##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140187_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12925525 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.8601774396011 31.0 31.0 34.0 30.0 34.0 2 32.00526137236205 33.0 31.0 34.0 30.0 34.0 3 32.07207397765274 33.0 31.0 34.0 30.0 34.0 4 35.77165260211868 37.0 35.0 37.0 35.0 37.0 5 35.633671282210976 37.0 35.0 37.0 33.0 37.0 6 35.63390160167575 37.0 35.0 37.0 33.0 37.0 7 35.51508592494309 37.0 35.0 37.0 33.0 37.0 8 35.51016736264098 37.0 35.0 37.0 33.0 37.0 9 37.11571715655651 39.0 37.0 39.0 33.0 39.0 10-11 36.98673817891343 39.0 37.0 39.0 33.0 39.0 12-13 36.94807348250845 39.0 37.0 39.0 33.0 39.0 14-15 38.10883198167966 40.0 37.0 41.0 33.0 41.0 16-17 38.107299316662186 40.0 37.0 41.0 33.0 41.0 18-19 38.13738997062015 40.0 37.0 41.0 33.0 41.0 20-21 38.12467196712088 40.0 37.0 41.0 33.0 41.0 22-23 38.037776999279515 40.0 37.0 41.0 33.0 41.0 24-25 37.94157528060303 40.0 37.0 41.0 33.0 41.0 26-27 37.77679339224366 40.0 37.0 41.0 32.0 41.0 28-29 37.64684194599277 40.0 37.0 41.0 32.0 41.0 30-31 37.510465322692994 39.0 36.5 41.0 32.0 41.0 32-33 37.65947789807768 39.5 37.0 41.0 32.0 41.0 34-35 37.62305608335106 40.0 37.0 41.0 32.0 41.0 36-37 37.49359447606483 39.5 36.0 41.0 31.5 41.0 38-39 37.33667882392404 39.0 36.0 41.0 31.0 41.0 40-41 37.27640856475294 39.0 36.0 41.0 31.0 41.0 42-43 37.16707490315912 39.0 36.0 40.0 31.0 41.0 44-45 37.23118152226522 39.0 36.0 40.5 31.0 41.0 46-47 37.38637612503107 39.0 36.0 41.0 31.0 41.0 48-49 37.31574828330802 39.0 36.0 41.0 31.0 41.0 50-51 37.17836098017638 39.0 36.0 41.0 31.0 41.0 52-53 37.04215712666662 39.0 35.5 41.0 31.0 41.0 54-55 36.91277201213639 39.0 35.0 40.0 31.0 41.0 56-57 36.76433107457502 39.0 35.0 40.0 30.0 41.0 58-59 36.63023987659716 38.5 35.0 40.0 30.0 41.0 60-61 36.396848075318545 38.0 35.0 40.0 30.0 41.0 62-63 36.137896268485015 38.0 34.0 40.0 29.0 41.0 64-65 35.91672142631863 37.5 34.0 40.0 29.0 41.0 66-67 35.664504537257095 37.0 34.0 40.0 29.0 41.0 68-69 35.38561160120959 36.5 34.0 39.0 29.0 41.0 70-71 35.081758029955665 36.0 34.0 39.0 29.0 40.5 72-73 34.75970118852994 36.0 33.0 39.0 28.0 40.0 74-75 34.423622500658595 35.0 33.0 38.0 28.0 40.0 76-77 33.293195215579615 34.5 31.5 36.5 26.5 39.0 78-79 33.67777611249187 35.0 32.0 37.0 28.0 39.0 80-81 33.557526260099564 35.0 32.0 36.0 28.0 39.0 82-83 33.31907150377757 35.0 32.0 36.0 27.5 37.5 84-85 33.10129966329774 35.0 32.0 35.5 27.0 37.0 86-87 32.88222987375553 34.0 32.0 35.0 27.0 37.0 88-89 32.65216859628551 34.0 32.0 35.0 27.0 36.0 90-91 32.51551214154095 34.0 32.0 35.0 27.0 36.0 92-93 32.43952547506152 34.0 31.0 35.0 27.0 36.0 94-95 32.40189604868297 34.0 31.0 35.0 27.0 35.0 96-97 32.30446793462647 34.0 31.0 35.0 27.0 35.0 98-99 32.462637398979126 34.0 31.0 35.0 27.0 35.0 100-101 31.712872543527283 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 1.0 16 0.0 17 0.0 18 3.0 19 24.0 20 115.0 21 639.0 22 3060.0 23 10711.0 24 27318.0 25 56974.0 26 100927.0 27 156881.0 28 221391.0 29 291116.0 30 363370.0 31 446418.0 32 547490.0 33 683272.0 34 884148.0 35 1178810.0 36 1694207.0 37 2480148.0 38 2562777.0 39 1172571.0 40 43153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.03327911245384 22.346426934302475 15.602058717150754 