##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140190_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8501376 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46393595577939 34.0 31.0 34.0 31.0 34.0 2 32.6779678960206 34.0 31.0 34.0 31.0 34.0 3 32.78530793132782 34.0 31.0 34.0 31.0 34.0 4 36.24772695620097 37.0 37.0 37.0 35.0 37.0 5 36.08064412161043 37.0 35.0 37.0 35.0 37.0 6 36.12549721362753 37.0 35.0 37.0 35.0 37.0 7 36.11548118798651 37.0 35.0 37.0 35.0 37.0 8 36.08716859482512 37.0 35.0 37.0 35.0 37.0 9 37.97061616848849 39.0 38.0 39.0 35.0 39.0 10-11 37.85596602244155 39.0 38.0 39.0 35.0 39.0 12-13 37.88127022025611 39.0 38.0 39.0 35.0 39.0 14-15 39.25137354235362 40.0 39.0 41.0 36.0 41.0 16-17 39.228636458380386 40.0 39.0 41.0 36.0 41.0 18-19 39.25832812241218 40.0 39.0 41.0 36.0 41.0 20-21 39.256729514789285 40.0 39.0 41.0 36.0 41.0 22-23 39.22205699174344 40.0 39.0 41.0 36.0 41.0 24-25 39.22689121654743 40.0 39.0 41.0 36.0 41.0 26-27 39.10577296065129 40.0 39.0 41.0 36.0 41.0 28-29 39.021381796181444 40.0 39.0 41.0 36.0 41.0 30-31 38.93021975064819 40.0 38.0 41.0 35.0 41.0 32-33 38.84583592133936 40.0 38.0 41.0 35.0 41.0 34-35 38.782431380404105 40.0 38.0 41.0 35.0 41.0 36-37 38.75115112096111 40.0 38.0 41.0 35.0 41.0 38-39 38.67789440501555 40.0 38.0 41.0 35.0 41.0 40-41 38.64594085712366 40.0 38.0 41.0 35.0 41.0 42-43 38.61484027055478 40.0 38.0 41.0 35.0 41.0 44-45 38.547452277179815 40.0 38.0 41.0 34.5 41.0 46-47 38.4651716127547 40.0 38.0 41.0 34.0 41.0 48-49 38.41635793268165 40.0 38.0 41.0 34.0 41.0 50-51 38.33500858598686 40.0 38.0 41.0 34.0 41.0 52-53 38.155209770472894 40.0 37.0 41.0 34.0 41.0 54-55 37.99621008701302 40.0 37.0 41.0 33.0 41.0 56-57 37.83610769145761 39.5 36.5 41.0 33.0 41.0 58-59 37.65055103193643 39.0 36.0 41.0 33.0 41.0 60-61 37.498749450983446 39.0 36.0 41.0 33.0 41.0 62-63 37.27639997147665 39.0 35.0 40.0 33.0 41.0 64-65 37.03020273239176 38.0 35.0 40.0 32.0 41.0 66-67 36.77679908142559 37.5 35.0 40.0 32.0 41.0 68-69 36.494249530923334 37.0 35.0 40.0 32.0 41.0 70-71 36.18660286835683 36.5 35.0 39.0 32.0 41.0 72-73 35.87802991837901 36.0 35.0 39.0 31.5 41.0 74-75 35.49629700762354 35.5 34.0 38.5 31.0 40.0 76-77 33.560736165201625 34.5 32.0 36.5 28.0 39.0 78-79 34.662549985270296 35.0 34.0 37.0 30.5 39.0 80-81 34.65888718046895 35.0 34.0 36.5 31.0 39.0 82-83 34.41872463629351 35.0 34.0 36.0 31.0 38.0 84-85 34.1376666790091 35.0 34.0 36.0 30.5 37.0 86-87 33.98908596945993 35.0 34.0 35.5 30.5 37.0 88-89 33.83037582835973 35.0 34.0 35.0 30.5 36.5 90-91 33.684482228588024 35.0 34.0 35.0 30.0 36.0 92-93 33.61976181966892 35.0 34.0 35.0 30.0 36.0 94-95 33.56590112725499 35.0 34.0 35.0 30.0 36.0 96-97 33.600563026590194 35.0 34.0 35.0 30.5 35.0 98-99 33.64103930843356 35.0 34.0 35.0 31.0 35.0 100-101 32.381256304457125 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 15.0 20 35.0 21 115.0 22 486.0 23 1676.0 24 4490.0 25 10009.0 26 19281.0 27 32094.0 28 48601.0 29 69987.0 30 96433.0 31 128943.0 32 174587.0 33 242800.0 34 366690.0 35 591383.0 36 1104104.0 37 2087666.0 38 2446177.0 39 1059761.0 40 16041.