##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140186_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17565803 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14497435727817 33.0 31.0 34.0 30.0 34.0 2 32.27111843392528 34.0 31.0 34.0 30.0 34.0 3 32.32133202222523 34.0 31.0 34.0 30.0 34.0 4 35.960966828558874 37.0 35.0 37.0 35.0 37.0 5 35.82931853442737 37.0 35.0 37.0 35.0 37.0 6 35.85483117395772 37.0 35.0 37.0 35.0 37.0 7 35.77003522127625 37.0 35.0 37.0 33.0 37.0 8 35.73514749083774 37.0 35.0 37.0 33.0 37.0 9 37.36268082933641 39.0 37.0 39.0 34.0 39.0 10-11 37.25778696254307 39.0 37.0 39.0 33.5 39.0 12-13 37.216948977510455 39.0 37.0 39.0 33.0 39.0 14-15 38.39688575580632 40.0 38.0 41.0 33.0 41.0 16-17 38.42422472801272 40.0 38.0 41.0 33.0 41.0 18-19 38.43438239060292 40.0 38.0 41.0 33.5 41.0 20-21 38.40732443303068 40.0 38.0 41.0 34.0 41.0 22-23 38.30487443537608 40.0 38.0 41.0 33.5 41.0 24-25 38.214328942712314 40.0 38.0 41.0 33.0 41.0 26-27 38.04433235648751 40.0 37.0 41.0 33.0 41.0 28-29 37.911393223897704 40.0 37.0 41.0 33.0 41.0 30-31 37.752352215813204 40.0 37.0 41.0 32.5 41.0 32-33 37.923717657090485 40.0 37.0 41.0 33.0 41.0 34-35 37.899346461049056 40.0 37.0 41.0 33.0 41.0 36-37 37.81188734330806 40.0 37.0 41.0 33.0 41.0 38-39 37.70235743157679 40.0 37.0 41.0 33.0 41.0 40-41 37.64504812160236 40.0 37.0 41.0 33.0 41.0 42-43 37.53112579439593 40.0 36.5 41.0 32.0 41.0 44-45 37.56773144608789 39.5 36.5 41.0 32.5 41.0 46-47 37.702938826146195 40.0 37.0 41.0 32.5 41.0 48-49 37.620509570543625 40.0 36.5 41.0 32.0 41.0 50-51 37.493578940163594 40.0 36.0 41.0 32.0 41.0 52-53 37.33041972817739 39.0 36.0 41.0 31.0 41.0 54-55 37.21363906325354 39.0 36.0 41.0 31.0 41.0 56-57 37.04250566684523 39.0 35.0 40.5 31.0 41.0 58-59 36.8849981888768 39.0 35.0 40.0 31.0 41.0 60-61 36.649354449523926 38.0 35.0 40.0 31.0 41.0 62-63 36.379429699813755 38.0 35.0 40.0 30.0 41.0 64-65 36.151818015600846 37.5 34.5 40.0 30.0 41.0 66-67 35.85923483753025 37.0 34.0 40.0 29.5 41.0 68-69 35.545367360472085 36.5 34.0 39.0 29.0 41.0 70-71 35.25178779106972 36.0 34.0 39.0 29.0 40.5 72-73 34.954697446602054 36.0 34.0 39.0 29.0 40.0 74-75 34.57294779844035 35.0 33.0 38.0 29.0 40.0 76-77 33.512962697321925 34.5 31.5 37.0 27.5 39.0 78-79 33.86425385725834 35.0 33.0 37.0 28.0 39.0 80-81 33.74290123966838 35.0 33.0 36.0 29.0 39.0 82-83 33.51432445072301 35.0 33.0 36.0 29.0 37.5 84-85 33.28836557032672 35.0 32.5 35.5 28.0 37.0 86-87 33.07144240584056 34.5 32.0 35.0 28.0 37.0 88-89 32.834796876988825 34.0 32.0 35.0 27.0 36.0 90-91 32.687720428403786 34.0 32.0 35.0 27.0 36.0 92-93 32.589467593516005 34.0 32.0 35.0 27.0 36.0 94-95 32.532158291745404 34.0 32.0 35.0 27.0 35.0 96-97 32.471459434109036 34.0 32.0 35.0 27.0 35.0 98-99 32.60232147212976 34.0 32.0 35.0 28.5 35.0 100-101 31.667267077037963 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 9.0 19 23.0 20 102.0 21 741.0 22 3353.0 23 11693.0 24 30795.0 25 64581.0 26 115064.0 27 179062.0 28 254394.0 29 335267.0 30 423636.0 31 525112.0 32 651183.0 33 826916.0 34 1100711.0 35 1529343.0 36 2314539.0 37 3523783.0 38 3718714.0 39 1879615.0 40 77164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.913575428347905 22.02119652599998 15.304401398558323 23.76082664709379 2 14.061126396695354 22.336815713922178 41.26938664671855 22.332671242663913 3 16.90143058077106 