24.018235236092924 2 13.784783077787349 22.638173515642585 41.238179658742304 22.338863747827766 3 16.63906108262527 27.71581038294383 31.980426326977046 23.664702207453857 4 11.833376207155997 19.37267538455885 39.82779036054628 28.966158047738872 5 12.221205715048326 38.84137007974531 36.6504648747343 12.286959330472069 6 28.835223327485732 39.86587005170003 18.8905518344516 12.408354786362642 7 25.140479787087948 33.39592782498196 24.425352161711032 17.038240226219052 8 23.803706232435434 37.85191704012023 21.429257225528556 16.915119501915783 9 25.22682831064889 16.385848930701073 21.55243984286905 36.83488291578099 10-11 23.542188808578373 27.218403120956403 29.98885925329919 19.25054881716603 12-13 24.263741704882396 24.876668452538677 29.923442181265365 20.936147661313566 14-15 21.505288953446765 26.31707029308287 27.173971656857265 25.003669096613095 16-17 21.156649343063435 29.4376321271283 27.843936706632803 21.561781823175462 18-19 21.2098282369848 28.74059732641162 29.382150224217412 20.667424212386162 20-21 22.0427878109684 27.81880456588286 29.197836187193875 20.940571435954862 22-23 21.772361510801108 27.737500976924462 29.03396292407227 21.456174588202156 24-25 21.5502583154982 27.936286008393296 29.0600320519655 21.453423624143007 26-27 21.558368864044116 28.018791512800483 28.949582634730564 21.473256988424836 28-29 21.539370939624003 28.07914763843312 28.94385048229176 21.437630939651118 30-31 21.809700547650714 27.968252375220043 28.819092224982366 21.40295485214687 32-33 21.635726516283214 28.109359376381022 28.75598650729544 21.49892760004033 34-35 21.7190338733799 28.085212891876843 28.835784829728606 21.35996840501465 36-37 21.708802744413557 28.04957369698777 28.76683510753553 21.474788451063137 38-39 21.59279632836575 28.11874093877317 28.82503799972672 21.46342473313436 40-41 21.737747612417504 27.96539129714451 28.731620093256026 21.565240997181956 42-43 21.662321099135546 28.129689737479712 28.491176947709373 21.71681221567537 44-45 21.702327297854882 28.16867261039001 28.37156321517162 21.757436876583487 46-47 21.793890297897548 28.110298518353943 28.187524220983228 21.908286962765285 48-49 21.768841990378192 28.238244079011054 28.14082350305187 21.852090427558878 50-51 21.762842941612142 28.29530269707797 28.03117872883693 21.91067563247296 52-53 21.84826428364005 28.203125564221814 27.959029035452993 21.989581116685144 54-55 21.81680661370082 28.1268823554153 28.00262492549997 22.053686105383903 56-57 21.8798353099912 28.157603762510252 27.968306474806298 21.99425445269225 58-59 21.798347014877972 28.17930098427444 28.01534022182276 22.007011779024825 60-61 21.9360200180675 28.141774723170514 27.980899025335475 21.941306233426513 62-63 21.910260884932296 28.23040933088869 27.921314807042346 21.93801497713667 64-65 21.804708813719248 28.161492505423453 27.91691954055241 22.116879140304896 66-67 21.881710733795025 28.252254584904286 27.748980507888938 22.117054173411752 68-69 21.84634637919428 28.218646742470128 27.747915233680086 22.187091644655503 70-71 21.853049010579078 28.030470638969824 27.81299976649107 22.303480583960027 72-73 21.877900138912253 28.05440551665687 27.73988507624346 22.32780926818742 74-75 21.811580620984422 28.108000986576403 27.74451968986355 22.33589870257563 