##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140196_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7347010 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15299502790931 33.0 31.0 34.0 31.0 34.0 2 32.44255336524654 34.0 31.0 34.0 31.0 34.0 3 32.23704758806644 33.0 31.0 34.0 30.0 34.0 4 36.06091947608619 37.0 35.0 37.0 35.0 37.0 5 35.896533555827475 37.0 35.0 37.0 35.0 37.0 6 35.99529427617493 37.0 35.0 37.0 35.0 37.0 7 35.96450746630262 37.0 35.0 37.0 35.0 37.0 8 35.93832511457042 37.0 35.0 37.0 35.0 37.0 9 37.728654377767285 39.0 37.0 39.0 35.0 39.0 10-11 37.649576086054054 39.0 37.0 39.0 35.0 39.0 12-13 37.62343946721183 39.0 37.0 39.0 35.0 39.0 14-15 38.94684790139118 40.0 38.0 41.0 35.5 41.0 16-17 38.925331393315105 40.0 38.0 41.0 35.0 41.0 18-19 38.89223786274961 40.0 38.0 41.0 35.0 41.0 20-21 38.884633058720624 40.0 38.0 41.0 35.0 41.0 22-23 38.79481374565401 40.0 38.0 41.0 34.5 41.0 24-25 38.730760245005136 40.0 38.0 41.0 34.0 41.0 26-27 38.58090756047447 40.0 38.0 41.0 34.0 41.0 28-29 38.45107511961106 40.0 38.0 41.0 34.0 41.0 30-31 38.30463711675195 40.0 38.0 41.0 34.0 41.0 32-33 38.148889571609175 40.0 38.0 41.0 33.5 41.0 34-35 38.25060230809162 40.0 38.0 41.0 34.0 41.0 36-37 38.24766369269439 40.0 38.0 41.0 34.0 41.0 38-39 38.174505362471784 40.0 38.0 41.0 33.0 41.0 40-41 38.160491416241996 40.0 38.0 41.0 33.0 41.0 42-43 38.234946121625775 40.0 38.0 41.0 33.0 41.0 44-45 38.1942295688289 40.0 38.0 41.0 33.0 41.0 46-47 38.109452949558175 40.0 37.5 41.0 33.0 41.0 48-49 38.01250996451269 40.0 37.0 41.0 33.0 41.0 50-51 37.89803799717998 40.0 37.0 41.0 33.0 41.0 52-53 37.74900304147367 40.0 37.0 41.0 33.0 41.0 54-55 37.5890594689687 40.0 36.0 41.0 32.0 41.0 56-57 37.48217249443876 39.0 36.0 41.0 32.0 41.0 58-59 37.276968687460545 39.0 36.0 41.0 32.0 41.0 60-61 37.08186660818653 39.0 35.0 41.0 31.0 41.0 62-63 36.82107966631537 38.5 35.0 40.0 31.0 41.0 64-65 36.52084708527253 38.0 35.0 40.0 31.0 41.0 66-67 36.23695274524682 37.5 35.0 40.0 31.0 41.0 68-69 35.95326833256462 37.0 34.5 39.5 30.0 41.0 70-71 35.63826590813815 36.5 34.0 39.0 30.0 41.0 72-73 35.16645187389706 36.0 34.0 39.0 29.0 40.0 74-75 34.92440415550806 35.5 34.0 38.5 29.0 40.0 76-77 33.7007898305655 34.5 32.0 36.5 28.5 39.0 78-79 34.41098225069847 35.0 34.0 37.0 29.5 39.0 80-81 34.309632248268585 35.0 34.0 37.0 30.0 39.0 82-83 34.06306733020024 35.0 34.0 36.0 29.0 38.0 84-85 33.839544730144254 35.0 34.0 36.0 29.0 37.0 86-87 33.650895011909256 35.0 33.0 35.5 29.0 37.0 88-89 33.465405883890284 35.0 33.0 35.0 29.0 36.5 90-91 33.314450456234965 35.0 33.0 35.0 29.0 36.0 92-93 33.228565483497434 35.0 33.0 35.0 29.0 36.0 94-95 33.185193390676666 35.0 33.0 35.0 29.0 36.0 96-97 33.23984087137016 35.0 33.0 35.0 29.0 35.0 98-99 33.350007591160626 35.0 33.0 35.0 29.5 35.0 100 32.138919644637774 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 4.0 20 30.0 21 211.0 22 979.0 23 3540.0 24 9236.0 25 20014.0 26 36339.0 27 58128.0 28 83275.0 29 112354.0 30 143637.0 31 177372.0 32 220350.0 33 280322.0 34 375447.0 35 526522.0 36 832085.0 37 1479811.0 38 1910926.0 39 1036319.0 40 40107.