##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140197_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6914805 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19623329942059 33.0 31.0 34.0 31.0 34.0 2 32.48219450873886 34.0 31.0 34.0 31.0 34.0 3 32.2819937800126 33.0 31.0 34.0 30.0 34.0 4 36.09107964722071 37.0 35.0 37.0 35.0 37.0 5 35.93384527835565 37.0 35.0 37.0 35.0 37.0 6 36.028809344587444 37.0 35.0 37.0 35.0 37.0 7 35.995297336656634 37.0 35.0 37.0 35.0 37.0 8 35.9738433694081 37.0 35.0 37.0 35.0 37.0 9 37.76678590357935 39.0 38.0 39.0 35.0 39.0 10-11 37.69474301878361 39.0 37.0 39.0 35.0 39.0 12-13 37.668400338115106 39.0 37.0 39.0 35.0 39.0 14-15 39.005664006432575 40.0 38.0 41.0 35.5 41.0 16-17 38.98559872621137 40.0 38.0 41.0 35.5 41.0 18-19 38.95685988252742 40.0 38.0 41.0 35.0 41.0 20-21 38.952026936103465 40.0 38.0 41.0 35.0 41.0 22-23 38.86369580865033 40.0 38.0 41.0 35.0 41.0 24-25 38.80104697918398 40.0 38.0 41.0 35.0 41.0 26-27 38.65645398574812 40.0 38.0 41.0 34.0 41.0 28-29 38.53839367588526 40.0 38.0 41.0 34.0 41.0 30-31 38.39395692070087 40.0 38.0 41.0 34.0 41.0 32-33 38.2462384830291 40.0 38.0 41.0 34.0 41.0 34-35 38.3430672369891 40.0 38.0 41.0 34.0 41.0 36-37 38.33662172656521 40.0 38.0 41.0 34.0 41.0 38-39 38.27022547068633 40.0 38.0 41.0 34.0 41.0 40-41 38.26352546038244 40.0 38.0 41.0 33.5 41.0 42-43 38.3438549334167 40.0 38.0 41.0 34.0 41.0 44-45 38.30993152525434 40.0 38.0 41.0 33.5 41.0 46-47 38.23629000187864 40.0 38.0 41.0 33.0 41.0 48-49 38.14731733429586 40.0 37.5 41.0 33.0 41.0 50-51 38.03534380888961 40.0 37.0 41.0 33.0 41.0 52-53 37.89544981382821 40.0 37.0 41.0 33.0 41.0 54-55 37.739173821463005 40.0 37.0 41.0 33.0 41.0 56-57 37.62732390550759 39.5 36.0 41.0 33.0 41.0 58-59 37.428401858023975 39.0 36.0 41.0 32.0 41.0 60-61 37.23002986207616 39.0 35.5 41.0 32.0 41.0 62-63 36.976849493169496 39.0 35.0 40.5 31.0 41.0 64-65 36.681431726883176 38.0 35.0 40.0 31.0 41.0 66-67 36.39966782383344 37.5 35.0 40.0 31.0 41.0 68-69 36.125369566721346 37.0 35.0 40.0 31.0 41.0 70-71 35.82110775288694 36.5 34.5 39.0 30.5 41.0 72-73 35.36242860463537 36.0 34.0 39.0 30.0 40.5 74-75 35.11972484120151 35.5 34.0 38.5 30.0 40.0 76-77 33.87055118048575 34.5 32.5 36.5 28.5 39.0 78-79 34.56966808948117 35.0 34.0 37.0 30.0 39.0 80-81 34.4734924703494 35.0 34.0 37.0 30.0 39.0 82-83 34.227534508723096 35.0 34.0 36.0 30.0 38.5 84-85 34.00458911436478 35.0 34.0 36.0 30.0 37.0 86-87 33.81453970108299 35.0 34.0 35.5 30.0 37.0 88-89 33.63601119561056 35.0 34.0 35.0 30.0 36.5 90-91 33.484765597335034 35.0 33.0 35.0 29.5 36.0 92-93 33.39778204626982 35.0 33.0 35.0 29.0 36.0 94-95 33.35536812351238 35.0 33.0 35.0 29.0 36.0 96-97 33.39575608401696 35.0 33.0 35.0 30.0 35.0 98-99 33.47641826107948 35.0 33.0 35.0 30.0 35.0 100 32.32569164679576 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 4.0 20 33.0 21 202.0 22 963.0 23 3072.0 24 7962.0 25 17220.0 26 30630.0 27 48569.0 28 70332.0 29 94931.0 30 121378.0 31 153274.0 32 192328.0 33 245759.0 34 332484.0 35 467721.0 36 741837.0 37 1343975.0 38 1824783.0 39 1164058.0 40 53288.