##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140193_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6446098 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46990815218757 34.0 31.0 34.0 31.0 34.0 2 32.67325737213427 34.0 31.0 34.0 31.0 34.0 3 32.779108074373056 34.0 31.0 34.0 31.0 34.0 4 36.236444900465365 37.0 37.0 37.0 35.0 37.0 5 36.08115203957495 37.0 35.0 37.0 35.0 37.0 6 36.125318293330324 37.0 35.0 37.0 35.0 37.0 7 36.109843505326786 37.0 35.0 37.0 35.0 37.0 8 36.07642313225769 37.0 35.0 37.0 35.0 37.0 9 37.945529217830696 39.0 38.0 39.0 35.0 39.0 10-11 37.831946085833636 39.0 38.0 39.0 35.0 39.0 12-13 37.85472203494269 39.0 38.0 39.0 35.0 39.0 14-15 39.218745355717516 40.0 39.0 41.0 36.0 41.0 16-17 39.1916968994266 40.0 39.0 41.0 36.0 41.0 18-19 39.21955887111862 40.0 39.0 41.0 36.0 41.0 20-21 39.217387497960786 40.0 39.0 41.0 36.0 41.0 22-23 39.18275080316286 40.0 39.0 41.0 36.0 41.0 24-25 39.187311821193376 40.0 39.0 41.0 36.0 41.0 26-27 39.06657616106307 40.0 39.0 41.0 36.0 41.0 28-29 38.98346025409798 40.0 39.0 41.0 35.5 41.0 30-31 38.89190479384713 40.0 38.0 41.0 35.0 41.0 32-33 38.81059954589469 40.0 38.0 41.0 35.0 41.0 34-35 38.75021834559924 40.0 38.0 41.0 35.0 41.0 36-37 38.72209795040963 40.0 38.0 41.0 35.0 41.0 38-39 38.6568186524845 40.0 38.0 41.0 35.0 41.0 40-41 38.633607037253796 40.0 38.0 41.0 35.0 41.0 42-43 38.60616668089029 40.0 38.0 41.0 35.0 41.0 44-45 38.54331581852925 40.0 38.0 41.0 34.5 41.0 46-47 38.46686060748153 40.0 38.0 41.0 34.0 41.0 48-49 38.42911575085382 40.0 38.0 41.0 34.0 41.0 50-51 38.353087539479745 40.0 38.0 41.0 34.0 41.0 52-53 38.18087331480125 40.0 37.5 41.0 34.0 41.0 54-55 38.03430473878613 40.0 37.0 41.0 33.5 41.0 56-57 37.881576659813405 39.5 37.0 41.0 33.0 41.0 58-59 37.71435900431378 39.0 36.0 41.0 33.0 41.0 60-61 37.57390646719893 39.0 36.0 41.0 33.0 41.0 62-63 37.361957847137106 39.0 35.5 40.5 33.0 41.0 64-65 37.128425037323694 39.0 35.0 40.0 32.0 41.0 66-67 36.88690620765675 38.0 35.0 40.0 32.0 41.0 68-69 36.60206477467713 37.0 35.0 40.0 32.0 41.0 70-71 36.29442046871915 37.0 35.0 39.5 32.0 41.0 72-73 35.97705281474572 36.0 35.0 39.0 31.5 41.0 74-75 35.58170973338137 36.0 34.5 39.0 31.0 40.0 76-77 33.61301967844106 34.5 32.0 36.5 28.0 39.0 78-79 34.743710982952784 35.0 34.0 37.0 30.5 39.0 80-81 34.72743817700841 35.0 34.0 37.0 31.0 39.0 82-83 34.47183587355022 35.0 34.0 36.0 31.0 38.5 84-85 34.17708034113839 35.0 34.0 36.0 30.5 37.0 86-87 34.0102313830185 35.0 34.0 35.5 30.0 37.0 88-89 33.835318915938615 35.0 34.0 35.0 30.0 36.5 90-91 33.679137933421096 35.0 34.0 35.0 30.0 36.0 92-93 33.61160522228056 35.0 34.0 35.0 30.0 36.0 94-95 33.5505740148182 35.0 34.0 35.0 30.0 36.0 96-97 33.57767316844626 35.0 34.0 35.0 30.0 35.5 98-99 33.61495608848378 35.0 34.0 35.0 30.0 35.0 100-101 32.35786090347686 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 31.0 21 103.0 22 415.0 23 1427.0 24 3731.0 25 8372.0 26 15598.0 27 26217.0 28 39274.0 29 56234.0 30 75806.0 31 100873.0 32 135055.0 33 185906.0 34 276789.0 35 436573.0 36 805313.0 37 1547047.0 38 1881995.0 39 834492.0 40 14838.