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.638734668933346 20.121028826692765 13.703125489144563 24.537111015229325 2 15.144990955504348 20.966815071709444 40.450999794474214 23.437194178311994 3 18.57909544154697 25.23180178058829 30.218265661813444 25.970837116051293 4 12.767615669503648 17.560803646653536 38.09726677927483 31.57431390456798 5 13.44941683759788 37.50634611903346 35.6107314404091 13.433505602959572 6 31.059165565311602 37.32402705318218 18.236588761958945 13.380218619547271 7 27.31113745591744 32.03918328680647 22.531192961490458 18.118486295785633 8 24.85127963620575 36.64961664677195 20.86488244877848 17.634221268243817 9 25.26732643619649 16.73848272970909 21.022388699620663 36.971802134473755 10-11 24.49428406930166 26.60107989508657 28.59832775510037 20.30630828051139 12-13 24.99948958828149 23.869138601961886 28.82987092708462 22.301500882672 14-15 22.05599284606935 25.533666076403872 26.14194754056412 26.268393536962652 16-17 22.079805254110173 28.781531534597065 26.881425232849825 22.25723797844293 18-19 22.09653995298768 27.982601085339475 28.265525703653594 21.655333258019247 20-21 22.717295922871177 27.22048617692698 28.207812074512834 21.854405825689014 22-23 22.471385769126105 27.25489750308104 27.98504247295675 22.288674254836106 24-25 22.28266452736988 27.304388696828276 28.19049081761453 22.222455958187314 26-27 22.347374741756997 27.493259050526675 28.044304595833186 22.115061611883142 28-29 22.186823688925685 27.448938354135876 28.048186900984057 22.316051055954382 30-31 22.52927529688099 27.334950806247356 28.03451501181624 22.10125888505542 32-33 22.381881187840786 27.407936750256646 28.06490936559926 22.145272696303305 34-35 22.26897366506268 27.469642122147715 28.175195219915754 22.086188992873854 36-37 22.386671021655836 27.435069089800347 27.94817064861809 22.230089239925732 38-39 22.11837595506419 27.514477729893628 28.11865094072371 22.248495374318473 40-41 22.38411098658671 27.35628872407359 28.06621863227709 22.19338165706261 42-43 22.285854230693896 27.434013160269938 27.9748054770875 22.305327131948662 44-45 22.269227081779576 27.569600917515196 27.828337904990207 22.332834095715018 46-47 22.446599388150346 27.44819603892558 27.593489443032265 22.51171512989181 48-49 22.33162465329607 27.5078572258585 27.647284811308616 22.51323330953681 50-51 22.232040425971032 27.66654249866533 27.664937774595405 22.43647930076823 52-53 22.402025206608688 27.650647659075016 27.642305819490844 22.305021314825453 54-55 22.354555462698688 27.542848223979853 27.583383655356396 22.51921265796506 56-57 22.43118310372666 27.684483204985423 27.46140754278221 22.422926148505706 58-59 22.175137628898455 27.756305921704875 27.56171027411371 22.50684617528296 60-61 22.51078440415728 27.78524337347743 27.54177390981883 22.16219831254646 62-63 22.180200092497106 27.889993811946656 27.511486741791753 22.41831935376449 64-65 22.166778109599296 27.794636888412143 27.502890979576588 22.53569402241197 66-67 22.22661923288055 27.782910020390013 27.633143810669107 22.35732693606033 68-69 22.217297720443757 27.977120844869667 27.494815614196465 22.310765820490108 70-71 22.22756868860229 27.712644700161615 27.273288032823316 22.78649857841278 72-73 22.297617436889517 27.68793642016342 