27.60896840298163 31.577383624306844 23.912217391940466 4 11.956322920731754 18.92351216729616 39.43390925571859 29.686255656253497 5 12.412304749176567 38.611414462521296 36.37190397729042 12.604376811011713 6 29.267788099411113 39.40207572634169 18.688732874893336 12.641403299353865 7 25.580259553178415 33.13927635417521 24.13855489555473 17.141909197091646 8 24.08870804255291 37.636662553940745 21.19530772376304 17.079321679743305 9 25.41678851800854 16.278965442115002 21.538485886469296 36.765760153407165 10-11 23.85999660818239 27.095578835764012 29.562286449415375 19.48213810663822 12-13 24.537452116478818 24.803728016305318 29.631551714430586 21.027268152785272 14-15 21.750454562196786 26.127311116946945 26.97504919074864 25.14718513010763 16-17 21.363743121465976 29.38178739167493 27.57372250490009 21.680746981959004 18-19 21.43551308186708 28.448542887563978 29.31315465623746 20.80278937433148 20-21 22.356873373063706 27.558557608400626 29.077213192009687 21.00735582652598 22-23 22.078025120937763 27.521051549457017 28.881776128954122 21.519147200651098 24-25 21.742037595437242 27.720605867434656 28.986911736409866 21.550444800718235 26-27 21.800809867460693 27.750102273258193 28.87417939242278 21.574908466858336 28-29 21.79501525419091 27.73297983437004 28.9128909313949 21.559113980044145 30-31 21.971117789881962 27.673324753245907 28.72361158647989 21.63194587039224 32-33 21.796564633748975 27.841262781678182 28.671903764605734 21.69026881996711 34-35 21.921679211019015 27.84775881217832 28.7117991942016 21.518762782601065 36-37 21.959980756254268 27.779810999214494 28.566423785625343 21.693784458905892 38-39 21.737615098028982 27.975887192844734 28.653016274647193 21.633481434479094 40-41 21.924478428470497 27.762764964188687 28.580818429310728 21.731938178030088 42-43 21.79297500192788 27.941102027086806 28.30641716062133 21.95950581036399 44-45 21.89803729660765 27.928242592415824 28.16987181354415 22.00384829743237 46-47 22.06955186859703 27.907425089103 27.988397995013624 22.034625047286344 48-49 21.983111798667114 28.116839585757496 27.80414574617385 22.095902869401538 50-51 22.00772470516415 28.113881500814347 27.773929432293958 22.10446436172755 52-53 22.13500601120562 28.052961055411902 27.652541855585255 22.159491077797224 54-55 22.155883937717853 27.886205879976377 27.742828423768877 22.21508175853689 56-57 22.19014553966241 27.960099198521597 27.66603674222542 22.183718519590574 58-59 22.04953847794798 27.995012993574992 27.679835218686645 22.275613309790383 60-61 22.153504750287027 27.959181071768462 27.738201245209066 22.149112932735452 62-63 22.21637512806692 28.02307294436529 27.605334867887656 22.155217059680137 64-65 22.124805029793272 27.999745941717656 27.63417503100382 22.24127399748525 66-67 22.21963193572448 28.013708485687307 27.494108731934652 22.272550846653562 68-69 22.153406557020265 27.95063582138727 27.534784951674396 22.361172669918066 70-71 22.175118239575333 27.791706121556025 27.5465451867838 22.48663045208484 72-73 22.187178772455756 27.827625225222686 27.43969776023021 22.545498242091348 74-75 22.10561196022853 27.83798892543374 27.46957760375911 22.586821510578613 76-77 22.28316775851171 27.7626516395907 27.41551302049816 22.53866758139943 78-79 22.09728265985685 27.782916644886 27.406719690946467 22.713081004310677 80-81 22.28666469566202 