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.705121765136056 19.75590504519168 12.791738505992306 24.747234683679956 2 15.418005358386713 21.381948721449216 39.55206121033763 23.64798470982645 3 18.580232568601968 25.60397002962102 30.297134793793084 25.518662607983934 4 12.75578733833477 17.396455597542744 38.27712018308744 31.570636881035053 5 13.223764747166063 37.753722462480624 35.80365025568296 13.218862534670356 6 30.899826638690985 37.43338388088876 18.398467284355206 13.268322196065046 7 26.91757090878854 32.24089984359531 23.141565641726203 17.699963605889952 8 25.037255096028638 36.12579268884836 21.219627749996974 17.617324465126032 9 25.824925404485004 16.08779450762306 20.961626708126374 37.12565337976555 10-11 24.4669585755673 26.37304095903321 29.040765116757093 20.11923534864239 12-13 25.015720827577564 23.910892014533207 29.106556688485917 21.966830469403316 14-15 22.091195486881794 25.468649830381874 26.34662289858321 26.09353178415312 16-17 22.058049691456755 28.51694932345118 27.11289062003091 22.31211036506116 18-19 22.07901345766622 27.98487471782044 28.381754750231092 21.554357074282247 20-21 22.74190077645372 27.22985509310479 28.221673216108943 21.80657091433255 22-23 22.46351180592015 27.07617535312013 28.12633615091865 22.333976690041073 24-25 22.29453249441725 27.225876797296223 28.197917454848113 22.28167325343841 26-27 22.279236205511516 27.406705961388546 28.099463124650093 22.214594708449845 28-29 22.20466133841184 27.478617212890104 28.122224165756784 22.19449728294127 30-31 22.404860711743517 27.35514499398983 28.05950874321101 22.180485551055646 32-33 22.171090061686215 27.547222526492476 28.000770980024363 22.28091643179694 34-35 22.341155065474684 27.549881381150133 27.959289502055167 22.14967405132002 36-37 22.38106194367116 27.42842708128903 27.94569597424982 22.24481500078999 38-39 22.20600677308474 27.55156091167288 28.03976954624259 22.20266276899979 40-41 22.428738100845283 27.427618640430847 27.94441671436232 22.199226544361554 42-43 22.27953490543068 27.553934559328034 27.785408215473822 22.381122319767464 44-45 22.371138779709305 27.65852106359967 27.629331095518218 22.34100906117281 46-47 22.45878655457326 27.532703078780763 27.486010954266533 22.522499412379446 48-49 22.407773527436127 27.60622728255328 27.475211538394777 22.510787651615818 50-51 22.358946130128647 27.742906579141412 27.431097872573933 22.467049418156 52-53 22.52120318362213 27.650174578733928 27.351165665459437 22.47745657218451 54-55 22.471048199376433 27.547699197123322 27.37140958386574 22.609843019634507 56-57 22.4787328507372 27.680904177582477 27.31918831921927 22.521174652461053 58-59 22.461504458441183 27.70142127122271 27.339009548574495 22.49806472176161 60-61 22.534580497105665 27.679249801834754 27.32099956028233 22.465170140777246 62-63 22.48496414403891 27.79310447554892 27.282514035269674 22.439417345142505 64-65 22.46558337283883 27.678697574018933 27.283311566272733 22.572407486869498 66-67 22.529338763863123 27.693869077736803 27.15328521221459 22.623506946185486 68-69 22.492451452502447 27.65624643328783 27.25537808425189 22.595924029957832 70-71 22.458095526441177 27.526942166555727 27.27500095010405 22.73996135689904 72-73 22.509864963332674 27.538007630496274 27.219603131393555 22.732524274777496 74-75 22.397941271933604 27.65324390580241 27.237580117348543 22.71123470491544 