##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140189_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6424725 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.48529828124939 34.0 31.0 34.0 31.0 34.0 2 32.69074909821043 34.0 31.0 34.0 31.0 34.0 3 32.800162964173566 34.0 31.0 34.0 31.0 34.0 4 36.25703216869204 37.0 37.0 37.0 35.0 37.0 5 36.097301440917704 37.0 35.0 37.0 35.0 37.0 6 36.14167049951554 37.0 36.0 37.0 35.0 37.0 7 36.12918965403188 37.0 35.0 37.0 35.0 37.0 8 36.09953562214725 37.0 35.0 37.0 35.0 37.0 9 37.977134274229634 39.0 38.0 39.0 35.0 39.0 10-11 37.86030149150353 39.0 38.0 39.0 35.0 39.0 12-13 37.886827451758634 39.0 38.0 39.0 35.0 39.0 14-15 39.261571973897716 40.0 39.0 41.0 36.0 41.0 16-17 39.23645315558254 40.0 39.0 41.0 36.0 41.0 18-19 39.26436835817876 40.0 39.0 41.0 36.0 41.0 20-21 39.26154887728814 40.0 39.0 41.0 36.0 41.0 22-23 39.225307415406995 40.0 39.0 41.0 36.0 41.0 24-25 39.23467587077032 40.0 39.0 41.0 36.0 41.0 26-27 39.1138924751953 40.0 39.0 41.0 36.0 41.0 28-29 39.03258564493404 40.0 39.0 41.0 36.0 41.0 30-31 38.942259862641336 40.0 38.0 41.0 35.0 41.0 32-33 38.866321617915276 40.0 38.0 41.0 35.0 41.0 34-35 38.80941535649518 40.0 38.0 41.0 35.0 41.0 36-37 38.78415788186274 40.0 38.0 41.0 35.0 41.0 38-39 38.72208686774977 40.0 38.0 41.0 35.0 41.0 40-41 38.702040035157424 40.0 38.0 41.0 35.0 41.0 42-43 38.674534083908064 40.0 38.0 41.0 35.0 41.0 44-45 38.61465770157774 40.0 38.0 41.0 35.0 41.0 46-47 38.53893924321078 40.0 38.0 41.0 34.0 41.0 48-49 38.50255115803145 40.0 38.0 41.0 34.0 41.0 50-51 38.428531282944554 40.0 38.0 41.0 34.0 41.0 52-53 38.25707076843607 40.0 37.5 41.0 34.0 41.0 54-55 38.108188398400074 40.0 37.0 41.0 33.5 41.0 56-57 37.961028149930186 40.0 37.0 41.0 33.0 41.0 58-59 37.788929467119395 39.0 36.5 41.0 33.0 41.0 60-61 37.647575639763005 39.0 36.0 41.0 33.0 41.0 62-63 37.433637388904785 39.0 35.5 40.5 33.0 41.0 64-65 37.19363258213846 39.0 35.0 40.0 33.0 41.0 66-67 36.950900810201595 38.0 35.0 40.0 32.5 41.0 68-69 36.66517168920889 37.0 35.0 40.0 32.0 41.0 70-71 36.35531805171383 37.0 35.0 39.5 32.0 41.0 72-73 36.03958800302358 36.5 35.0 39.0 32.0 41.0 74-75 35.64074225959489 36.0 34.5 39.0 31.0 40.0 76-77 33.68378130979545 34.5 32.0 36.5 29.0 39.0 78-79 34.79697945258599 35.0 34.0 37.0 30.5 39.0 80-81 34.77471273203723 35.0 34.0 37.0 31.0 39.0 82-83 34.52081586250141 35.0 34.0 36.0 31.0 38.5 84-85 34.22593254849267 35.0 34.0 36.0 31.0 37.0 86-87 34.06571781462297 35.0 34.0 35.5 31.0 37.0 88-89 33.89353200483233 35.0 34.0 35.0 31.0 36.5 90-91 33.74093997921922 35.0 34.0 35.0 30.0 36.0 92-93 33.67548373372218 35.0 34.0 35.0 30.0 36.0 94-95 33.616183951078845 35.0 34.0 35.0 30.0 36.0 96-97 33.637870482658045 35.0 34.0 35.0 31.0 35.5 98-99 33.67301095118728 35.0 34.0 35.0 31.0 35.0 100-101 32.42057949861892 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 3.0 20 32.0 21 80.0 22 362.0 23 1254.0 24 3274.0 25 7463.0 26 14051.0 27 23253.0 28 35211.0 29 51601.0 30 69279.0 31 93500.0 32 126131.0 33 175205.0 34 263487.0 35 419981.0 36 783106.0 37 1529283.0 38 1911790.0 39 899577.0 40 16798.