27.212112910179275 22.802333232767786 74-75 22.19315782621787 27.807322612159613 27.492597209903018 22.506922351719496 76-77 22.3564034481711 27.512875645632697 27.371874190175443 22.758846716020763 78-79 22.23351895080447 27.54119091205009 27.11393229138297 23.11135784576247 80-81 22.506339222385776 27.848914235670964 27.139670262403314 22.505076279539946 82-83 22.58270547954401 27.56407169678855 27.221925765959547 22.63129705770789 84-85 22.429305871803496 27.53318566918437 27.132104040023293 22.905404418988848 86-87 22.274738293566116 27.824407766858183 27.237107104775067 22.663746834800634 88-89 22.569705421836623 27.815359559162093 27.23211611040881 22.38281890859247 90-91 22.610692489458874 27.865961249493125 27.20603680442377 22.317309456624226 92-93 22.33250404730715 27.537754269754565 27.27858951345807 22.851152169480216 94-95 22.46422196520132 27.883549111713513 27.37900305591787 22.273225867167294 96-97 22.74973680688176 27.734348185207768 27.450257563752068 22.06565744415841 98-99 23.387182225020943 29.859510863149836 27.870535748751568 18.882771163077656 100 29.88622263670475 41.42948338505706 28.684293978238184 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1109.0 1 1005.0 2 1376.5 3 1965.0 4 2537.0 5 4005.0 6 5345.0 7 6318.5 8 6978.5 9 6853.5 10 6301.0 11 5822.0 12 6262.5 13 8072.0 14 12466.0 15 18530.5 16 23714.5 17 27115.5 18 28470.5 19 28289.0 20 27559.0 21 27118.5 22 27907.5 23 31081.5 24 37446.0 25 46810.5 26 59597.5 27 74452.5 28 89436.5 29 105605.0 30 120751.0 31 135768.0 32 151982.5 33 168225.5 34 184797.0 35 200837.5 36 218814.5 37 235491.5 38 249228.0 39 262360.5 40 276043.0 41 289229.5 42 298499.5 43 306670.0 44 315412.5 45 322091.5 46 327265.0 47 333269.0 48 338463.0 49 338641.5 50 334231.0 51 325455.0 52 308847.0 53 289182.0 54 269407.5 55 247814.0 56 226505.5 57 205640.5 58 183259.0 59 158298.5 60 133537.5 61 110318.5 62 88672.5 63 69891.0 64 53905.5 65 41898.5 66 32707.5 67 24461.5 68 17962.5 69 13295.0 70 9493.0 71 6608.0 72 4683.5 73 3246.5 74 2192.0 75 1496.0 76 1002.5 77 653.5 78 454.5 79 316.0 80 219.0 81 146.5 82 103.0 83 66.0 84 39.5 85 27.5 86 20.5 87 16.0 88 13.0 89 11.5 90 10.0 91 6.0 92 4.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005199584768238378 22-23 0.004839310062763333 24-25 0.0035876048863859315 26-27 0.01656186113914551 28-29 0.021180103868374243 30-31 0.03948908967989331 32-33 0.0243281746830045 34-35 0.012320271507983357 36-37 0.007296979527718735 38-39 0.0028530168944639056 40-41 0.007969302135533611 42-43 0.01001261703445328 44-45 0.006125489374897042 46-47 0.0019907786262159826 48-49 0.009796455667326771 50-51 0.00466536898091255 52-53 7.501653739566888E-6 54-55 4.924841240165945E-4 56-57 6.816920270143062E-4 58-59 5.101993093602015E-4 60-61 9.83263911779689E-4 62-63 7.736980556494169E-4 64-65 0.0 66-67 2.4267988484677678E-4 68-69 5.982578240445064E-4 70-71 3.154737290497425E-4 72-73 6.554925909168223E-4 74-75 3.401322076884675E-4 76-77 0.0 78-79 8.715116439184697E-6 80-81 4.062596845464203E-4 82-83 0.002282293172998807 84-85 3.627070751364935E-5 86-87 6.435626451233765E-4 88-89 2.7063288807379656E-4 90-91 0.008443192870226419 92-93 8.399636556415482E-4 94-95 