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.14332173991598 19.494538295918215 12.660762210729182 24.70137775343662 2 15.657145787817758 21.28919044592588 39.267734914472776 23.785928851783584 3 18.712853072255598 25.512081808874232 29.999872961741726 25.775192157128444 4 12.905050999342437 17.221756268901988 37.848464138128165 32.02472859362741 5 13.535302729424043 37.510095450677625 35.44376578130966 13.510836038588678 6 31.278490338060543 36.94512175541123 18.222700473230887 13.553687433297334 7 27.29514610340726 31.98929208636343 22.94113329418673 17.77442851604258 8 25.512940493397775 35.6782125622958 20.941209987653764 17.867636956652664 9 26.063004388936566 15.837447961365314 20.848448533507987 37.25109911619013 10-11 24.88430658290897 26.16887345395107 28.598499908485103 20.348320054654863 12-13 25.400898894326335 23.81166577053269 28.64152010043601 22.145915234704958 14-15 22.429068524687892 25.10427726153443 26.096934448478564 26.369719765299116 16-17 22.3773833788789 28.18113797107668 26.72209769336164 22.719380956682777 18-19 22.402853685397652 27.549338850144757 28.13654990494087 21.91125755951672 20-21 23.136372584499828 26.788109904842468 28.03573246633032 22.039785044327388 22-23 22.929017481179997 26.684906240718963 27.850420199010646 22.535656079090387 24-25 22.6793190606077 26.84988456460499 28.026990230941394 22.44380614384592 26-27 22.574898979875083 26.955457205678456 27.97809541366396 22.4915484007825 28-29 22.634845751706376 27.0167686034058 27.916855674779583 22.431529970108244 30-31 22.894358669672467 26.775683008589862 27.835043390897802 22.494914930839872 32-33 22.604097807154677 26.995956370968706 27.820347855073045 22.579597966803576 34-35 22.79781430265536 27.0223812307203 27.791226404180385 22.388578062443955 36-37 22.871964593472494 26.905971064744925 27.64399882397195 22.57806551781063 38-39 22.57910744720325 27.158348876783094 27.734563952174835 22.52797972383882 40-41 22.810316690105488 26.917107125351375 27.7076034654239 22.56497271911923 42-43 22.654473725716247 27.114131949061505 27.490956368620413 22.74043795660183 44-45 22.639008141898962 27.142144526523378 27.417507498293002 22.801339833284658 46-47 22.789098999509825 27.106668442965553 27.21761932558948 22.886613231935144 48-49 22.830800754098888 27.30532233177193 27.060963974834067 22.802912939295116 50-51 22.74322125106942 27.338352231968432 27.10145837048813 22.816968146474014 52-53 23.016350502140547 27.240767826624023 26.93014900291047 22.812732668324955 54-55 22.93542878659046 27.173533007289976 26.964569400000492 22.926468806119072 56-57 22.973709012005095 27.394159484094406 26.81460792181289 22.81752358208761 58-59 22.862503134734176 27.373976811766358 26.929827600619465 22.833692452879994 60-61 22.975297483962603 27.340711606015823 26.823966305558223 22.860024604463355 62-63 22.944594614250633 27.425516960793466 26.903744159041004 22.726144265914897 64-65 23.002705347427515 27.272285143876335 26.864938179528476 22.86007132916767 66-67 23.01407280679596 27.328871943818722 26.65582686959846 