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.65175552260992 19.864040873344774 12.790710886458175 24.693492717587134 2 15.354178304869578 21.52178119021518 39.71440725598142 23.409633248933826 3 18.312363564199245 25.86467125052045 30.472572756032356 25.350392429247943 4 12.701138126949274 17.523799117223543 38.64333163203442 31.131731123792765 5 13.18270028770179 37.83129132094408 35.843667914557365 13.142340476796765 6 30.565948164156953 37.66513793240312 18.63978190438316 13.129131999056767 7 26.80237675542533 32.37844421356556 23.400254485600552 17.418924545408558 8 24.949472545517512 36.09606636859943 21.413974917214357 17.540486168668696 9 25.92300837779049 16.061138803606383 21.06222445318671 36.95362836541642 10-11 24.369916497320343 26.269747213256828 29.377734756340523 19.982601533082303 12-13 25.007778574529326 23.919229523437597 29.23821022587984 21.834781676153234 14-15 22.140036231912255 25.422761417107008 26.44191819631757 25.995284154663167 16-17 22.07768425885933 28.513780745479377 27.14728645973174 22.261248535929553 18-19 22.098179993957647 27.94488850674955 28.49522207361056 21.461709425682244 20-21 22.78487317666823 27.244860800547162 28.23890412101795 21.73136190176666 22-23 22.556181233587107 27.14269602516425 28.07678947077975 22.224333270468893 24-25 22.29373555743681 27.250385096092238 28.18478321966647 22.27109612680448 26-27 22.2966684857873 27.396151434432564 28.060077244218384 22.247102835561748 28-29 22.27280491192253 27.54594636902674 28.025840932235614 22.155407786815115 30-31 22.439972515645128 27.395813620819975 27.941672160776914 22.222541702757983 32-33 22.258924668020807 27.533839610573345 27.946522475946573 22.260713245459268 34-35 22.348201580924798 27.527817925970393 27.96029848067111 22.163682012433696 36-37 22.399370843218886 27.447123550392632 27.891210373265352 22.262295233123126 38-39 22.24824610078515 27.6050812442252 27.9557726769154 22.19089997807425 40-41 22.439495493854295 27.428132028462947 27.852782839276397 22.279589638406357 42-43 22.279385738270598 27.57029462418527 27.696900372945443 22.45341926459869 44-45 22.416111929015383 27.61504370256212 27.56607233896326 22.402772029459236 46-47 22.45523629366296 27.572986030309664 27.416706446744605 22.55507122928277 48-49 22.429500875692884 27.626932474654435 27.41403695107539 22.529529698577292 50-51 22.421476599502945 27.718790245447572 27.370414618973644 22.489318536075835 52-53 22.581146962927846 27.634155734041265 27.18004863147845 22.60464867155244 54-55 22.549771683932487 27.527199965157088 27.244997470124982 22.678030880785442 56-57 22.55058026646526 27.632873362242062 27.226492195626147 22.590054175666534 58-59 22.52826464876636 27.654539929422985 27.234387187068066 22.582808234742593 60-61 22.57855488551444 27.621042265073864 27.23767740406928 22.562725445342416 62-63 22.596184197815955 27.701066084944515 27.158848634344885 22.543901082894646 64-65 22.58526171072536 27.653845063362237 27.109793734002245 22.65109949191016 66-67 22.613289205702646 27.65558906470312 27.034221760927462 22.69689996866677 68-69 22.55754024350136 27.60280305310827 27.131780940695265 22.707875762695103 70-71 22.543251066912543 27.453090311951016 27.14207719528891 22.861581425847533 72-73 22.604554156580768 27.481828961631198 27.115206158745835 22.7984107230422 74-75 22.447385156242188 