2.954765495036486E-5 96-97 2.2274420865057507E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 176.0 20-21 558.0 22-23 1055.0 24-25 2313.0 26-27 4093.0 28-29 9007.0 30-31 21403.0 32-33 27480.0 34-35 38313.0 36-37 58741.0 38-39 64951.0 40-41 66053.0 42-43 70522.0 44-45 80336.0 46-47 79390.0 48-49 74771.0 50-51 66822.0 52-53 64847.0 54-55 69730.0 56-57 74860.0 58-59 45255.0 60-61 75183.0 62-63 73039.0 64-65 76749.0 66-67 80212.0 68-69 79368.0 70-71 74531.0 72-73 69828.0 74-75 70532.0 76-77 71044.0 78-79 75413.0 80-81 75840.0 82-83 72335.0 84-85 74203.0 86-87 79289.0 88-89 85445.0 90-91 90936.0 92-93 97512.0 94-95 120369.0 96-97 305799.0 98-99 1534760.0 100-101 3143947.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.36516414248953 #Duplication Level Percentage of deduplicated Percentage of total 1 91.73706054901632 81.06360413363329 2 6.025084005378685 10.648150742151516 3 1.3178938248620637 3.4936771246892886 4 0.44455447170189183 1.5713251544886158 5 0.19392666426054903 0.8568180759494436 6 0.09899935402569353 0.5248856501088505 7 0.049903850147161546 0.3086833336717291 8 0.035507619785334205 0.2510109320512132 9 0.024302493820663722 0.19327444699813087 >10 0.07167658884520962 0.941106261109342 >50 7.975253948936575E-4 0.04572774674210591 >100 2.277984002048189E-4 0.04751478216578577 >500 4.3502909279625265E-5 0.031425858549240335 >1k 2.1751452060463047E-5 0.02279575769149127 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3610979160229807E-5 0.0 0.0 0.0 3 0.0 1.3610979160229807E-5 0.0 0.0 0.0 4 0.0 4.0832937480689423E-5 0.0 1.3610979160229807E-5 0.0 5 0.0 5.444391664091923E-5 0.0 2.7221958320459614E-5 0.0 6 0.0 5.444391664091923E-5 0.0 2.7221958320459614E-5 0.0 7 0.0 5.444391664091923E-5 0.0 2.7221958320459614E-5 1.3610979160229807E-5 8 0.0 5.444391664091923E-5 0.0 2.7221958320459614E-5 1.3610979160229807E-5 9 0.0 1.769427290829875E-4 0.0 4.0832937480689423E-5 1.3610979160229807E-5 10-11 1.3610979160229807E-5 1.769427290829875E-4 0.0 4.0832937480689423E-5 1.3610979160229807E-5 12-13 2.7221958320459614E-5 1.9055370824321732E-4 0.0 6.805489580114903E-5 2.7221958320459614E-5 14-15 2.7221958320459614E-5 2.7902507278471106E-4 0.0 6.805489580114903E-5 4.0832937480689423E-5 16-17 4.0832937480689423E-5 2.85830562364826E-4 0.0 6.805489580114903E-5 5.444391664091923E-5 18-19 5.444391664091923E-5 3.266634998455154E-4 0.0 6.805489580114903E-5 6.124940622103413E-5 20-21 6.805489580114903E-5 3.4027447900574517E-4 0.0 1.0208234370172355E-4 6.805489580114903E-5 22-23 9.527685412160866E-5 3.879129060665495E-4 0.0 1.3610979160229807E-4 8.847136454149374E-5 24-25 1.1569332286195336E-4 4.4235682270746875E-4 0.0 2.1097017698356202E-4 1.0888783328183846E-4 26-27 1.3610979160229807E-4 4.6277329144781346E-4 0.0 3.879129060665495E-4 1.0888783328183846E-4 28-29 1.3610979160229807E-4 4.6277329144781346E-4 0.0 9.051301141552821E-4 1.0888783328183846E-4 30-31 1.633317499227577E-4 4.763842706080433E-4 0.0 0.0034299667483779113 1.1569332286195336E-4 32-33 1.633317499227577E-4 4.763842706080433E-4 0.0 0.007976033787894667 1.3610979160229807E-4 34-35 1.769427290829875E-4 5.852721038898817E-4 0.0 0.013985281087136127 1.3610979160229807E-4 36-37 