27.764026558396733 27.33642271926645 22.612886026674804 82-83 22.228181131332775 27.711997373773873 27.521189431187615 22.53863206370574 84-85 22.301601123863378 27.696107491461163 27.47530449066225 22.52698689401321 86-87 22.203813401208222 27.712665847200007 27.515308474084467 22.568212277507303 88-89 22.217095078526107 27.600439944932475 27.539102238072232 22.643362738469186 90-91 22.2083956416302 27.60731043242213 27.55567787859235 22.628616047355322 92-93 22.253275272282075 27.508030807886602 27.63650956009649 22.602184359734835 94-95 22.09563220120066 27.54075070713771 27.776523113508745 22.587093978152886 96-97 21.964938036704954 27.55901408158335 27.82464866707918 22.651399214632516 98-99 22.133642715584916 28.21491313951659 27.89494607171241 21.756498073186084 100-101 25.154669404397943 35.88375188874605 29.049783486262058 9.911795220593946 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3293.0 1 3005.0 2 4263.5 3 6085.0 4 7954.0 5 12503.0 6 16498.5 7 19867.5 8 22455.5 9 22670.0 10 21161.0 11 19528.0 12 21537.5 13 28582.0 14 45519.0 15 69556.0 16 89327.0 17 99761.5 18 102111.5 19 99329.5 20 93386.0 21 87372.5 22 85686.0 23 93090.5 24 111091.5 25 140153.0 26 178929.5 27 224221.0 28 282009.0 29 349275.0 30 412095.5 31 472809.0 32 526658.0 33 570241.5 34 605535.5 35 629049.5 36 651142.5 37 666542.0 38 668618.5 39 663900.5 40 656165.5 41 650111.0 42 640957.5 43 631711.0 44 627843.5 45 631892.5 46 637088.0 47 640638.0 48 646680.5 49 648999.0 50 643175.5 51 632812.5 52 611107.5 53 577416.0 54 547726.0 55 519435.5 56 486653.0 57 448773.0 58 404976.0 59 356105.5 60 306471.0 61 259700.5 62 213442.0 63 172182.5 64 138784.5 65 116016.5 66 99878.0 67 73754.0 68 50269.0 69 39863.0 70 28895.0 71 17763.0 72 11881.0 73 8485.5 74 6093.0 75 4305.0 76 2865.5 77 1803.0 78 1240.5 79 876.5 80 609.5 81 424.5 82 326.5 83 231.5 84 146.5 85 107.0 86 82.5 87 60.0 88 38.5 89 23.5 90 16.5 91 12.5 92 11.5 93 7.5 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013264409261563505 3 0.0 4 3.8711580677524394E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0031851660866286614 18-19 0.0 20-21 0.002040989909140936 22-23 0.0 24-25 3.1038836247528854E-4 26-27 0.003407093294760631 28-29 0.0 30-31 1.2842432034710412E-4 32-33 8.125912734564199E-4 34-35 7.866595855819883E-4 36-37 0.010248925652255656 38-39 0.011563899836680632 40-41 0.023955150377848313 42-43 0.0019840190957846277 44-45 0.0013115289308344455 46-47 0.0017503917219471006 48-49 0.0016207987253304876 50-51 8.346547412021593E-5 52-53 1.1864721073052867E-4 54-55 0.005910920442856878 56-57 0.0035049451111257186 58-59 0.0037733032895471185 60-61 0.0015812901488753703 62-63 3.991637486477091E-4 64-65 6.908788900653485E-4 66-67 6.523558496377228E-4 68-69 1.370511284310236E-5 70-71 0.0 72-73 1.268610426864151E-4 74-75 2.215508675074355E-4 76-77 0.0016092619841178166 78-79 0.0018356117358199362 80-81 0.011093613917043317 82-83 0.009665036945401545 84-85 0.012619361830109341 86-87 0.006272396931722408 88-89 0.08650915264756617 90-91 3.588129537837091E-4 92-93 2.5012892061450005E-5 94-95 2.6926295420867186E-4 96-97 0.015031993327985289 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 489.0 20-21 1626.0 22-23 3340.0 24-25 6737.0 26-27 8368.0 28-29 15450.0 30-31 42219.0 32-33 54827.0 34-35 78489.0 36-37 124192.0 38-39 136622.0 40-41 143788.0 42-43 166337.0 44-45 194403.0 46-47 193510.0 48-49 178856.0 50-51 164670.0 52-53 150121.0 54-55 165809.0 56-57 174370.0 58-59 179393.0 60-61 183152.0 62-63 173098.0 64-65 184317.0 66-67 197996.0 68-69 203346.0 70-71 202940.0 72-73 196412.0 74-75 196739.0 76-77 198792.0 78-79 213913.0 80-81 217728.0 82-83 209163.0 84-85 211020.0 86-87 224980.0 88-89 241343.0 90-91 265457.0 92-93 282612.0 94-95 356675.0 96-97 460289.0 98-99 1490466.0 100-101 9471749.