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.28746942249275 20.386099101854644 13.801083327729415 24.525348147923186 2 14.95083375453104 21.12110175196553 40.62224458968836 23.305819903815074 3 18.122000548099333 25.68940121955717 30.7968915970877 25.3917066352558 4 12.679027101993476 17.852781097948533 38.28609772799088 31.182094072067105 5 13.219505105350043 37.65471332886466 35.85774291538228 13.268038650403014 6 30.509956535289135 37.617431004923496 18.41592062249044 13.45669183729693 7 26.727868681763262 32.40024845241478 22.88666130136714 17.985221564454818 8 24.668605983827455 36.44331257352882 21.306327510320248 17.581753932323473 9 25.276287617655164 16.6658495792723 21.21383032493324 36.8440324781393 10-11 24.325863129907496 26.58574609117683 28.897987723442668 20.190403055473002 12-13 24.861243375626643 24.002860528966472 28.914654860115363 22.221241235291522 14-15 22.059407315173747 25.626507182776663 26.230313074627553 26.08377242742203 16-17 21.9427735127744 28.797746284963928 27.065181158398538 22.19429904386313 18-19 22.028994310034776 27.978431785133495 28.463412923430237 21.5291609814015 20-21 22.669567655350164 27.29153048847556 28.237888014287133 21.801013841887148 22-23 22.29966411711575 27.361021342011338 28.12118571727879 22.218128823594117 24-25 22.229168035012684 27.359489068518762 28.268659152072022 22.142683744396532 26-27 22.237734726337063 27.5499733056429 28.196492758798303 22.015799209221736 28-29 22.042270110080132 27.5838277358355 28.22483907531762 22.14906307876675 30-31 22.305923688648456 27.43528417835358 28.243124258196623 22.01566787480134 32-33 21.938977525862168 27.46872922570939 28.34614050126541 22.246152747163034 34-35 22.068239394143465 27.52105518825882 28.23486254505676 22.175842872540954 36-37 22.138188091603507 27.545243797694773 28.24277188559089 22.073796225110833 38-39 21.99949487564636 27.591544080911902 28.254590739496376 22.154370303945363 40-41 22.243425180740356 27.399039427375005 28.23059547612105 22.12693991576359 42-43 22.272031867291435 27.431017909131334 28.08354024160602 22.213409981971207 44-45 22.142108575227535 27.717679183937065 27.89838477267063 22.241827468164765 46-47 22.430891205930216 27.43671311939675 27.569490700884046 22.56290497378899 48-49 22.252753706566946 27.558376182086224 27.702427896236102 22.486442215110728 50-51 22.157156746904068 27.65284140961313 27.798044029108237 22.391957814374567 52-53 22.331870199476633 27.690988361169193 27.732996914832746 22.244144524521424 54-55 22.284033429941875 27.597123347897103 27.607534551349893 22.511308670811133 56-57 22.470211999993925 27.868052286659488 27.321744155607647 22.33999155773894 58-59 22.14022861035964 28.07127915289286 27.697732813612713 22.090759423134788 60-61 22.443678186110674 28.14692226623453 27.285664365282585 22.123735182372208 62-63 22.296197261488825 28.340487434442313 27.22559857822942 22.13771672583944 64-65 22.258437292341497 28.17952358910961 27.272424205627114 22.289614912921778 66-67 22.38721640091116 28.073530751708432 27.179927107061502 22.359325740318905 68-69 22.316446557807428 27.941484028189034 27.3804684402323 22.361600973771242 70-71 22.31845988514328 27.572525211962436 27.484356448548645 22.624658454345635 72-73 22.42190022014129 