1.9055370824321732E-4 7.00965426751835E-4 0.0 0.024806009519518824 1.3610979160229807E-4 38-39 1.9055370824321732E-4 7.349928746524096E-4 0.0 0.05496793933858808 1.3610979160229807E-4 40-41 1.973591978233322E-4 8.302697287740183E-4 0.0 0.08650457805284054 1.3610979160229807E-4 42-43 2.041646874034471E-4 8.642971766745928E-4 0.0 0.10545106104388044 1.3610979160229807E-4 44-45 2.041646874034471E-4 0.0010276289265973505 0.0 0.1282698676060057 1.3610979160229807E-4 46-47 2.1097017698356202E-4 0.0011569332286195336 0.0 0.1520482481989272 1.4972077076252788E-4 48-49 2.1777566656367692E-4 0.0011569332286195336 0.0 0.1737441489803335 1.633317499227577E-4 50-51 2.1777566656367692E-4 0.0013066539993820615 0.0 0.19432394947060094 1.633317499227577E-4 52-53 2.3138664572390673E-4 0.0013066539993820615 0.0 0.2476721822891217 1.9055370824321732E-4 54-55 2.3819213530402162E-4 0.001340681447282636 0.0 0.3098131076451509 2.1777566656367692E-4 56-57 2.5180311446425143E-4 0.0013610979160229807 0.0 0.37106251386618505 2.245811561437918E-4 58-59 2.7221958320459614E-4 0.0013610979160229807 0.0 0.6223348001431874 2.3138664572390673E-4 60-61 2.9263605194494084E-4 0.0013815143847633253 0.0 0.84694998373488 2.449976248841365E-4 62-63 2.9944154152505576E-4 0.001422347322244015 0.0 0.8575257145423785 2.5860860404436635E-4 64-65 2.9944154152505576E-4 0.0015788735825866577 0.0 0.8664681278506494 2.5860860404436635E-4 66-67 2.9944154152505576E-4 0.0015992900513270023 0.0 0.8748184635654505 2.5860860404436635E-4 68-69 2.9944154152505576E-4 0.001694566905448611 0.0 0.8829101906762071 2.6541409362448127E-4 70-71 2.9944154152505576E-4 0.0017149833741889556 0.0 0.8891167971732719 2.7221958320459614E-4 72-73 2.9944154152505576E-4 0.0017422053325094153 0.0 0.8939691112438938 2.85830562364826E-4 74-75 2.9944154152505576E-4 0.0017558163116696453 0.0 0.8980660159711229 2.85830562364826E-4 76-77 2.9944154152505576E-4 0.0018238712074707944 0.0 0.9017545913235452 2.85830562364826E-4 78-79 2.9944154152505576E-4 0.0018647041449514838 0.0 0.9041705401244859 2.85830562364826E-4 80-81 2.9944154152505576E-4 0.0018783151241117135 0.0 0.9051437251344425 3.198580102654005E-4 82-83 2.9944154152505576E-4 0.0018851206136918284 0.0 0.9057085807695919 3.8110741648643464E-4 84-85 3.062470311051707E-4 0.0019259535511725178 0.0 0.9058991344778351 3.8110741648643464E-4 86-87 3.130525206852856E-4 0.001959980999073092 0.0 0.9060216332902773 3.8110741648643464E-4 88 3.130525206852856E-4 0.0020144249157140115 0.0 0.9060420497590176 3.8110741648643464E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6680 0.0 40.15904 1 GTATCAA 11465 0.0 32.577736 1 TCAACGC 12450 0.0 28.740623 4 ATCAACG 12775 0.0 28.041758 3 CAACGCA 13000 0.0 27.588167 5 AACGCAG 13505 0.0 26.678785 6 TATCAAC 14100 0.0 25.962763 2 ACGCAGA 16200 0.0 22.189604 7 CGCAGAG 16750 0.0 21.48563 8 GTACATG 17945 0.0 20.813807 1 TACATGG 17705 0.0 20.326702 2 GTGGTAT 4140 0.0 19.63868 1 ACATGGG 18140 0.0 19.40699 3 TGGTATC 3865 0.0 18.686802 2 ACCGAGG 10815 0.0 17.908045 90-91 GCAGAGT 20510 0.0 17.667507 9 CATGGGG 13680 0.0 17.618671 4 GACCGAG 10650 0.0 17.608177 90-91 AGACCGA 10695 0.0 17.552408 88-89 CGAGACC 10615 0.0 17.358875 86-87 >>END_MODULE