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.13012001079369 #Duplication Level Percentage of deduplicated Percentage of total 1 88.75347413530437 73.78086956242727 2 7.692792304070233 12.790054949109372 3 1.9306973133866847 4.814972980990561 4 0.7169704089511585 2.3840734456119055 5 0.334579484387226 1.3906816345129787 6 0.18923378242586125 0.9438616225894961 7 0.10538086722938465 0.6132226897734183 8 0.06491943662359337 0.43174084460419454 9 0.04775323459004876 0.35727589101369045 >10 0.15879967214911708 2.0521493291801916 >50 0.0039132505289748 0.22287154677597504 >100 0.0014593857416040808 0.20567378089325572 >500 2.6724611836431058E-5 0.012551722517640352 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.985015657980452E-5 0.0 0.0 0.0 3 0.0 3.985015657980452E-5 0.0 0.0 0.0 4 0.0 8.53931926710097E-5 0.0 5.692879511400646E-6 0.0 5 0.0 8.53931926710097E-5 0.0 5.692879511400646E-6 0.0 6 2.2771518045602583E-5 8.53931926710097E-5 0.0 1.1385759022801292E-5 0.0 7 2.2771518045602583E-5 8.53931926710097E-5 0.0 1.1385759022801292E-5 0.0 8 2.2771518045602583E-5 9.677895169381098E-5 0.0 1.1385759022801292E-5 0.0 9 2.2771518045602583E-5 2.220223009446252E-4 0.0 3.4157277068403876E-5 5.692879511400646E-6 10-11 2.2771518045602583E-5 2.220223009446252E-4 0.0 6.26216746254071E-5 1.1385759022801292E-5 12-13 2.2771518045602583E-5 2.220223009446252E-4 0.0 7.970031315960904E-5 1.1385759022801292E-5 14-15 2.2771518045602583E-5 3.358798911726381E-4 0.0 8.823963242671001E-5 1.1385759022801292E-5 16-17 3.7003716824104196E-5 3.501120899511397E-4 0.0 1.0816471071661227E-4 1.7078638534201938E-5 18-19 3.985015657980452E-5 4.212730838436478E-4 5.692879511400646E-6 1.2808978900651454E-4 2.2771518045602583E-5 20-21 3.985015657980452E-5 4.8674119822475525E-4 5.692879511400646E-6 1.7647926485342001E-4 2.5617957801302906E-5 22-23 4.8389475846905485E-5 5.721343908957649E-4 5.692879511400646E-6 4.098873248208465E-4 3.985015657980452E-5 24-25 5.977523486970678E-5 6.575275835667746E-4 5.692879511400646E-6 0.0013065158478664483 6.26216746254071E-5 26-27 6.831455413680775E-5 6.888384208794782E-4 5.692879511400646E-6 0.00370037168241042 6.26216746254071E-5 28-29 6.831455413680775E-5 6.888384208794782E-4 5.692879511400646E-6 0.01946110860972311 6.26216746254071E-5 30-31 6.831455413680775E-5 7.941566918403901E-4 5.692879511400646E-6 0.02890274927938108 6.26216746254071E-5 32-33 6.831455413680775E-5 8.055424508631914E-4 5.692879511400646E-6 0.03480057245319215 6.26216746254071E-5 34-35 6.831455413680775E-5 8.738570049999991E-4 5.692879511400646E-6 0.04282468612451136 6.831455413680775E-5 36-37 6.831455413680775E-5 9.421715591368068E-4 5.692879511400646E-6 0.05333658814231265 7.116099389250808E-5 38-39 7.400743364820839E-5 9.734823964495105E-4 5.692879511400646E-6 0.07232803419234521 7.685387340390872E-5 40-41 7.400743364820839E-5 0.0010816471071661228 5.692879511400646E-6 0.10410853406473931 