973.0 38-39 82329.0 40-41 82031.0 42-43 88336.0 44-45 101334.0 46-47 99473.0 48-49 93358.0 50-51 85058.0 52-53 85482.0 54-55 96636.0 56-57 108292.0 58-59 114205.0 60-61 110634.0 62-63 110105.0 64-65 119652.0 66-67 121444.0 68-69 117058.0 70-71 95107.0 72-73 83872.0 74-75 85721.0 76-77 86240.0 78-79 90549.0 80-81 91315.0 82-83 87477.0 84-85 89487.0 86-87 95199.0 88-89 103552.0 90-91 108427.0 92-93 115913.0 94-95 141593.0 96-97 322379.0 98-99 1818282.0 100-101 3712556.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.66237011782076 #Duplication Level Percentage of deduplicated Percentage of total 1 90.78406120827349 78.67561913230291 2 6.527159075147402 11.313181511766338 3 1.5398436308448455 4.003394959795349 4 0.5346333515190341 1.85330373546694 5 0.2390882918117286 1.0359979017912782 6 0.12911556507185423 0.6713676532937162 7 0.0722865133032657 0.438516439929007 8 0.04704511242576793 0.3261632756221111 9 0.028116706998937896 0.219299442159265 >10 0.09654825995931993 1.2737160047858884 >50 0.0017159548418654049 0.09965603451557618 >100 3.466742163297228E-4 0.05101852999930789 >500 1.9827794647322623E-5 0.015447729868334304 >1k 1.9827791576640656E-5 0.023317648704013226 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.3525966084238684E-5 2 0.0 1.117532202807956E-5 0.0 2.235064405615912E-5 3.3525966084238684E-5 3 0.0 1.117532202807956E-5 0.0 3.3525966084238684E-5 3.3525966084238684E-5 4 0.0 3.3525966084238684E-5 0.0 4.470128811231824E-5 3.3525966084238684E-5 5 1.117532202807956E-5 4.470128811231824E-5 0.0 4.470128811231824E-5 3.3525966084238684E-5 6 1.5645450839311387E-4 4.470128811231824E-5 0.0 4.470128811231824E-5 4.470128811231824E-5 7 1.5645450839311387E-4 4.470128811231824E-5 0.0 6.705193216847737E-5 4.470128811231824E-5 8 1.5645450839311387E-4 4.470128811231824E-5 0.0 7.822725419655693E-5 4.470128811231824E-5 9 1.5645450839311387E-4 1.1175322028079561E-4 0.0 1.2292854230887517E-4 8.940257622463648E-5 10-11 1.5645450839311387E-4 1.1175322028079561E-4 0.0 1.5086684737907407E-4 8.940257622463648E-5 12-13 1.5645450839311387E-4 1.1175322028079561E-4 0.0 1.6762983042119343E-4 8.940257622463648E-5 14-15 1.5645450839311387E-4 1.9556813549139232E-4 0.0 1.7880515244927297E-4 1.0057789825271605E-4 16-17 2.682077286739095E-4 2.011557965054321E-4 0.0 1.9556813549139232E-4 1.0057789825271605E-4 18-19 2.79383050701989E-4 2.1233111853351166E-4 0.0 2.570324066458299E-4 1.0057789825271605E-4 20-21 2.79383050701989E-4 2.3468176258967078E-4 0.0 2.9614603374410837E-4 1.0057789825271605E-4 22-23 2.905583727300686E-4 2.514447456317901E-4 0.0 3.2408433881430727E-4 1.0616555926675583E-4 24-25 3.240843388143073E-4 2.9614603374410837E-4 0.0 3.5202264388450616E-4 1.1175322028079561E-4 26-27 3.464349828704664E-4 3.2408433881430727E-4 0.0 4.58188203151262E-4 1.3410386433695474E-4 28-29 3.5761030489854593E-4 3.2408433881430727E-4 0.0 9.94603660499081E-4 1.3410386433695474E-4 30-31 3.7996094895470506E-4 3.464349828704664E-4 0.0 0.002391518914009026 1.3410386433695474E-4 32-33 3.7996094895470506E-4 3.5202264388450616E-4 0.0 0.005626774641138059 1.8998047447735253E-4 34-35 3.7996094895470506E-4 3.967239319968244E-4 0.0 0.009616364605162462 2.1233111853351166E-4 