27.632019052846623 27.383381469225387 22.5626992577867 74-75 22.27547249676667 27.811755138748488 27.360398440087042 22.552373924397802 76-77 22.36978102079078 27.746384232764225 27.28595797408901 22.59787677235599 78-79 22.29871615161962 27.76959025557939 27.29277572472908 22.63891786807191 80-81 22.323545606246388 27.768611069351852 27.30087007326692 22.606973251134843 82-83 22.39631249775992 27.743866256361187 27.445639739930527 22.414181505948367 84-85 22.505102965370348 27.719754889775633 27.299902006695948 22.475240138158075 86-87 22.30032113865681 27.74649091014039 27.401826198039025 22.551361753163775 88-89 22.361291454869846 27.765580288896587 27.341034548820097 22.532093707413473 90-91 22.36034477147588 27.79107333843558 27.39028413560173 22.458297754486807 92-93 22.445941416538602 27.720365331836234 27.41402178746536 22.419671464159805 94-95 22.246643957068773 27.83428509249636 27.477336462105278 22.44173448832959 96-97 22.275798943552587 27.970695552953938 27.525367270800626 22.22813823269285 98-99 23.3421822272216 29.901944865587453 27.746518641691527 19.00935426549942 100 29.880143627237217 41.503149964278755 28.616706408484028 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1071.0 1 1041.5 2 1554.5 3 2230.5 4 2930.5 5 4655.0 6 6176.5 7 7079.0 8 7578.5 9 7455.0 10 6944.0 11 6422.5 12 6924.5 13 8893.5 14 13456.5 15 19695.0 16 25183.0 17 28975.0 18 30579.0 19 30537.0 20 29968.0 21 29573.0 22 30444.5 23 33735.5 24 39865.0 25 49230.0 26 62783.5 27 77655.0 28 92426.5 29 109420.5 30 125139.5 31 139907.5 32 156502.0 33 173250.0 34 189768.5 35 206414.0 36 225026.5 37 240446.5 38 250345.5 39 259892.0 40 271666.5 41 283981.0 42 291925.5 43 298011.5 44 305134.5 45 311514.5 46 319275.5 47 326721.5 48 331162.0 49 327751.0 50 317735.5 51 307117.0 52 292513.5 53 274291.5 54 256255.0 55 237967.5 56 219212.5 57 199809.5 58 178495.5 59 154619.0 60 130218.5 61 107034.0 62 85520.5 63 67134.5 64 51357.5 65 39200.5 66 30075.0 67 23018.0 68 17479.0 69 12969.5 70 9442.0 71 6815.5 72 4855.0 73 3381.5 74 2365.5 75 1655.5 76 1127.0 77 740.5 78 479.0 79 311.0 80 209.0 81 138.0 82 94.5 83 68.5 84 50.0 85 36.5 86 28.0 87 20.0 88 15.5 89 14.5 90 11.0 91 8.0 92 6.0 93 3.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.004902716864413196 22-23 0.004584974806141986 24-25 0.0036455748941408954 26-27 0.01663552059193799 28-29 0.021002141059649267 30-31 0.038799947947394935 32-33 0.023633369268006122 34-35 0.012646425791088519 36-37 0.007096707445287967 38-39 0.002441922385849276 40-41 0.007270352831280958 42-43 0.008889660040121285 44-45 0.005545663849314308 46-47 0.001866190223840462 48-49 0.009419845385102694 50-51 0.004146854367982137 52-53 2.4614380853556166E-5 54-55 3.575720029437323E-4 56-57 5.99157281064765E-4 58-59 3.5983692190699176E-4 60-61 8.348992041845147E-4 62-63 8.914230014847929E-4 64-65 0.0 66-67 2.2778991391819153E-4 68-69 4.7257630439399595E-4 70-71 2.2602494543145664E-4 72-73 7.456204121044017E-4 74-75 3.6857977676480846E-4 76-77 0.0 78-79 0.0 80-81 4.5740158090183734E-4 82-83 0.0025718315654831695 84-85 6.295743164737878E-5 86-87 5.654756824117858E-4 88-89 2.280688702825719E-4 90-91 0.009673706114136451 92-93 