76-77 22.560095330838077 27.611085262271217 27.151900659601573 22.676918747289136 78-79 22.480539450567786 27.600008130595523 27.1459329430166 22.773519475820095 80-81 22.489164567783245 27.607993324341283 27.158314117638067 22.744527990237405 82-83 22.554573944577523 27.615297376555198 27.20796323685597 22.62216544201131 84-85 22.59591298175253 27.595568673629202 27.158626039242073 22.649892305376195 86-87 22.48115973843702 27.611076479862724 27.23757281763554 22.67019096406472 88-89 22.549329454226395 27.510376866384505 27.21280549327012 22.727488186118983 90-91 22.535738348849247 27.61857839060209 27.21566029467976 22.6300229658689 92-93 22.573792431415445 27.58386681050058 27.225551916358153 22.616788841725818 94-95 22.427871675893233 27.611375438208828 27.28278815796435 22.677964727933585 96-97 22.47069106639909 27.61046864967542 27.300874374344186 22.617965909581304 98-99 22.76812916299621 28.123960105868374 27.40350155514691 21.704409175988513 100-101 26.96371665488641 35.19749188116513 27.94142116923835 9.897370294710107 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1659.0 1 1413.5 2 1612.0 3 2171.5 4 2808.5 5 4242.0 6 5497.0 7 6370.5 8 6995.0 9 6957.5 10 6400.0 11 5892.5 12 6411.0 13 8478.0 14 12771.0 15 18202.0 16 22718.0 17 25463.5 18 26380.0 19 26082.0 20 25615.0 21 25643.5 22 26745.0 23 30174.0 24 36634.5 25 45857.0 26 57689.5 27 70995.5 28 85008.5 29 99985.0 30 114832.5 31 128699.5 32 141825.5 33 154876.5 34 168198.5 35 181041.0 36 194926.0 37 207460.0 38 217406.0 39 227846.5 40 238038.5 41 247209.0 42 254157.5 43 261135.0 44 270046.5 45 279164.0 46 287446.5 47 292003.5 48 291526.0 49 289185.5 50 285219.5 51 277473.0 52 266332.0 53 253200.5 54 239914.0 55 225711.0 56 210435.0 57 192997.0 58 173001.0 59 151924.5 60 129516.5 61 107418.5 62 87244.5 63 69342.0 64 53867.0 65 41744.5 66 32539.5 67 24950.5 68 18755.5 69 14283.5 70 10881.5 71 8025.0 72 5864.0 73 4283.5 74 3099.0 75 2196.0 76 1518.0 77 1004.5 78 669.5 79 460.5 80 317.5 81 224.5 82 168.5 83 115.0 84 72.5 85 50.0 86 35.0 87 27.0 88 19.0 89 12.0 90 7.5 91 5.5 92 4.5 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001985697393989356 3 0.0 4 0.003350864352357038 5 4.498845658257135E-4 6 3.568050004824624E-4 7 0.0 8 0.0 9 0.0 10-11 3.568050004824624E-4 12-13 4.886677180520681E-4 14-15 7.756630445270922E-6 16-17 0.0 18-19 0.0010781716318926582 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.434665307689788E-5 28-29 0.0 30-31 7.786202102399146E-5 32-33 9.766068287943382E-4 34-35 5.887341250786843E-4 36-37 4.426148642875643E-4 38-39 0.0016440418049504012 40-41 0.0 42-43 1.6291780576759988E-5 44-45 9.89210026764726E-5 46-47 3.3423127350220316E-5 48-49 5.080424388170841E-5 50-51 1.629091946721148E-4 52-53 0.0 54-55 0.003037416138564466 56-57 0.002650318883166295 58-59 0.001577402652398053 60-61 1.1874372427999515E-4 62-63 2.7755506553722726E-5 64-65 1.4990205774302216E-4 66-67 6.647608290251292E-5 68-69 1.3484260737444588E-4 70-71 0.0 72-73 0.0 74-75 1.304718514507717E-4 76-77 0.0 78-79 3.8176508364163447E-4 80-81 0.0 82-83 1.5938859385469838E-4 84-85 3.232939080004681E-5 86-87 0.0015960973015898003 88-89 0.0 90-91 5.641053238793794E-5 92-93 2.294977338820012E-5 94-95 2.4525736490348425E-4 96-97 