27.63829550493247 27.1443606622415 22.769958676583844 76-77 22.63320909245189 27.543524160950838 27.02444429114772 22.79882245544955 78-79 22.55027472610158 27.554808706446167 26.971378523508978 22.923538043943278 80-81 22.59610877083709 27.540712572461985 27.0365902298568 22.826588426844125 82-83 22.611997362572524 27.522795353222453 27.13865555179373 22.726551732411302 84-85 22.76328483441613 27.490699069703815 27.00096970747609 22.74504638840396 86-87 22.5956626362308 27.511727719626638 27.1072045474878 22.785405096654763 88-89 22.631959769864807 27.41638859694988 27.08321835013926 22.868433283046052 90-91 22.65835761848419 27.48534544753368 27.059457819279984 22.79683911470215 92-93 22.718031599935077 27.437360951897844 27.108250940846013 22.73635650732107 94-95 22.622981361095313 27.48000330656415 27.133603698416675 22.763411633923866 96-97 22.59635768930716 27.451073617272108 27.148615487601653 22.80395320581908 98-99 22.892574043699078 28.018242675311413 27.222970451006788 21.86621282998272 100-101 27.181648439950195 35.02284726791514 27.771373855598124 10.02413043653654 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1160.0 1 1089.0 2 1532.0 3 2138.5 4 2747.5 5 4361.0 6 5794.0 7 6674.0 8 7122.5 9 6823.0 10 6242.0 11 5721.0 12 6166.0 13 8040.5 14 12127.5 15 17565.5 16 21987.0 17 24755.5 18 26078.0 19 26094.0 20 25682.0 21 25796.5 22 27170.0 23 31305.0 24 38526.0 25 48554.5 26 61243.0 27 75732.5 28 91705.0 29 108347.5 30 123020.0 31 136251.0 32 149756.5 33 162311.5 34 174049.5 35 185875.5 36 199211.0 37 212601.0 38 223885.5 39 232993.5 40 242249.5 41 252850.5 42 260823.5 43 267640.5 44 275179.0 45 282095.0 46 286413.5 47 288853.5 48 290549.0 49 288939.0 50 285638.5 51 280828.5 52 271691.5 53 258611.5 54 244875.5 55 230611.0 56 214346.5 57 196173.5 58 176785.5 59 155419.0 60 131346.5 61 108170.5 62 88105.5 63 70096.0 64 53937.0 65 41702.0 66 32624.5 67 25191.5 68 19305.0 69 14493.5 70 10676.5 71 7781.5 72 5764.5 73 4164.0 74 2895.5 75 2019.0 76 1407.0 77 976.0 78 699.5 79 492.0 80 336.5 81 232.5 82 161.5 83 115.0 84 81.0 85 55.0 86 42.0 87 30.5 88 17.5 89 10.5 90 8.0 91 4.5 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018989139612979543 3 0.0 4 0.003455400814820868 5 2.646027650988953E-4 6 3.112973707045827E-4 7 0.0 8 0.0 9 0.0 10-11 3.268622392398118E-4 12-13 4.046865819159575E-4 14-15 3.112973707045827E-5 16-17 0.0 18-19 0.0011829300086774143 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.673063519472617E-5 28-29 0.0 30-31 7.032039456304587E-5 32-33 9.413476851201407E-4 34-35 6.309400043881878E-4 36-37 3.5769094754955073E-4 38-39 0.0015431374427512083 40-41 0.0 42-43 0.0 44-45 3.337059438284465E-5 46-47 2.541406285473796E-5 48-49 1.7197422106426247E-5 50-51 3.4884644764865725E-5 52-53 8.838550788787626E-6 54-55 0.0029303750942850427 56-57 0.0027285367839500916 58-59 0.0014496730756374775 60-61 1.312089234064161E-4 62-63 0.0 64-65 1.0608097623815064E-4 66-67 4.895814617042037E-5 68-69 1.5916916877283953E-4 70-71 0.0 72-73 0.0 74-75 1.5627528078240158E-4 76-77 2.116058620748759E-5 78-79 2.9022549553584816E-4 80-81 0.0 82-83 1.4440072311439037E-4 84-85 2.257232907837406E-5 86-87 0.0013189926337128783 88-89 0.0 90-91 1.425682554433451E-4 