0.0010837507937627884 94-95 3.461710481920871E-5 96-97 2.851081254746605E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 184.0 20-21 511.0 22-23 1154.0 24-25 2206.0 26-27 4599.0 28-29 10687.0 30-31 26733.0 32-33 34248.0 34-35 47114.0 36-37 71415.0 38-39 80114.0 40-41 79682.0 42-43 85927.0 44-45 96245.0 46-47 93779.0 48-49 86815.0 50-51 79904.0 52-53 79498.0 54-55 86637.0 56-57 89249.0 58-59 87225.0 60-61 85212.0 62-63 84738.0 64-65 90178.0 66-67 91719.0 68-69 89178.0 70-71 80515.0 72-73 75433.0 74-75 77672.0 76-77 77588.0 78-79 79700.0 80-81 79026.0 82-83 75608.0 84-85 77817.0 86-87 81458.0 88-89 85504.0 90-91 88118.0 92-93 92315.0 94-95 110094.0 96-97 235233.0 98-99 1319298.0 100-101 2694475.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.96107459107097 #Duplication Level Percentage of deduplicated Percentage of total 1 91.01622580147902 79.14868800920176 2 6.288464250578076 10.937032175156066 3 1.539088766864356 4.015224391727122 4 0.544652880410298 1.8945439903840635 5 0.25682380880292205 1.116683719703693 6 0.12071803201699788 0.6298661872030469 7 0.07047708185216661 0.42901339403350924 8 0.04478355918579904 0.3115541144647929 9 0.03000130718131278 0.23480513204613965 >10 0.08721726059300768 1.1070078305884266 >50 0.0011126199410614835 0.06399575985969647 >100 3.6044319436254066E-4 0.05651146576206178 >500 4.945875195089935E-5 0.02298876760285168 >1k 2.4729148672422277E-5 0.03208506226676086 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4461723794091085E-5 0.0 2.892344758818217E-5 0.0 3 0.0 1.4461723794091085E-5 0.0 2.892344758818217E-5 0.0 4 0.0 2.892344758818217E-5 0.0 2.892344758818217E-5 0.0 5 0.0 4.3385171382273254E-5 0.0 2.892344758818217E-5 0.0 6 8.677034276454651E-5 4.3385171382273254E-5 0.0 2.892344758818217E-5 0.0 7 8.677034276454651E-5 4.3385171382273254E-5 0.0 2.892344758818217E-5 0.0 8 8.677034276454651E-5 5.784689517636434E-5 0.0 2.892344758818217E-5 0.0 9 8.677034276454651E-5 1.1569379035272868E-4 0.0 8.677034276454651E-5 0.0 10-11 8.677034276454651E-5 1.1569379035272868E-4 0.0 8.677034276454651E-5 0.0 12-13 8.677034276454651E-5 1.1569379035272868E-4 0.0 1.1569379035272868E-4 0.0 14-15 1.0123206655863758E-4 1.3015551414681975E-4 0.0 1.2292465224977421E-4 0.0 16-17 1.880024093231841E-4 1.3015551414681975E-4 0.0 1.6630982363204745E-4 0.0 18-19 1.880024093231841E-4 1.5184809983795637E-4 0.0 1.880024093231841E-4 7.230861897045542E-6 20-21 1.880024093231841E-4 1.5907896173500194E-4 0.0 1.880024093231841E-4 1.4461723794091085E-5 22-23 2.0246413311727517E-4 2.0969499501432074E-4 0.0 2.3138758070545735E-4 1.4461723794091085E-5 24-25 2.0246413311727517E-4 2.386184426025029E-4 0.0 2.820036139847762E-4 1.4461723794091085E-5 26-27 2.0246413311727517E-4 2.603110282936395E-4 0.0 3.832356805434137E-4 1.4461723794091085E-5 28-29 2.1692585691136627E-4 2.603110282936395E-4 0.0 9.400120466159204E-4 1.4461723794091085E-5 30-31 2.1692585691136627E-4 2.603110282936395E-4 0.0 0.0032321952679793572 1.4461723794091085E-5 32-33 2.241567188084118E-4 2.603110282936395E-4 0.0 0.007700867920353502 1.4461723794091085E-5 34-35 2.3138758070545735E-4 3.253887853670494E-4 0.0 0.013731406742489485 1.4461723794091085E-5 36-37 