76-77 21.98123949072045 28.040642911116382 27.669080357496988 22.30903724066618 78-79 21.90625926400639 28.047754896309968 27.616106258988786 22.429879580694852 80-81 22.000201448159583 28.03765372719295 27.585888501489862 22.3762563231576 82-83 21.984705482282603 28.005687663687723 27.732380915493337 22.27722593853634 84-85 22.07669451972169 28.028334203434973 27.68154207703709 22.21342919980624 86-87 21.942877918525163 28.036592314835097 27.697625505779033 22.322904260860703 88-89 21.962109157430653 27.977562756002488 27.74047682647676 22.3198512600901 90-91 22.004571350483594 27.97136689950189 27.79761912558214 22.226442624432373 92-93 22.096606745761076 27.894208893086496 27.7779983811621 22.23118597999032 94-95 21.899680902762682 27.91956308877317 27.912486312401942 22.268269696062205 96-97 21.792767914609783 27.928114890528576 28.048143755476158 22.230973439385483 98-99 21.90767643501633 28.52813570944389 28.155645621700177 21.4085422338396 100-101 22.239039804945225 31.382780778924523 25.432630210845826 20.94554920528443 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2220.0 1 2071.0 2 2848.0 3 3991.5 4 5280.5 5 8126.0 6 10560.0 7 12594.5 8 14236.5 9 14453.0 10 13679.5 11 12915.0 12 14331.0 13 18873.0 14 29600.5 15 44645.0 16 56937.5 17 63250.0 18 64757.0 19 63499.5 20 60534.5 21 57849.0 22 58088.0 23 63969.5 24 76807.5 25 97267.5 26 124715.0 27 156895.0 28 196478.5 29 243152.0 30 290243.0 31 336231.5 32 377063.0 33 412069.5 34 443721.5 35 467656.0 36 488611.0 37 505543.5 38 513018.0 39 513714.5 40 511868.0 41 510417.0 42 506014.0 43 502688.5 44 502003.5 45 501810.0 46 501480.5 47 500029.5 48 497265.0 49 491760.5 50 483239.0 51 469050.0 52 446439.0 53 418973.0 54 392064.5 55 363831.5 56 335918.0 57 305279.0 58 270254.5 59 232707.0 60 194006.0 61 158643.0 62 127025.5 63 99438.0 64 75196.0 65 57137.5 66 44339.0 67 33668.0 68 25292.0 69 18749.5 70 13431.0 71 9407.0 72 6542.5 73 4510.5 74 3127.5 75 2150.0 76 1434.5 77 912.0 78 613.0 79 431.0 80 299.0 81 209.5 82 168.5 83 117.5 84 82.5 85 64.5 86 48.0 87 37.5 88 25.0 89 14.0 90 10.0 91 9.0 92 7.5 93 3.5 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003512429862616799 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 9.670787066676208E-5 20-21 0.0018336667009028486 22-23 2.9791271134343663E-4 24-25 4.2569784647973425E-5 26-27 3.406941201343992E-4 28-29 0.003470621594912534 30-31 3.0247855582156435E-4 32-33 5.4414813764522534E-5 34-35 0.0022845802606183663 36-37 0.055847131195801786 38-39 0.03335804109535634 40-41 0.04224705927838387 42-43 7.960976334137618E-4 44-45 0.0024906067392508322 46-47 0.0013623320808443752 48-49 5.769374765850955E-4 50-51 0.0 52-53 9.657284796435774E-4 54-55 0.0025032145764853193 56-57 0.0011375498314181085 58-59 0.003949144012233533 60-61 0.00141546242414716 62-63 9.277863666741612E-5 64-65 7.997773134005594E-4 66-67 3.5735416783522987E-4 68-69 1.3291009260121137E-4 70-71 0.0011661372511952094 72-73 0.0017287773502468993 74-75 6.446609656352728E-4 76-77 0.001046043898297607 78-79 1.3760839364021184E-4 80-81 0.00221717897233455 82-83 0.0024720857357911925 84-85 0.004070455089260592 86-87 0.003930519127118289 88-89 0.07004522145586389 90-91 7.040017917664207E-4 92-93 6.14338161212163E-5 94-95 4.0143772052192636E-5 