92-93 0.0 94-95 2.3442004296302495E-4 96-97 1.2611353522344735E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 172.0 20-21 490.0 22-23 995.0 24-25 2433.0 26-27 4689.0 28-29 11144.0 30-31 23834.0 32-33 31564.0 34-35 43559.0 36-37 65853.0 38-39 74218.0 40-41 71602.0 42-43 78825.0 44-45 90205.0 46-47 89068.0 48-49 83498.0 50-51 77039.0 52-53 75849.0 54-55 81545.0 56-57 82717.0 58-59 80717.0 60-61 77279.0 62-63 73873.0 64-65 77059.0 66-67 80504.0 68-69 79307.0 70-71 76625.0 72-73 72847.0 74-75 73353.0 76-77 73345.0 78-79 75927.0 80-81 75383.0 82-83 71512.0 84-85 70235.0 86-87 73385.0 88-89 76326.0 90-91 77671.0 92-93 77394.0 94-95 83374.0 96-97 120874.0 98-99 480809.0 100-101 3387627.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.98861007237477 #Duplication Level Percentage of deduplicated Percentage of total 1 91.50149900673897 80.51089717141743 2 6.1689709354459525 10.85598356373534 3 1.3618047619355884 3.59469924577961 4 0.4557371354575763 1.603987084291109 5 0.2042209952913304 0.898456076164058 6 0.10378410430595979 0.547909145129266 7 0.06336960441356136 0.39030623892298427 8 0.03819552536900686 0.26886169505624347 9 0.02389459085986021 0.18922066542064536 >10 0.0771641478206923 1.028088405538611 >50 0.0011210500245074 0.06178579191217207 >100 2.124717590630207E-4 0.036907634155959684 >500 2.5670577935285955E-5 0.012897282476720992 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.225947414091654E-5 2 0.0 1.5564868535229135E-5 0.0 0.0 6.225947414091654E-5 3 0.0 1.5564868535229135E-5 0.0 0.0 6.225947414091654E-5 4 0.0 6.225947414091654E-5 0.0 0.0 6.225947414091654E-5 5 0.0 6.225947414091654E-5 0.0 0.0 6.225947414091654E-5 6 0.0 6.225947414091654E-5 0.0 1.5564868535229135E-5 6.225947414091654E-5 7 0.0 6.225947414091654E-5 0.0 1.5564868535229135E-5 6.225947414091654E-5 8 0.0 6.225947414091654E-5 0.0 1.5564868535229135E-5 7.782434267614567E-5 9 1.5564868535229135E-5 1.2451894828183308E-4 0.0 1.5564868535229135E-5 1.400838168170622E-4 10-11 1.5564868535229135E-5 1.2451894828183308E-4 0.0 1.5564868535229135E-5 1.5564868535229134E-4 12-13 1.5564868535229135E-5 1.2451894828183308E-4 0.0 1.5564868535229135E-5 1.712135538875205E-4 14-15 1.5564868535229135E-5 2.0234329095797875E-4 0.0 1.5564868535229135E-5 2.0234329095797875E-4 16-17 1.5564868535229135E-5 2.0234329095797875E-4 0.0 1.5564868535229135E-5 2.1790815949320787E-4 18-19 1.5564868535229135E-5 2.4903789656366616E-4 0.0 4.66946056056874E-5 2.4903789656366616E-4 20-21 1.5564868535229135E-5 2.9573250216935357E-4 0.0 6.225947414091654E-5 2.568203308312807E-4 22-23 1.5564868535229135E-5 3.346446735074264E-4 0.0 8.560677694376023E-5 2.646027650988953E-4 24-25 1.5564868535229135E-5 3.8133927911311377E-4 0.0 1.634311196199059E-4 2.646027650988953E-4 26-27 1.5564868535229135E-5 4.202514504511866E-4 0.0 2.2569059376082243E-4 2.646027650988953E-4 28-29 1.5564868535229135E-5 4.202514504511866E-4 0.0 8.09373163831915E-4 2.646027650988953E-4 30-31 1.5564868535229135E-5 4.66946056056874E-4 0.0 0.0027705465992707862 2.646027650988953E-4 32-33 1.5564868535229135E-5 4.66946056056874E-4 0.0 0.0064672028763877055 2.646027650988953E-4 34-35 1.5564868535229135E-5 6.225947414091654E-4 0.0 0.011191140476829748 2.9573250216935357E-4 