##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140198_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7617378 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16291327540789 33.0 31.0 34.0 31.0 34.0 2 32.45981596292057 34.0 31.0 34.0 31.0 34.0 3 32.252835030636525 33.0 31.0 34.0 30.0 34.0 4 36.073415944436526 37.0 35.0 37.0 35.0 37.0 5 35.91082180771389 37.0 35.0 37.0 35.0 37.0 6 36.005232246581436 37.0 35.0 37.0 35.0 37.0 7 35.96613335979913 37.0 35.0 37.0 35.0 37.0 8 35.94376424538732 37.0 35.0 37.0 35.0 37.0 9 37.73490681439204 39.0 37.0 39.0 35.0 39.0 10-11 37.65917110848379 39.0 37.0 39.0 35.0 39.0 12-13 37.629874741676204 39.0 37.0 39.0 35.0 39.0 14-15 38.954047705128986 40.0 38.0 41.0 35.5 41.0 16-17 38.922676936867255 40.0 38.0 41.0 35.0 41.0 18-19 38.895446897869576 40.0 38.0 41.0 35.0 41.0 20-21 38.87826817138338 40.0 38.0 41.0 35.0 41.0 22-23 38.78272116201506 40.0 38.0 41.0 34.5 41.0 24-25 38.7107786247882 40.0 38.0 41.0 34.0 41.0 26-27 38.54247603588526 40.0 38.0 41.0 34.0 41.0 28-29 38.40676089090515 40.0 38.0 41.0 34.0 41.0 30-31 38.257507775391645 40.0 38.0 41.0 34.0 41.0 32-33 38.10981348992675 40.0 38.0 41.0 33.5 41.0 34-35 38.22057742823953 40.0 38.0 41.0 34.0 41.0 36-37 38.20316898562319 40.0 38.0 41.0 33.0 41.0 38-39 38.11532643709824 40.0 38.0 41.0 33.0 41.0 40-41 38.12892023261544 40.0 38.0 41.0 33.0 41.0 42-43 38.22752160739007 40.0 38.0 41.0 33.0 41.0 44-45 38.196259590788756 40.0 38.0 41.0 33.0 41.0 46-47 38.114218965373155 40.0 37.5 41.0 33.0 41.0 48-49 38.017949566768195 40.0 37.0 41.0 33.0 41.0 50-51 37.854734345815444 40.0 37.0 41.0 33.0 41.0 52-53 37.71966706693662 40.0 37.0 41.0 33.0 41.0 54-55 37.53742601997601 39.0 36.0 41.0 32.0 41.0 56-57 37.3888514456885 39.0 36.0 41.0 32.0 41.0 58-59 37.19041924473916 39.0 35.0 41.0 31.5 41.0 60-61 36.97941299085038 39.0 35.0 40.5 31.0 41.0 62-63 36.726121285097705 38.0 35.0 40.0 31.0 41.0 64-65 36.453748708608515 38.0 35.0 40.0 31.0 41.0 66-67 36.18226890150497 37.0 35.0 40.0 31.0 41.0 68-69 35.92442696023117 37.0 34.5 39.5 30.0 41.0 70-71 35.634071231242885 36.0 34.0 39.0 30.0 41.0 72-73 35.183072056548575 36.0 34.0 39.0 30.0 40.0 74-75 34.94794086525221 35.0 34.0 38.5 30.0 40.0 76-77 33.719139170366674 34.5 32.5 36.5 28.5 39.0 78-79 34.4303400184111 35.0 34.0 37.0 30.0 39.0 80-81 34.34902982184106 35.0 34.0 36.5 30.0 39.0 82-83 34.11816757804337 35.0 34.0 36.0 30.0 37.5 84-85 33.903779375007105 35.0 34.0 36.0 30.0 37.0 86-87 33.720494029652386 35.0 34.0 35.0 29.5 37.0 88-89 33.549124319547 35.0 33.0 35.0 29.0 36.0 90-91 33.40548939004146 35.0 33.0 35.0 29.0 36.0 92-93 33.322333797752236 35.0 33.0 35.0 29.0 36.0 94-95 33.28425090563208 35.0 33.0 35.0 29.0 35.5 96-97 33.33208433958387 35.0 33.0 35.0 29.5 35.0 98-99 33.41967231661674 35.0 33.0 35.0 30.0 35.0 100 32.24379688151883 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 11.0 20 30.0 21 272.0 22 1202.0 23 3894.0 24 9887.0 25 20949.0 26 37605.0 27 59262.0 28 84032.0 29 111043.0 30 142369.0 31 177510.0 32 220303.0 33 281701.0 34 381116.0 35 535741.0 36 848099.0 37 1506385.0 38 1979469.0 39 1164868.0 40 51628.