96-97 0.00794739431273288 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 365.0 20-21 1346.0 22-23 2637.0 24-25 4887.0 26-27 6169.0 28-29 10267.0 30-31 27587.0 32-33 35825.0 34-35 50803.0 36-37 79466.0 38-39 87518.0 40-41 95001.0 42-43 106643.0 44-45 125841.0 46-47 127772.0 48-49 119488.0 50-51 110848.0 52-53 100686.0 54-55 111418.0 56-57 117757.0 58-59 125640.0 60-61 130002.0 62-63 124331.0 64-65 134174.0 66-67 143035.0 68-69 146522.0 70-71 149336.0 72-73 143306.0 74-75 146306.0 76-77 146677.0 78-79 160478.0 80-81 163677.0 82-83 157986.0 84-85 161703.0 86-87 172068.0 88-89 186090.0 90-91 205832.0 92-93 222300.0 94-95 291624.0 96-97 365159.0 98-99 1112972.0 100-101 7013983.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.52934242789964 #Duplication Level Percentage of deduplicated Percentage of total 1 89.84555998722806 75.94586105786799 2 6.936715582418908 11.7271201358247 3 1.7369876981496093 4.404792837898125 4 0.6440772810883599 2.1777371617259416 5 0.2996976098000789 1.266662094180696 6 0.1758575897736374 0.891907585471254 7 0.0972017011991466 0.5751477119665932 8 0.06929748087104198 0.4686136391951306 9 0.04326863550883736 0.32917223765830417 >10 0.14731011212449055 1.9167665466188744 >50 0.0032206935557552202 0.18206129343366378 >100 7.739208226542156E-4 0.09743384572362902 >500 3.170745932670582E-5 0.01672385243519916 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.736629653340967E-6 7.736629653340967E-6 2 0.0 1.5473259306681934E-5 0.0 7.736629653340967E-6 7.736629653340967E-6 3 0.0 1.5473259306681934E-5 0.0 1.5473259306681934E-5 7.736629653340967E-6 4 0.0 8.510292618675064E-5 0.0 3.094651861336387E-5 7.736629653340967E-6 5 0.0 8.510292618675064E-5 0.0 3.868314826670483E-5 7.736629653340967E-6 6 4.64197779200458E-5 8.510292618675064E-5 0.0 3.868314826670483E-5 7.736629653340967E-6 7 4.64197779200458E-5 8.510292618675064E-5 0.0 3.868314826670483E-5 7.736629653340967E-6 8 5.4156407573386764E-5 1.0831281514677353E-4 0.0 3.868314826670483E-5 7.736629653340967E-6 9 5.4156407573386764E-5 2.32098889600229E-4 0.0 3.868314826670483E-5 7.736629653340967E-6 10-11 6.96296668800687E-5 2.32098889600229E-4 0.0 4.255146309337531E-5 7.736629653340967E-6 12-13 8.510292618675064E-5 2.3983551925356997E-4 0.0 4.64197779200458E-5 7.736629653340967E-6 14-15 8.897124101342112E-5 3.3654338992033205E-4 0.0 5.4156407573386764E-5 7.736629653340967E-6 16-17 1.663375375468308E-4 3.4041170474700255E-4 0.0 7.736629653340966E-5 7.736629653340967E-6 18-19 1.7407416720017176E-4 3.6362159370702544E-4 0.0 1.2765438928012595E-4 7.736629653340967E-6 20-21 1.9728405616019465E-4 3.945681123203893E-4 0.0 1.7020585237350125E-4 1.5473259306681934E-5 22-23 2.3983551925356997E-4 4.758027236804695E-4 0.0 3.6362159370702544E-4 3.094651861336387E-5 24-25 2.6304540821359287E-4 5.144858719471743E-4 0.0 0.001168231077654486 4.255146309337531E-5 26-27 2.8238698234694525E-4 5.260908164271857E-4 0.0 0.003206832991309831 4.64197779200458E-5 28-29 3.017285564802977E-4 5.338274460805267E-4 0.0 0.01608832136412254 4.64197779200458E-5 30-31 3.210701306136501E-4 5.957204833072545E-4 0.0 0.02519433446610486 5.028809274671628E-5 32-33 3.3654338992033205E-4 5.957204833072545E-4 0.0 0.03409145856744697 6.96296668800687E-5 34-35 