36-37 1.5564868535229135E-5 7.938082952966859E-4 0.0 0.017712820393090755 2.9573250216935357E-4 38-39 1.5564868535229135E-5 8.249380323671441E-4 0.0 0.027721030861243088 2.9573250216935357E-4 40-41 1.5564868535229135E-5 8.560677694376024E-4 0.0 0.037449073695761295 2.9573250216935357E-4 42-43 1.5564868535229135E-5 8.716326379728315E-4 0.0 0.046865819159574926 3.112973707045827E-4 44-45 1.5564868535229135E-5 9.805867177194354E-4 0.0 0.05790131095105238 3.268622392398118E-4 46-47 1.5564868535229135E-5 0.0010739759289308103 0.0 0.06941153123285432 3.268622392398118E-4 48-49 1.5564868535229135E-5 0.0010739759289308103 0.0 0.08047815276140224 3.268622392398118E-4 50-51 1.5564868535229135E-5 0.0012374070485507162 0.0 0.0909299619828086 3.42427107775041E-4 52-53 1.5564868535229135E-5 0.0012451894828183307 0.0 0.10138177120421496 3.7355684484549926E-4 54-55 1.5564868535229135E-5 0.0012529719170859452 0.0 0.11232387378448105 4.046865819159575E-4 56-57 1.5564868535229135E-5 0.001276319219888789 0.0 0.12310254524512722 4.202514504511866E-4 58-59 1.5564868535229135E-5 0.001276319219888789 0.0 0.13364774367774496 4.3581631898641573E-4 60-61 1.5564868535229135E-5 0.0012918840884240182 0.0 0.14311118374716428 4.3581631898641573E-4 62-63 1.5564868535229135E-5 0.0013230138254944764 0.0 0.1521465899318648 4.3581631898641573E-4 64-65 1.5564868535229135E-5 0.001385273299635393 0.0 0.16125982045924145 4.3581631898641573E-4 66-67 1.5564868535229135E-5 0.0014086206024382366 0.0 0.1702485320383363 4.5916362178925947E-4 68-69 1.5564868535229135E-5 0.0014164030367058511 0.0 0.17918276657755777 4.747284903244886E-4 70-71 1.5564868535229135E-5 0.0014164030367058511 0.0 0.18787574565448328 4.980757931273323E-4 72-73 1.5564868535229135E-5 0.0014164030367058511 0.0 0.19469315807291362 5.136406616625614E-4 74-75 1.5564868535229135E-5 0.0014397503395086949 0.0 0.200117514757441 5.136406616625614E-4 76-77 1.5564868535229135E-5 0.001494227379381997 0.0 0.20527726867686946 5.136406616625614E-4 78-79 1.5564868535229135E-5 0.001509792247917226 0.0 0.21020354956826948 5.292055301977906E-4 80-81 1.5564868535229135E-5 0.001509792247917226 0.0 0.21218028787224355 5.292055301977906E-4 82-83 1.5564868535229135E-5 0.001509792247917226 0.0 0.21288848939059649 5.447703987330197E-4 84-85 1.5564868535229135E-5 0.001525357116452455 0.0 0.21352664900054086 5.447703987330197E-4 86-87 1.5564868535229135E-5 0.0015564868535229135 0.0 0.21384572880551309 5.447703987330197E-4 88-89 1.5564868535229135E-5 0.0015876165905933718 0.0 0.213907988279654 5.447703987330197E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5640 0.0 41.137794 1 GTATCAA 9455 0.0 31.68393 1 TCAACGC 11100 0.0 26.372175 4 ATCAACG 11210 0.0 26.077524 3 CAACGCA 11215 0.0 25.957932 5 AACGCAG 11625 0.0 25.076818 6 TATCAAC 12185 0.0 24.38727 2 GTACATG 15515 0.0 22.755535 1 TACATGG 15610 0.0 22.153372 2 ACATGGG 15740 0.0 21.68905 3 ACGCAGA 13880 0.0 20.945127 7 CGCAGAG 14435 0.0 20.139822 8 CATGGGG 12540 0.0 19.624176 4 GCAGAGT 17495 0.0 16.548275 9 AGAGTAC 15365 0.0 16.473934 10-11 GAGTACT 9715 0.0 15.91505 12-13 ATGGGGG 7880 0.0 15.51237 5 CAGAGTA 17060 0.0 15.084645 10-11 GAGTACA 11145 0.0 14.720563 1 GTGGTAT 3110 0.0 14.4811125 1 >>END_MODULE