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.07844956624182 20.617566832051658 13.969413097262601 25.334570504443914 2 14.607611700509022 20.70922566793981 40.91054690997348 23.772615721577687 3 17.65692867020647 25.789333285022746 31.48844654945573 25.065291495315055 4 12.420599319083285 18.362840862039405 36.84141708603669 32.375142732840615 5 13.102986355672517 37.43526972141858 35.84816192658419 13.613581996324719 6 30.35098166324423 37.20176417659725 18.18361908782786 14.263635072330663 7 26.333273732772618 32.38040701144147 21.985412828403682 19.30090642738223 8 24.92928669156237 36.10363040930882 21.369321569705484 17.597761329423324 9 24.765266998696926 16.354590779136863 20.39041517960642 38.48972704255979 10-11 24.216088528099828 26.18307769418821 28.566522496323536 21.034311281388426 12-13 24.88604346534989 23.469348639387462 28.365830079589067 23.278777815673582 14-15 22.230234603035324 25.321987434521432 25.164288814340054 27.28348914810319 16-17 22.52372798094042 28.886717975660392 25.9176320250879 22.67192201831129 18-19 22.850356119914228 27.37008062354264 27.28879937427288 22.49076388227025 20-21 23.09328138076749 26.82996941651109 27.118309833081728 22.95843936963969 22-23 22.48817180991414 27.397907161895485 27.271148065955437 22.842772962234942 24-25 22.87167414406135 27.170396871445107 27.32397216575836 22.633956818735186 26-27 22.90437416100857 27.478349159195243 27.433324818588634 22.18395186120756 28-29 22.23479221449866 26.8464413752007 27.7578396102449 23.160926800055737 30-31 22.443567272082564 26.93234927160934 28.04823071229574 22.575852744012355 32-33 21.739827103598248 26.596380779614975 28.752048406229143 22.911743710557637 34-35 21.817535249895286 26.949307722491078 28.117556149114968 23.115600878498665 36-37 22.20756611527726 27.070986294586007 28.210457854726474 22.510989735410263 38-39 22.260526543669307 26.671529671018025 28.07281425975146 22.995129525561207 40-41 22.265844294243482 26.46682308250783 28.477621719550715 22.789710903697976 42-43 22.71773887406447 26.31117151716169 28.536656497391178 22.434433111382663 44-45 22.037135439342276 27.04251372571806 28.207343606534003 22.71300722840566 46-47 23.07163320844936 26.226652595981598 27.261216706109952 23.44049748945909 48-49 22.58019601404945 26.265775799141505 27.78541484607099 23.36861334073806 50-51 22.156631365524763 26.797584004979285 28.135774462673492 22.910010166822463 52-53 22.252318804284428 27.20835233699302 28.479927582638993 22.059401276083566 54-55 22.149229415623424 27.327822600247387 27.578849936052208 22.944098048076974 56-57 22.82033040625375 27.983714031501194 26.69030177053703 22.505653791708028 58-59 21.79859696033423 28.61256173549913 27.856859161035114 21.731982143131525 60-61 22.65922424987471 29.128067238058847 26.407756314643045 21.804952197423397 62-63 22.031546709256023 29.628745977334077 26.385634617725973 21.954072695683926 64-65 22.132066704799445 29.129672624974923 26.577220396636235 22.161040273589396 66-67 22.356665325111667 28.536757360434926 26.691344667554183 22.415232646899224 68-69 22.448220557302857 27.979787446770644 27.02165044160524 22.550341554321257 70-71 22.56812173934673 27.418985854613247 27.147833681656014 22.865058724384006 72-73 22.71654243198559 27.40412316437067 27.093835120558435 