7.970031315960904E-5 42-43 8.53931926710097E-5 0.001101572185456025 5.692879511400646E-6 0.11975256696206829 7.970031315960904E-5 44-45 9.393251193811066E-5 0.0012382012937296404 5.692879511400646E-6 0.14249846704986957 7.970031315960904E-5 46-47 9.677895169381098E-5 0.0013662910827361551 5.692879511400646E-6 0.169260693632964 7.970031315960904E-5 48-49 9.677895169381098E-5 0.0013719839622475557 5.692879511400646E-6 0.19149423456473924 9.108607218241033E-5 50-51 9.677895169381098E-5 0.0015114595102768715 5.692879511400646E-6 0.21477241888685647 9.108607218241033E-5 52-53 1.0247183120521162E-4 0.0015313845885667737 5.692879511400646E-6 0.24076326029615613 9.677895169381097E-5 54-55 1.0531827096091195E-4 0.0015456167873452754 5.692879511400646E-6 0.30909773951125374 1.1101115047231259E-4 56-57 1.1385759022801291E-4 0.0015826205041693795 5.692879511400646E-6 0.36266488927377816 1.223969094951139E-4 58-59 1.1385759022801291E-4 0.0016110849017263828 5.692879511400646E-6 0.418896306647638 1.3093622876221485E-4 60-61 1.252433492508142E-4 0.0016281635402605847 5.692879511400646E-6 0.4522508877049344 1.366291082736155E-4 62-63 1.4516842754071647E-4 0.0016509350583061872 5.692879511400646E-6 0.46898795346845235 1.366291082736155E-4 64-65 1.4801486729641678E-4 0.0018388000821824087 5.692879511400646E-6 0.4854659932142015 1.366291082736155E-4 66-67 1.4801486729641678E-4 0.0018558787207166106 5.692879511400646E-6 0.49483362645021123 1.366291082736155E-4 68-69 1.4801486729641678E-4 0.0018928824375407148 5.692879511400646E-6 0.5029061295973773 1.366291082736155E-4 70-71 1.5370774680781743E-4 0.0019185003953420177 5.692879511400646E-6 0.510879007353094 1.366291082736155E-4 72-73 1.5940062631921809E-4 0.0019355790338762195 5.692879511400646E-6 0.5174571296285173 1.5940062631921809E-4 74-75 1.5940062631921809E-4 0.001975429190456024 5.692879511400646E-6 0.5233748778806184 1.5940062631921809E-4 76-77 1.5940062631921809E-4 0.0020437437445928316 5.692879511400646E-6 0.5287176453020679 1.622470660749184E-4 78-79 1.5940062631921809E-4 0.002077901021661236 5.692879511400646E-6 0.5336818362360093 1.6509350583061874E-4 80-81 1.5940062631921809E-4 0.002092133220439737 5.692879511400646E-6 0.5365937441060906 1.7932570460912035E-4 82-83 1.6509350583061874E-4 0.0021006725397068383 5.692879511400646E-6 0.5382816828812209 1.9640434314332228E-4 84-85 1.707863853420194E-4 0.0021035189794625384 5.692879511400646E-6 0.5398272996685662 1.992507828990226E-4 86-87 1.7647926485342001E-4 0.002134829816775242 5.692879511400646E-6 0.5400464755297552 2.0209722265472293E-4 88-89 1.7647926485342001E-4 0.0021974514914006493 5.692879511400646E-6 0.5400948650056021 2.0494366241042325E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21590 0.0 47.724194 1 GTATCAA 38435 0.0 34.43051 1 TCAACGC 47240 0.0 27.32981 4 ATCAACG 47690 0.0 27.045897 3 CAACGCA 48850 0.0 26.445866 5 AACGCAG 49575 0.0 26.075806 6 TATCAAC 50415 0.0 25.846682 2 ACGCAGA 57760 0.0 22.352024 7 GTACATG 56365 0.0 21.93628 1 CGCAGAG 60290 0.0 21.434637 8 TACATGG 57255 0.0 21.2267 2 ACATGGG 58290 0.0 20.338665 3 GTGGTAT 10545 0.0 18.678942 1 GCAGAGT 68515 0.0 18.644056 9 GAGTACT 36185 0.0 18.132256 12-13 AGAGTAC 62335 0.0 17.994162 10-11 CATGGGG 41630 0.0 17.464546 4 TGGTATC 10490 0.0 17.31733 2 CAGAGTA 67745 0.0 16.850388 10-11 GTACTTT 41840 0.0 15.677822 14-15 >>END_MODULE