23.001228379786863 68-69 22.953592080785803 27.293460220947757 26.78394589435744 22.96900180390899 70-71 22.97119005333903 27.132396103905805 26.78248848752261 23.113925355232556 72-73 22.991242365595127 27.193928330984036 26.701412223363945 23.11341708005689 74-75 22.781451025273277 27.27516589113506 26.773294872677774 23.170088210913885 76-77 22.971275958541856 27.28771091759299 26.646026717688304 23.094986406176847 78-79 22.850947451321947 27.287874340038716 26.717052402096776 23.144125806542565 80-81 22.934204877219667 27.220863497097902 26.7166096696955 23.128321955986927 82-83 23.07214341815916 27.149261831941978 26.87540147020801 22.90319327969085 84-85 23.078392629648192 27.139014486570062 26.739015444256108 23.043577439525635 86-87 22.863048661749726 27.305847032622836 26.80419117030385 23.026913135323586 88-89 23.031629175895272 27.090791435400075 26.743790474402317 23.13378891430234 90-91 23.031137611476048 27.19576296481689 26.71655303247642 23.056546391230647 92-93 23.11315742279883 27.156098156637924 26.828582443569548 22.902161976993696 94-95 22.844619348199135 27.25345036280013 26.906740530584607 22.995189758416128 96-97 22.847692838951957 27.292373430061605 26.878484738300312 22.98144899268612 98-99 23.189789364818438 27.86935854497609 26.924398938510034 22.016453151695433 100-101 27.565253375105968 34.85849634916328 27.506762397563072 10.06948787816767 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2696.0 1 2257.0 2 2537.0 3 3469.5 4 4443.5 5 6737.5 6 8885.5 7 10382.5 8 11362.5 9 11107.5 10 9984.5 11 9053.5 12 9832.5 13 13068.5 14 19918.5 15 28614.5 16 35540.0 17 39601.5 18 40603.5 19 39084.0 20 37038.5 21 35758.0 22 36208.5 23 40117.5 24 47960.5 25 59680.0 26 74937.5 27 91587.0 28 109305.5 29 127793.0 30 144070.5 31 159348.0 32 175182.5 33 190181.0 34 204006.0 35 218121.0 36 234514.0 37 248907.5 38 260914.0 39 274104.5 40 286893.5 41 299007.5 42 308499.0 43 317218.5 44 328402.5 45 343095.5 46 359426.5 47 374997.5 48 383245.0 49 383627.5 50 381901.5 51 379965.5 52 367646.0 53 349740.0 54 336619.5 55 321038.5 56 303805.5 57 282675.0 58 257180.0 59 227490.0 60 195540.0 61 166363.5 62 138545.0 63 114106.5 64 92812.0 65 73323.0 66 58894.5 67 44314.5 68 30998.5 69 23385.5 70 17406.0 71 12432.5 72 9159.0 73 6847.0 74 5222.0 75 3866.0 76 2619.5 77 1563.0 78 1136.5 79 901.0 80 602.0 81 374.5 82 275.5 83 180.0 84 102.0 85 67.5 86 49.5 87 39.0 88 32.0 89 20.5 90 11.5 91 6.5 92 2.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001940862279235738 3 0.0 4 0.0033641612840086123 5 2.587816372314317E-4 6 3.4112124907779637E-4 7 0.0 8 0.0 9 0.0 10-11 3.2935844738545857E-4 12-13 5.058004727705256E-4 14-15 2.352560338467561E-5 16-17 0.0 18-19 0.0010410079497718957 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.240287732012658E-5 28-29 0.0 30-31 2.3614409748972922E-5 32-33 0.0010250130437353512 34-35 7.918871695344692E-4 36-37 3.238084284575559E-4 38-39 0.0015021306633203073 40-41 6.121661658943374E-6 42-43 1.8562775842849024E-5 44-45 3.7595622115123436E-5 46-47 2.542411879368658E-5 48-49 0.0 50-51 