22.785499283085304 74-75 22.516390203073154 27.5486762395755 27.1086962777845 22.826237279566847 76-77 22.613755934613575 27.47815922127506 27.060473754673005 22.84761108943836 78-79 22.577979445181835 27.465704865100115 27.049916121848316 22.906399567869727 80-81 22.51737171412088 27.515790342517814 27.123559188203433 22.843278755157872 82-83 22.63098401397511 27.48770423858382 27.205513827742678 22.675797919698393 84-85 22.783497258131664 27.463715266679245 27.05002798779452 22.702759487394577 86-87 22.552876271263493 27.48237903330044 27.17644678231833 22.788297913117734 88-89 22.59765422637163 27.4207596894287 27.172559858832695 22.809026225366978 90-91 22.642703473456628 27.478863195031266 27.155726111538574 22.722707219973536 92-93 22.687315400343966 27.43863208597965 27.20241574515866 22.671636768517725 94-95 22.479763264663017 27.524400540502587 27.260196934069302 22.735639260765094 96-97 22.567083450910513 27.629548198416437 27.329777351335157 22.473590999337894 98-99 23.646078332603583 29.64014894664037 27.464870252907055 19.248902467848993 100 30.417811385035655 41.173957375794814 28.408231239169535 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1280.0 1 1172.0 2 1673.0 3 2446.5 4 3130.5 5 4821.5 6 6415.0 7 7490.0 8 8216.5 9 8155.0 10 7649.5 11 7080.5 12 7410.0 13 9368.5 14 14096.0 15 20641.0 16 26331.0 17 30147.0 18 31961.0 19 32088.0 20 31184.0 21 30274.5 22 30818.0 23 34234.5 24 40599.0 25 50010.0 26 62858.0 27 76849.0 28 91653.0 29 108440.5 30 124771.5 31 140924.0 32 157318.0 33 173592.5 34 190367.0 35 207757.5 36 227393.5 37 245456.0 38 258388.0 39 267561.0 40 277462.0 41 288539.5 42 298452.5 43 307958.5 44 318162.5 45 331729.5 46 358098.0 47 387484.5 48 411515.0 49 413880.5 50 392978.0 51 372720.5 52 351393.0 53 326791.0 54 299804.0 55 274488.5 56 252795.0 57 231716.0 58 208146.5 59 180152.0 60 152278.5 61 127172.0 62 103154.5 63 80993.0 64 62235.0 65 48654.5 66 37666.5 67 28929.5 68 22168.0 69 16646.0 70 12431.5 71 9086.0 72 6467.5 73 4427.0 74 3069.5 75 2140.5 76 1427.5 77 955.0 78 650.5 79 427.5 80 286.0 81 190.0 82 131.0 83 93.0 84 62.5 85 41.0 86 29.5 87 22.0 88 13.5 89 5.5 90 3.5 91 2.5 92 1.5 93 1.5 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005179145935860512 22-23 0.004687267052182346 24-25 0.0036245292380005095 26-27 0.016928073031530162 28-29 0.021097265560334564 30-31 0.038515420926246456 32-33 0.023903659389653723 34-35 0.012545936944799075 36-37 0.007368823552582183 38-39 0.002924758357073863 40-41 0.007874498839504293 42-43 0.009531055448023332 44-45 0.00577514882586593 46-47 0.0022068011904197494 48-49 0.010277406990008037 50-51 0.004745364404136875 52-53 7.402820948561943E-6 54-55 5.551513620188545E-4 56-57 6.858807261038202E-4 58-59 5.354610641815272E-4 60-61 0.0011549535522771925 62-63 0.001103881715448301 64-65 0.0 66-67 2.2690688766613157E-4 68-69 7.129264298577025E-4 70-71 4.116444222487329E-4 72-73 7.559050860673531E-4 74-75 4.420438955001014E-4 76-77 0.0 78-79 9.295522123900386E-6 80-81 4.1552738972398877E-4 82-83 0.0024272410510356693 84-85 9.745052850832378E-6 86-87 6.536971177602672E-4 88-89 3.1244094488188973E-4 90-91 0.008677445388831194 92-93 8.588087965899845E-4 94-95 3.2111597649388235E-5 96-97 