36-37 3.7996094895470506E-4 4.4701288112318244E-4 0.0 0.015477821008890193 2.2350644056159122E-4 38-39 3.7996094895470506E-4 4.5818820315126203E-4 0.0 0.024367789682227484 2.2350644056159122E-4 40-41 3.7996094895470506E-4 5.36415457347819E-4 0.0 0.033805349134940675 2.2350644056159122E-4 42-43 3.7996094895470506E-4 5.587661014039781E-4 0.0 0.04298028851999399 2.3468176258967078E-4 44-45 3.967239319968244E-4 6.314056945864952E-4 0.0 0.052870448514844404 2.3468176258967078E-4 46-47 4.134869150389438E-4 6.928699657409328E-4 0.0 0.06310145583155125 2.3468176258967078E-4 48-49 4.134869150389438E-4 6.928699657409328E-4 0.0 0.07316483331783688 2.3468176258967078E-4 50-51 4.6377586416530175E-4 8.102108470357681E-4 0.0 0.08299352904153286 2.4585708461775035E-4 52-53 4.805388472074211E-4 8.157985080498079E-4 0.0 0.09263783195176552 2.4585708461775035E-4 54-55 4.8612650822146093E-4 8.213861690638477E-4 0.0 0.10113107669310599 2.4585708461775035E-4 56-57 4.917141692355007E-4 8.269738300778876E-4 0.0 0.10935611370577256 2.4585708461775035E-4 58-59 4.917141692355007E-4 8.269738300778876E-4 0.0 0.11737440726091963 2.4585708461775035E-4 60-61 5.531784403899384E-4 8.269738300778876E-4 0.0 0.12473894447742406 2.4585708461775035E-4 62-63 6.034673895162963E-4 8.549121351480864E-4 0.0 0.1311368163384996 2.4585708461775035E-4 64-65 6.034673895162963E-4 9.610776944148422E-4 0.0 0.13808227897895106 2.4585708461775035E-4 66-67 6.202303725584156E-4 9.778406774569616E-4 0.0 0.14537417660227298 2.4585708461775035E-4 68-69 6.481686776286145E-4 0.0010113666435412002 0.0 0.15243139246300522 2.514447456317901E-4 70-71 6.761069826988135E-4 0.00101695430455524 0.0 0.1587510370698842 2.682077286739095E-4 72-73 7.934478639936488E-4 0.0010225419655692798 0.0 0.16354525021993033 2.682077286739095E-4 74-75 7.934478639936488E-4 0.001044892609625439 0.0 0.16726663245528084 2.682077286739095E-4 76-77 7.990355250076886E-4 0.0010895938977377572 0.0 0.1711947581481508 2.682077286739095E-4 78-79 8.046231860217284E-4 0.0011119445417939163 0.0 0.17329013102841573 2.682077286739095E-4 80-81 8.046231860217284E-4 0.0011342951858500754 0.0 0.17402211462125494 2.682077286739095E-4 82-83 8.046231860217284E-4 0.0011510581688921949 0.0 0.17461999434975717 2.7379538968794924E-4 84-85 8.102108470357681E-4 0.001173408812948354 0.0 0.17480997482423455 2.79383050701989E-4 86-87 8.269738300778876E-4 0.0012013471180185528 0.0 0.1749049650614732 2.79383050701989E-4 88 8.381491521059671E-4 0.0012404607451168314 0.0 0.17491614038350128 2.79383050701989E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12395 0.0 51.821877 1 GGTATCA 8430 0.0 41.675724 1 TATACAC 16380 0.0 40.68247 3 TTATACA 16600 0.0 39.333073 2 GTATCAA 14590 0.0 34.360012 1 TACACAT 22330 0.0 30.24386 5 TCAACGC 17155 0.0 28.581062 4 ATCAACG 17265 0.0 28.375359 3 ACACATC 22980 0.0 28.288774 6 CAACGCA 17520 0.0 27.962358 5 ACATCTC 23960 0.0 27.250793 8 AACGCAG 18100 0.0 27.178919 6 TATCAAC 18460 0.0 26.803432 2 ATACACA 27055 0.0 26.091787 4 CACATCT 25380 0.0 25.565536 7 CATCTCC 27630 0.0 23.30664 9 ACGCAGA 21365 0.0 22.93005 7 CGCAGAG 21930 0.0 22.320702 8 GTACATG 22535 0.0 21.160786 1 TACATGG 22345 0.0 20.702316 2 >>END_MODULE