2.6121270217291745E-5 52-53 6.609895158469923E-6 54-55 0.0032720590646139994 56-57 0.002949750691818253 58-59 0.0014229840801078168 60-61 1.9512933485915182E-4 62-63 7.06090674611034E-6 64-65 6.436871774724936E-5 66-67 5.0768460427580684E-5 68-69 1.6925646224852354E-4 70-71 0.0 72-73 0.0 74-75 1.9961175513625996E-4 76-77 0.0 78-79 3.5539515913884435E-4 80-81 0.0 82-83 9.765894420427127E-5 84-85 3.302364583857068E-5 86-87 0.0016253804667975403 88-89 0.0 90-91 1.125046884165346E-4 92-93 8.803948394776089E-6 94-95 2.6884300455715777E-4 96-97 9.14509377150526E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 252.0 20-21 677.0 22-23 1385.0 24-25 3135.0 26-27 5833.0 28-29 14107.0 30-31 28496.0 32-33 37965.0 34-35 52692.0 36-37 79422.0 38-39 88479.0 40-41 85718.0 42-43 96155.0 44-45 111982.0 46-47 111112.0 48-49 103524.0 50-51 93533.0 52-53 90299.0 54-55 97800.0 56-57 100591.0 58-59 99303.0 60-61 95263.0 62-63 89622.0 64-65 94666.0 66-67 100058.0 68-69 100065.0 70-71 95473.0 72-73 88858.0 74-75 90932.0 76-77 89384.0 78-79 94492.0 80-81 93914.0 82-83 88149.0 84-85 87350.0 86-87 92306.0 88-89 96222.0 90-91 98573.0 92-93 98727.0 94-95 105424.0 96-97 158395.0 98-99 663531.0 100-101 4677512.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.60120482562704 #Duplication Level Percentage of deduplicated Percentage of total 1 91.28645088052119 79.05516630508556 2 6.142272770110606 10.638564445184404 3 1.4119122834642834 3.6681991456832757 4 0.5011036502327758 1.7358471941071196 5 0.23042477886399074 0.9977531735650139 6 0.13034634954587832 0.6772890549177231 7 0.0765467757696993 0.4640330105021152 8 0.048463923241747246 0.3357627314649616 9 0.03551561389742165 0.27681254582746495 >10 0.13283589274250893 1.852142574656078 >50 0.00341636107736419 0.19821132080872203 >100 6.880405172905009E-4 0.08772671627994441 >500 2.2680015337679006E-5 0.012491781917574628 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.352560338467561E-5 2 0.0 5.881400846168903E-5 0.0 0.0 2.352560338467561E-5 3 0.0 5.881400846168903E-5 0.0 0.0 2.352560338467561E-5 4 0.0 1.1762801692337806E-4 0.0 0.0 2.352560338467561E-5 5 0.0 1.1762801692337806E-4 0.0 0.0 2.352560338467561E-5 6 0.0 1.1762801692337806E-4 0.0 0.0 2.352560338467561E-5 7 0.0 1.1762801692337806E-4 0.0 0.0 2.352560338467561E-5 8 0.0 1.4115362030805366E-4 0.0 0.0 4.705120676935122E-5 9 0.0 3.058328440007829E-4 0.0 2.352560338467561E-5 4.705120676935122E-5 10-11 0.0 3.058328440007829E-4 0.0 7.057681015402683E-5 4.705120676935122E-5 12-13 0.0 3.058328440007829E-4 0.0 8.822101269253354E-5 4.705120676935122E-5 14-15 0.0 4.8227486938585E-4 0.0 9.410241353870244E-5 5.293260761552013E-5 16-17 0.0 4.999190719243567E-4 0.0 9.410241353870244E-5 7.645821100019573E-5 18-19 0.0 5.41088877847539E-4 0.0 1.1174661607720916E-4 9.410241353870244E-5 20-21 0.0 5.822586837707214E-4 0.0 1.2939081861571586E-4 9.998381438487134E-5 22-23 0.0 6.351912913862415E-4 0.0 1.7056062453889818E-4 1.2939081861571586E-4 24-25 0.0 6.881238990017616E-4 0.0 2.1173043046208048E-4 1.6467922369272928E-4 26-27 0.0 7.175309032326061E-4 0.0 