2.754631527264682E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 194.0 20-21 561.0 22-23 1221.0 24-25 2835.0 26-27 4999.0 28-29 11950.0 30-31 27959.0 32-33 36445.0 34-35 49678.0 36-37 75025.0 38-39 83626.0 40-41 83215.0 42-43 89365.0 44-45 101240.0 46-47 98234.0 48-49 91247.0 50-51 84286.0 52-53 86691.0 54-55 99466.0 56-57 114562.0 58-59 123199.0 60-61 117850.0 62-63 120341.0 64-65 129877.0 66-67 128793.0 68-69 121146.0 70-71 91099.0 72-73 79713.0 74-75 81043.0 76-77 81397.0 78-79 84794.0 80-81 83603.0 82-83 80610.0 84-85 81695.0 86-87 86142.0 88-89 90537.0 90-91 94733.0 92-93 98809.0 94-95 118002.0 96-97 256920.0 98-99 1436011.0 100-101 2888265.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.23938371066956 #Duplication Level Percentage of deduplicated Percentage of total 1 90.96197003809905 79.35466207232152 2 6.532317197086339 11.397506529528412 3 1.4494703575797023 3.7935270210641114 4 0.5025604849595647 1.7537226794083063 5 0.22279153834278592 0.9718098250488326 6 0.11348473758738507 0.5940203140614319 7 0.06835887578990384 0.4174510336545795 8 0.03843398115946018 0.2682365463919033 9 0.026692528033654104 0.20957757258021795 >10 0.08216945720974164 1.1047126609537494 >50 0.0014138621900364628 0.07892892054219683 >100 3.3694196235281473E-4 0.055844824444752125 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3127876810104474E-5 0.0 0.0 0.0 3 0.0 1.3127876810104474E-5 0.0 0.0 0.0 4 0.0 5.2511507240417894E-5 0.0 1.3127876810104474E-5 2.6255753620208947E-5 5 0.0 6.563938405052237E-5 0.0 2.6255753620208947E-5 2.6255753620208947E-5 6 5.2511507240417894E-5 6.563938405052237E-5 0.0 2.6255753620208947E-5 2.6255753620208947E-5 7 5.2511507240417894E-5 9.189513767073131E-5 0.0 3.938363043031342E-5 2.6255753620208947E-5 8 5.2511507240417894E-5 1.3127876810104474E-4 0.0 3.938363043031342E-5 3.938363043031342E-5 9 5.2511507240417894E-5 2.2317390577177606E-4 0.0 3.938363043031342E-5 3.938363043031342E-5 10-11 5.2511507240417894E-5 2.2317390577177606E-4 0.0 3.938363043031342E-5 3.938363043031342E-5 12-13 5.2511507240417894E-5 2.2317390577177606E-4 0.0 3.938363043031342E-5 3.938363043031342E-5 14-15 5.2511507240417894E-5 3.2819692025261185E-4 0.0 5.907544564547013E-5 5.2511507240417894E-5 16-17 5.2511507240417894E-5 3.4132479706271634E-4 0.0 6.563938405052237E-5 6.563938405052237E-5 18-19 5.2511507240417894E-5 3.675805506829253E-4 0.0 7.876726086062684E-5 7.876726086062684E-5 20-21 5.2511507240417894E-5 4.069641811132387E-4 0.0 1.247148296959925E-4 7.876726086062684E-5 22-23 5.2511507240417894E-5 4.397838731384999E-4 0.0 1.444066449111492E-4 9.189513767073131E-5 24-25 5.2511507240417894E-5 5.119871955940745E-4 0.0 2.6255753620208947E-4 1.1815089129094026E-4 26-27 5.2511507240417894E-5 5.448068876193357E-4 0.0 2.888132898222984E-4 1.1815089129094026E-4 28-29 5.2511507240417894E-5 5.513708260243879E-4 0.0 8.730038078719475E-4 1.1815089129094026E-4 30-31 5.907544564547013E-5 6.301380868850147E-4 0.0 0.0028028016989573054 1.247148296959925E-4 32-33 7.876726086062684E-5 6.563938405052237E-4 0.0 0.00668865323474823 1.4440664491114922E-4 34-35 1.0502301448083579E-4 7.614168549860595E-4 0.0 0.011513147962461624 1.5753452172125368E-4 36-37 1.0502301448083579E-4 