2.384244909637118E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 310.0 20-21 892.0 22-23 1541.0 24-25 2389.0 26-27 4500.0 28-29 10100.0 30-31 20512.0 32-33 27596.0 34-35 38720.0 36-37 58286.0 38-39 64138.0 40-41 62469.0 42-43 69454.0 44-45 80661.0 46-47 80414.0 48-49 75238.0 50-51 68658.0 52-53 66781.0 54-55 72485.0 56-57 75414.0 58-59 73307.0 60-61 71096.0 62-63 67113.0 64-65 70175.0 66-67 74150.0 68-69 73854.0 70-71 70867.0 72-73 66499.0 74-75 67678.0 76-77 67107.0 78-79 70947.0 80-81 70623.0 82-83 66065.0 84-85 65538.0 86-87 68551.0 88-89 71823.0 90-91 74456.0 92-93 74911.0 94-95 81877.0 96-97 122473.0 98-99 505467.0 100-101 3590963.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.42208859218755 #Duplication Level Percentage of deduplicated Percentage of total 1 92.465067058269 82.68419418167093 2 5.560798222767727 9.945163826392296 3 1.1696679401134966 3.137824504928118 4 0.3903605840820599 1.3962743493073617 5 0.16653205507706348 0.7445822091270112 6 0.08020591740295135 0.4303308390974636 7 0.05270407431145165 0.32990358815735055 8 0.0316202480925749 0.22620389009929456 9 0.019250420931991197 0.15492715614156766 >10 0.06275330653897798 0.8524384828531103 >50 8.418998311978903E-4 0.047249651630399556 >100 1.504417911656574E-4 0.02485962774117727 >500 4.78307903783968E-5 0.026047692853966898 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.102652178108369E-5 2 0.0 1.5513260890541845E-5 0.0 0.0 3.102652178108369E-5 3 0.0 1.5513260890541845E-5 0.0 1.5513260890541845E-5 3.102652178108369E-5 4 0.0 6.205304356216738E-5 0.0 6.205304356216738E-5 4.653978267162553E-5 5 0.0 6.205304356216738E-5 0.0 6.205304356216738E-5 4.653978267162553E-5 6 4.653978267162553E-5 6.205304356216738E-5 0.0 6.205304356216738E-5 4.653978267162553E-5 7 4.653978267162553E-5 6.205304356216738E-5 0.0 1.0859282623379291E-4 4.653978267162553E-5 8 4.653978267162553E-5 7.756630445270921E-5 0.0 1.0859282623379291E-4 9.307956534325106E-5 9 4.653978267162553E-5 1.0859282623379291E-4 0.0 1.5513260890541843E-4 1.2410608712433476E-4 10-11 4.653978267162553E-5 1.0859282623379291E-4 0.0 1.9391576113177305E-4 1.2410608712433476E-4 12-13 4.653978267162553E-5 1.0859282623379291E-4 0.0 2.5596880469394047E-4 1.2410608712433476E-4 14-15 4.653978267162553E-5 1.4737597846014753E-4 0.0 2.869953264750241E-4 1.5513260890541843E-4 16-17 1.0859282623379291E-4 1.5513260890541843E-4 0.0 3.568050004824624E-4 1.5513260890541843E-4 18-19 1.0859282623379291E-4 1.7064586979596028E-4 0.0 4.3437130493517164E-4 1.784025002412312E-4 20-21 1.0859282623379291E-4 2.0167239157704397E-4 0.0 5.041809789426099E-4 1.9391576113177305E-4 22-23 1.0859282623379291E-4 2.0167239157704397E-4 0.0 6.127738051764028E-4 2.0167239157704397E-4 24-25 1.0859282623379291E-4 2.404555438033986E-4 0.0 8.299594576439886E-4 2.0167239157704397E-4 26-27 1.0859282623379291E-4 2.7148206558448226E-4 0.0 0.001085928262337929 2.1718565246758582E-4 28-29 1.0859282623379291E-4 2.792386960297532E-4 0.0 0.0018383214155292087 2.2494228291285675E-4 30-31 1.0859282623379291E-4 2.9475195692029506E-4 0.0 0.0034206740263644764 2.3269891335812767E-4 32-33 1.0859282623379291E-4 2.9475195692029506E-4 0.0 0.0066396756611519095 2.482121742486695E-4 34-35 1.0859282623379291E-4 3.800748918182752E-4 