3.058328440007829E-4 1.6467922369272928E-4 28-29 0.0 7.351751057711128E-4 0.0 9.351427345408556E-4 1.6467922369272928E-4 30-31 0.0 8.116333167713086E-4 0.0 0.002723088591776202 1.6467922369272928E-4 32-33 0.0 8.233961184636463E-4 0.0 0.005910807850399747 1.6467922369272928E-4 34-35 0.0 9.645497387717E-4 0.0 0.010851184561181625 1.6467922369272928E-4 36-37 0.0 0.0011174661607720915 0.0 0.0180617819985847 1.6467922369272928E-4 38-39 0.0 0.001205687173464625 0.0 0.027901365614225272 1.7056062453889818E-4 40-41 0.0 0.0013586035954650166 0.0 0.03852317554240631 1.8820482707740488E-4 42-43 0.0 0.001388010599695861 0.0 0.04801575650812292 1.8820482707740488E-4 44-45 0.0 0.0015174014183115768 0.0 0.059219825120074676 1.8820482707740488E-4 46-47 0.0 0.0016115038318502792 0.0 0.07127081545387476 1.8820482707740488E-4 48-49 0.0 0.0016115038318502792 0.0 0.08302185434452022 1.8820482707740488E-4 50-51 0.0 0.0018055900597738531 0.0 0.09417299034885646 1.8820482707740488E-4 52-53 0.0 0.001811471460620022 0.0 0.10411255777888191 1.9996762876974268E-4 54-55 0.0 0.0018232342623123597 0.0 0.11476377471129379 2.2349323215441828E-4 56-57 0.0 0.0018467598656970354 0.0 0.12479744455485794 2.2349323215441828E-4 58-59 0.0 0.001864404068235542 0.0 0.13408417649095863 2.2349323215441828E-4 60-61 0.0 0.0018938110724663866 0.0 0.14280041254498094 2.2349323215441828E-4 62-63 0.0 0.0019173366758510621 0.0 0.15059915006700092 2.2349323215441828E-4 64-65 0.0 0.0021525927096978184 0.0 0.15872724603640634 2.2937463300058718E-4 66-67 0.0 0.002176118313082494 0.0 0.16707295383712 2.41137434692925E-4 68-69 0.0 0.0022114067181595075 0.0 0.1751304729963714 2.470188355390939E-4 70-71 0.0 0.002229050920698014 0.0 0.18263514047608292 2.470188355390939E-4 72-73 0.0 0.002234932321544183 0.0 0.18851654132225182 2.705444389237695E-4 74-75 0.0 0.002276102127467365 0.0 0.1934039854254182 2.705444389237695E-4 76-77 0.0 0.0023290347350828854 0.0 0.19789737567189125 2.705444389237695E-4 78-79 0.0 0.002340797536775223 0.0 0.20186143984220906 2.705444389237695E-4 80-81 0.0 0.002340797536775223 0.0 0.2033729598596745 2.7642583976993844E-4 82-83 0.0 0.002340797536775223 0.0 0.20413754196967643 3.058328440007829E-4 84-85 0.0 0.002340797536775223 0.0 0.20481978446783203 3.058328440007829E-4 86-87 0.0 0.0023819673426984057 0.0 0.20506680330337113 3.117142448469518E-4 88-89 0.0 0.0024937139587756147 0.0 0.20514326151437132 3.2935844738545857E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8505 0.0 45.577053 1 GTATCAA 15090 0.0 35.07823 1 TCAACGC 17630 0.0 29.238478 4 ATCAACG 18095 0.0 28.441946 3 CAACGCA 18185 0.0 28.344461 5 AACGCAG 18695 0.0 27.592842 6 TATCAAC 18865 0.0 27.476107 2 GTACATG 23370 0.0 23.677963 1 ACGCAGA 22085 0.0 23.357676 7 TACATGG 23540 0.0 23.143723 2 ACATGGG 23500 0.0 22.43741 3 CGCAGAG 24680 0.0 20.90171 8 CATGGGG 18860 0.0 19.861843 4 GCAGAGT 27425 0.0 18.735405 9 GAGTACT 15825 0.0 17.649538 12-13 AGAGTAC 24170 0.0 17.072464 10-11 CAGAGTA 25965 0.0 17.068258 10-11 GTGGTAT 4605 0.0 16.711514 1 TGGTATC 4180 0.0 16.1702 2 ATGGGGG 11100 0.0 15.882276 5 >>END_MODULE