3.59753278880355E-4 6.692184650139936E-4 0.0 0.04659385208724597 6.96296668800687E-5 36-37 3.7909485301370737E-4 7.427164467207328E-4 0.0 0.06360283238011609 7.349798170673918E-5 38-39 3.7909485301370737E-4 7.736629653340968E-4 0.0 0.09453387773417327 7.736629653340966E-5 40-41 3.9843642714705975E-4 8.278193729074835E-4 0.0 0.15125884635246922 7.736629653340966E-5 42-43 4.4098789024043513E-4 8.703708360008588E-4 0.0 0.17908750321553668 7.736629653340966E-5 44-45 4.4098789024043513E-4 0.0010173667994143373 0.0 0.22062933613915103 7.736629653340966E-5 46-47 4.4098789024043513E-4 0.0011218112997344403 0.0 0.2662522412049027 8.123461136008014E-5 48-49 4.487245198937761E-4 0.0011256796145611109 0.0 0.30599530773411526 8.510292618675064E-5 50-51 4.758027236804695E-4 0.0012262558000545433 0.0 0.3451619953541539 8.510292618675064E-5 52-53 4.835393533338104E-4 0.0012301241148812137 0.0 0.3932606219089747 8.897124101342112E-5 54-55 5.028809274671629E-4 0.001233992429707884 0.0 0.48850240125642863 9.28395558400916E-5 56-57 5.260908164271857E-4 0.0012533340038412366 0.0 0.5860613011850582 9.28395558400916E-5 58-59 5.415640757338677E-4 0.0012610706334945775 0.0 0.6647041416112691 9.28395558400916E-5 60-61 5.454323905605381E-4 0.0013307003003746464 0.0 0.7113830966247019 9.28395558400916E-5 62-63 5.647739646938906E-4 0.0013809883931213626 0.0 0.7399738115086234 1.0057618549343257E-4 64-65 5.647739646938906E-4 0.0015318526713615115 0.0 0.761439090481818 1.0057618549343257E-4 66-67 5.725105943472316E-4 0.001543457615841523 0.0 0.7736977801675367 1.0444450032010305E-4 68-69 5.879838536539134E-4 0.001586009078934898 0.0 0.7860570460387489 1.0831281514677353E-4 70-71 6.073254277872658E-4 0.001624692227201603 0.0 0.7965285742745459 1.1218112997344402E-4 72-73 6.537452057073117E-4 0.0016362971716816143 0.0 0.8041955742610067 1.3152270410679643E-4 74-75 6.576135205339822E-4 0.0017175317830416946 0.0 0.8118045495250676 1.3152270410679643E-4 76-77 6.614818353606526E-4 0.0018297129130151386 0.0 0.8187249647499811 1.3152270410679643E-4 78-79 6.653501501873232E-4 0.0018761326909351845 0.0 0.8253049682701477 1.3152270410679643E-4 80-81 6.653501501873232E-4 0.001880001005761855 0.0 0.8297883451542587 1.3152270410679643E-4 82-83 6.730867798406641E-4 0.001887737635415196 0.0 0.8331769889424221 1.4312764858680788E-4 84-85 6.96296668800687E-4 0.0019032108947218778 0.0 0.8364070318226919 1.4699596341347836E-4 86-87 6.96296668800687E-4 0.0019264207836819007 0.0 0.8369176493798125 1.4699596341347836E-4 88-89 6.96296668800687E-4 0.0019883138209086286 0.0 0.8370104889356526 1.4699596341347836E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15265 0.0 44.751556 1 GTATCAA 25975 0.0 32.753807 1 TCAACGC 31980 0.0 25.830803 4 ATCAACG 32075 0.0 25.793396 3 CAACGCA 32535 0.0 25.313072 5 AACGCAG 33315 0.0 24.858452 6 TATCAAC 33935 0.0 24.627361 2 ACGCAGA 38505 0.0 21.442696 7 CGCAGAG 39725 0.0 20.805214 8 GTACATG 37990 0.0 20.0178 1 TACATGG 38145 0.0 19.487093 2 ACATGGG 38325 0.0 18.892748 3 AGAGTAC 41915 0.0 18.022629 10-11 GCAGAGT 46215 0.0 17.838297 9 CATGGGG 26880 0.0 17.387691 4 GAGTACT 24320 0.0 16.914568 12-13 CAGAGTA 45825 0.0 16.233976 10-11 GTGGTAT 7820 0.0 15.878248 1 AGTACTT 27975 0.0 15.235144 12-13 TATACCG 1105 0.0 14.7547455 5 >>END_MODULE