8.664398694668953E-4 0.0 0.019343926479688946 1.6409846012630593E-4 38-39 1.0502301448083579E-4 9.058234998972087E-4 0.0 0.030843946565340463 1.7066239853135817E-4 40-41 1.0502301448083579E-4 9.977186375679402E-4 0.0 0.04332855741174982 1.7066239853135817E-4 42-43 1.0502301448083579E-4 0.0010239743911881491 0.0 0.05449381663874367 1.7066239853135817E-4 44-45 1.0502301448083579E-4 0.0012012007281245593 0.0 0.06734600803583596 1.7066239853135817E-4 46-47 1.0502301448083579E-4 0.0013652991882508654 0.0 0.08071675056692736 1.7066239853135817E-4 48-49 1.0502301448083579E-4 0.0013718631266559176 0.0 0.09329982048941249 1.8379027534146263E-4 50-51 1.1815089129094026E-4 0.0015556534019973802 0.0 0.10497706691200043 1.8379027534146263E-4 52-53 1.1815089129094026E-4 0.0015622173404024324 0.0 0.11635237216795596 1.8379027534146263E-4 54-55 1.1815089129094026E-4 0.0015687812788074847 0.0 0.12732071324279826 1.9035421374651487E-4 56-57 1.1815089129094026E-4 0.0015884730940226414 0.0 0.13773768349161614 1.9691815215156712E-4 58-59 1.1815089129094026E-4 0.0015884730940226414 0.0 0.14763610260643492 2.1004602896167158E-4 60-61 1.1815089129094026E-4 0.0016147288476428504 0.0 0.15681248849669793 2.1004602896167158E-4 62-63 1.3127876810104474E-4 0.0016212927860479026 0.0 0.16504366725663344 2.1004602896167158E-4 64-65 1.3127876810104474E-4 0.0017853912461742085 0.0 0.17372119382811252 2.1004602896167158E-4 66-67 1.3127876810104474E-4 0.0018116469997944175 0.0 0.18265471399738858 2.1660996736672382E-4 68-69 1.3127876810104474E-4 0.001824774876604522 0.0 0.1914635193369687 2.2317390577177606E-4 70-71 1.444066449111492E-4 0.0018379027534146265 0.0 0.19784366746667947 2.2317390577177606E-4 72-73 1.7066239853135817E-4 0.0018379027534146265 0.0 0.20359367750950524 2.4942965939198504E-4 74-75 1.7066239853135817E-4 0.0018904142606550444 0.0 0.2082868934691176 2.4942965939198504E-4 76-77 1.7066239853135817E-4 0.0019494897063005146 0.0 0.2127241158309329 2.559935977970373E-4 78-79 1.7066239853135817E-4 0.0019954372751358803 0.0 0.21530374362411842 2.6255753620208947E-4 80-81 1.7066239853135817E-4 0.002028256967161141 0.0 0.21619643924720555 2.822493514172462E-4 82-83 1.7066239853135817E-4 0.002047948782376298 0.0 0.21682657733409055 3.0194116663240293E-4 84-85 1.7066239853135817E-4 0.002107024228021768 0.0 0.21703005942464715 3.085051050374551E-4 86-87 1.7066239853135817E-4 0.0021398439200470292 0.0 0.21711539062391283 3.1506904344250736E-4 88 1.7066239853135817E-4 0.002297378441768283 0.0 0.2171219545623179 3.1506904344250736E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 14695 0.0 56.967293 1 TATACAC 18185 0.0 47.147537 3 TTATACA 18360 0.0 46.136036 2 GGTATCA 6755 0.0 40.604225 1 TACACAT 25300 0.0 34.01397 5 GTATCAA 11800 0.0 33.436665 1 ATACACA 27790 0.0 31.637615 4 ACACATC 28475 0.0 29.594076 6 ACATCTC 29420 0.0 28.60301 8 ATCAACG 14015 0.0 27.38747 3 TCAACGC 14065 0.0 27.31833 4 CACATCT 30970 0.0 27.068941 7 CAACGCA 14400 0.0 26.600107 5 TATCAAC 14975 0.0 26.029343 2 AACGCAG 14875 0.0 25.830748 6 CATCTCC 34015 0.0 24.610739 9 ACGCAGA 17720 0.0 21.68354 7 CGCAGAG 17930 0.0 21.385302 8 GTACATG 19390 0.0 21.310394 1 TACATGG 19035 0.0 21.165655 2 >>END_MODULE