2.4584930449954843E-4 3.9046654244045926E-4 0.0 0.022314439814282543 1.4461723794091085E-5 38-39 2.4584930449954843E-4 4.0492826623455034E-4 0.0 0.0355975331191552 1.4461723794091085E-5 40-41 2.4584930449954843E-4 4.0492826623455034E-4 0.0 0.04847569815779332 1.4461723794091085E-5 42-43 2.4584930449954843E-4 4.2662085192568696E-4 0.0 0.06133217061074029 1.4461723794091085E-5 44-45 2.5308016639659397E-4 4.772368852050058E-4 0.0 0.07498403787236227 1.4461723794091085E-5 46-47 2.603110282936395E-4 5.061603327931879E-4 0.0 0.08977838131371746 1.4461723794091085E-5 48-49 2.603110282936395E-4 5.061603327931879E-4 0.0 0.10434856803626422 1.4461723794091085E-5 50-51 2.6754189019068505E-4 5.495455041754612E-4 0.0 0.11751596755078415 1.4461723794091085E-5 52-53 2.747727520877306E-4 5.495455041754612E-4 0.0 0.1306978287890982 1.4461723794091085E-5 54-55 2.747727520877306E-4 5.640072279695522E-4 0.0 0.1427661372952672 1.4461723794091085E-5 56-57 2.747727520877306E-4 5.929306755577344E-4 0.0 0.15434997805433415 1.4461723794091085E-5 58-59 2.747727520877306E-4 5.929306755577344E-4 0.0 0.16476965004797678 1.4461723794091085E-5 60-61 3.1815792347000387E-4 6.073923993518256E-4 0.0 0.17420592482362118 1.4461723794091085E-5 62-63 3.615430948522771E-4 6.146232612488712E-4 0.0 0.18366389218495677 1.4461723794091085E-5 64-65 3.615430948522771E-4 7.809330848809185E-4 0.0 0.1933387854032037 1.4461723794091085E-5 66-67 3.760048186463682E-4 7.809330848809185E-4 0.0 0.2027967527645393 1.4461723794091085E-5 68-69 3.760048186463682E-4 7.953948086750096E-4 0.0 0.21108332049855347 1.4461723794091085E-5 70-71 3.760048186463682E-4 8.170873943661463E-4 0.0 0.21850218480492217 1.4461723794091085E-5 72-73 4.3385171382273255E-4 8.315491181602373E-4 0.0 0.2242362582892793 1.4461723794091085E-5 74-75 4.3385171382273255E-4 8.387799800572829E-4 0.0 0.22878447042252095 1.4461723794091085E-5 76-77 4.3385171382273255E-4 8.53241703851374E-4 0.0 0.23345560720801237 1.4461723794091085E-5 78-79 4.3385171382273255E-4 8.53241703851374E-4 0.0 0.23677457281875627 1.4461723794091085E-5 80-81 4.3385171382273255E-4 8.53241703851374E-4 0.0 0.23772181572726925 1.4461723794091085E-5 82-83 4.3385171382273255E-4 8.53241703851374E-4 0.0 0.23848105622645904 1.4461723794091085E-5 84-85 4.3385171382273255E-4 8.53241703851374E-4 0.0 0.23874136725475265 1.4461723794091085E-5 86-87 4.410825757197781E-4 8.821651514395562E-4 0.0 0.2388570610451054 1.4461723794091085E-5 88 4.772368852050058E-4 9.544737704100116E-4 0.0 0.23886429190700245 1.4461723794091085E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6855 0.0 40.435173 1 GTATCAA 11680 0.0 32.67767 1 CTTATAC 6435 0.0 30.740797 1 ATCAACG 13060 0.0 27.97269 3 TCAACGC 13120 0.0 27.814371 4 CAACGCA 13300 0.0 27.347973 5 AACGCAG 13720 0.0 26.597998 6 TATCAAC 14175 0.0 26.25068 2 TATACAC 9270 0.0 24.222034 3 ACGCAGA 16135 0.0 22.592234 7 CGCAGAG 16640 0.0 21.978497 8 TTATACA 9640 0.0 21.92708 2 GTACATG 16950 0.0 19.623583 1 TACATGG 16740 0.0 19.512388 2 ACATCTC 10705 0.0 19.112288 8 ACATGGG 16865 0.0 18.847507 3 TACACAT 11780 0.0 18.722412 5 GCAGAGT 20230 0.0 18.196495 9 ACACATC 11145 0.0 18.07146 6 GAGTACT 11330 0.0 16.790764 12-13 >>END_MODULE