0.0 0.010913579036496188 2.6372543513921137E-4 36-37 1.0859282623379291E-4 4.6539782671625534E-4 0.0 0.016676755457332482 2.6372543513921137E-4 38-39 1.0859282623379291E-4 4.6539782671625534E-4 0.0 0.025193535686239957 2.6372543513921137E-4 40-41 1.0859282623379291E-4 5.119376093878808E-4 0.0 0.03423776678542585 2.7148206558448226E-4 42-43 1.0859282623379291E-4 5.119376093878808E-4 0.0 0.04221158288316436 2.792386960297532E-4 44-45 1.1634945667906383E-4 6.205304356216737E-4 0.0 0.05141094659125567 2.9475195692029506E-4 46-47 1.2410608712433476E-4 7.136100009649248E-4 0.0 0.061735021713911264 3.0250858736556596E-4 48-49 1.2410608712433476E-4 7.136100009649248E-4 0.0 0.07169453520563913 3.4129173959192055E-4 50-51 1.3961934801487658E-4 7.98932935862905E-4 0.0 0.08134378347955616 3.4129173959192055E-4 52-53 1.5513260890541843E-4 8.066895663081759E-4 0.0 0.09027166512206299 3.6456163092773335E-4 54-55 1.5513260890541843E-4 8.066895663081759E-4 0.0 0.09905217078610967 4.2661467448990075E-4 56-57 1.5513260890541843E-4 8.066895663081759E-4 0.0 0.1085928262337929 4.809110876067972E-4 58-59 1.5513260890541843E-4 8.066895663081759E-4 0.0 0.11746641146318285 4.886677180520681E-4 60-61 1.784025002412312E-4 8.299594576439886E-4 0.0 0.1261693508227768 4.96424348497339E-4 62-63 2.3269891335812767E-4 8.687426098703433E-4 0.0 0.1341819500727417 5.274508702784227E-4 64-65 2.404555438033986E-4 9.152823925419688E-4 0.0 0.1420704432355822 5.274508702784227E-4 66-67 2.482121742486695E-4 9.152823925419688E-4 0.0 0.1499201532461964 5.274508702784227E-4 68-69 2.482121742486695E-4 9.307956534325107E-4 0.0 0.15800256217016867 5.274508702784227E-4 70-71 2.482121742486695E-4 9.463089143230525E-4 0.0 0.16539463098451188 5.584773920595064E-4 72-73 2.9475195692029506E-4 9.463089143230525E-4 0.0 0.17178609447141513 5.584773920595064E-4 74-75 2.9475195692029506E-4 9.773354361041363E-4 0.0 0.17678912110861483 5.584773920595064E-4 76-77 3.180218482561078E-4 9.92848696994678E-4 0.0 0.18083808220104627 5.584773920595064E-4 78-79 3.4129173959192055E-4 9.92848696994678E-4 0.0 0.18428978274919183 5.584773920595064E-4 80-81 3.4904837003719145E-4 9.92848696994678E-4 0.0 0.18605053786026832 5.584773920595064E-4 82-83 3.568050004824624E-4 9.92848696994678E-4 0.0 0.18664004177410892 5.584773920595064E-4 84-85 3.568050004824624E-4 0.0010083619578852199 0.0 0.18723730231839478 5.584773920595064E-4 86-87 3.568050004824624E-4 0.0010393884796663035 0.0 0.18756308079709616 5.584773920595064E-4 88-89 3.568050004824624E-4 0.001085928262337929 0.0 0.1876328904711036 5.662340225047773E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9145 0.0 28.17837 1 TCAACGC 12720 0.0 25.371464 4 GTATCAA 13415 0.0 25.307333 1 ATCAACG 12860 0.0 25.095259 3 CAACGCA 12910 0.0 25.029165 5 AACGCAG 13340 0.0 24.405968 6 GTACATG 15885 0.0 21.55248 1 TACATGG 15925 0.0 21.292864 2 TATCAAC 15800 0.0 21.072998 2 ACGCAGA 15695 0.0 20.613764 7 ACATGGG 16215 0.0 20.256023 3 CGCAGAG 16440 0.0 19.654745 8 CATGGGG 12265 0.0 17.708532 4 GAGTACT 9795 0.0 16.891296 12-13 GCAGAGT 19725 0.0 16.422918 9 CAGAGTA 17495 0.0 15.815976 10-11 AGAGTAC 15645 0.0 15.646987 10-11 GAGTACA 11675 0.0 14.7147 1 ATGGGGG 7545 0.0 14.4742985 5 GTACTTT 11445 0.0 14.456789 14-15 >>END_MODULE