##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23300110 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41045625964856 31.0 31.0 34.0 30.0 34.0 2 31.57037941022596 31.0 31.0 34.0 30.0 34.0 3 31.61635391420899 31.0 31.0 34.0 30.0 34.0 4 35.42019187892246 37.0 35.0 37.0 33.0 37.0 5 35.23144212623889 37.0 35.0 37.0 32.0 37.0 6 35.22317255154589 37.0 35.0 37.0 32.0 37.0 7 35.12665129048747 37.0 35.0 37.0 32.0 37.0 8 35.06024181860086 37.0 35.0 37.0 32.0 37.0 9 36.59806009499526 39.0 35.0 39.0 32.0 39.0 10-11 36.532858986502646 38.5 35.0 39.0 32.0 39.0 12-13 36.48214173666992 38.0 35.0 39.0 32.0 39.0 14-15 37.56100462615842 39.0 36.0 41.0 32.0 41.0 16-17 37.53185615861899 39.0 36.0 41.0 32.0 41.0 18-19 37.54603722900879 39.0 36.0 41.0 32.0 41.0 20-21 37.51876572145575 39.0 36.0 41.0 32.0 41.0 22-23 37.437960231283874 39.0 36.0 41.0 32.0 41.0 24-25 37.31695882812416 39.0 36.0 41.0 31.0 41.0 26-27 37.07859238998902 39.0 36.0 40.5 31.0 41.0 28-29 36.92024125627835 39.0 36.0 40.0 30.5 41.0 30-31 36.74503380532039 38.5 35.5 40.0 30.0 41.0 32-33 36.516277592036005 38.0 35.0 40.0 30.0 41.0 34-35 36.358241915568826 38.0 35.0 40.0 30.0 41.0 36-37 36.19673161528257 38.0 35.0 40.0 30.0 41.0 38-39 36.027639882744865 38.0 34.5 40.0 29.5 41.0 40-41 35.864337340674396 38.0 34.0 40.0 29.0 41.0 42-43 35.64946668948713 38.0 34.0 40.0 28.0 41.0 44-45 36.08090222725062 38.0 34.5 40.0 29.5 41.0 46-47 36.33318538354253 38.0 35.0 40.0 30.0 41.0 48-49 36.38171381753584 38.0 35.0 40.0 30.0 41.0 50-51 36.306919125757396 38.0 35.0 40.0 29.5 41.0 52-53 36.16892033127584 38.0 34.0 40.0 29.0 41.0 54-55 36.03281887375017 38.0 34.0 40.0 28.5 41.0 56-57 35.909940954608665 38.0 34.0 40.0 28.0 41.0 58-59 35.7241664907601 38.0 34.0 40.0 28.0 41.0 60-61 35.5372052587064 37.5 34.0 40.0 28.0 41.0 62-63 35.308632325818294 37.0 33.0 40.0 28.0 41.0 64-65 35.0416772114726 37.0 33.0 39.5 28.0 41.0 66-67 34.7361234819393 36.0 33.0 39.0 27.0 41.0 68-69 34.47227413110235 36.0 32.0 39.0 26.5 40.0 70-71 34.191540760897745 35.0 32.0 39.0 26.0 40.0 72-73 33.89170548345044 35.0 32.0 38.0 26.0 40.0 74-75 33.56505927809516 35.0 31.0 37.5 26.0 39.5 76-77 31.87080429078761 33.5 29.5 35.5 25.0 38.5 78-79 32.89669584879199 34.0 31.0 36.0 26.0 39.0 80-81 32.97829498993897 34.0 31.0 36.0 26.0 39.0 82-83 32.7569146034066 34.0 31.0 36.0 26.0 37.5 84-85 32.51876646248722 34.0 31.0 35.0 26.0 37.0 86-87 32.31270646008794 34.0 31.0 35.0 26.0 36.5 88-89 32.109384778983184 34.0 31.0 35.0 26.0 36.0 90-91 31.961171652161866 34.0 31.0 35.0 26.0 36.0 92-93 31.92261716631824 34.0 31.0 35.0 26.0 35.5 94-95 31.9130354742434 34.0 31.0 35.0 26.0 35.0 96-97 32.02440533148312 34.0 31.0 35.0 26.0 35.0 98-99 32.2336873232889 34.0 31.0 35.0 27.0 35.0 100 30.327845494403174 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 2.0 18 8.0 19 64.0 20 371.0 21 2339.0 22 10422.0 23 34382.0 24 84928.0 25 170567.0 26 291830.0 27 437810.0 28 598707.0 29 761174.0 30 923945.0 31 1096447.0 32 1298487.0 33 1551170.0 34 1888506.0 35 2355516.0 36 3032164.0 37 3785547.0 38 3458513.0 39 1472525.0 40 44685.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.12705519416003 21.730438182480682 14.879037051756407 23.263469571602883 2 14.65240289234288 22.34602309728735 41.160349685361204 21.84122432500856 3 17.54791361705647 27.62765187064146 31.597006692114615 23.22742782018745 4 12.391814189439303 19.016110463163745 39.546563691318596 29.04551165607836 5 12.340139166724965 38.77620749429938 36.52555288365591 12.358100455319738 6 28.84110847545355 39.66135782191586 18.887807825799964 12.609725876830623 7 25.191533430528867 33.48230115651815 24.40688906618896 16.91927634676403 8 23.84010820905659 37.74618313591415 21.434803472588488 16.97890518244077 9 25.26938284840715 16.555634286705086 21.80222754313177 36.37275532175599 10-11 23.631770290506807 27.262247024777743 29.806891882217883 19.299090802497567 12-13 24.36324043838129 24.991832646769225 29.814822110926475 20.830104803923007 14-15 21.592381557325822 26.367558421311553 27.220569923975447 24.81949009738718 16-17 21.077601803711175 29.51742923518198 27.876321338048594 21.52864762305825 18-19 21.14846783516503 28.619292858091967 29.596033133586015 20.636206173156996 20-21 21.986308328379163 27.74269189279347 29.48672369770075 20.784276081126617 22-23 21.769800319641227 27.613275454570296 29.321683314441575 21.295240911346898 24-25 21.558461636906078 27.832200356706196 29.32075728561447 21.28858072077326 26-27 21.490522496777224 27.91369461999872 29.25349847496245 21.342284408261605 28-29 21.54413058189394 27.8871944912266 29.28213618692212 21.286538739957344 30-31 21.75887163399821 27.802676367005123 29.114527315141842 21.323924683854823 32-33 21.625408738979342 27.949480259574738 29.026126464237628 21.398984537208293 34-35 21.723632700840614 27.991038407028295 28.99617868606582 21.289150206065266 36-37 21.780484764041766 27.900186327389363 28.885402937036915 21.433925971531956 38-39 21.593080446689694 28.087601224867477 28.952764715005042 21.36655361343779 40-41 21.770867274684992 27.93534349456411 28.85470192613347 21.439087304617438 42-43 21.67343066029477 28.09666605304454 28.568866887132383 21.661036399528307 44-45 21.732302207821576 28.17249781977405 28.39910352027121 21.696096452133155 46-47 21.897578730108403 28.138457290336284 28.17782706963917 21.78613690991614 48-49 21.836261563675414 28.271215309894142 28.109743439317942 21.782779687112498 50-51 21.87098166516345 28.328811671225974 28.006941707379205 21.79326495623137 52-53 22.040984864840905 28.230620988451054 27.899108477572504 21.82928566913554 54-55 22.02510686112235 28.151170271635834 27.95236284623675 21.871360021005067 56-57 21.94568563552929 28.285386165862096 27.90103702336715 21.86789117524146 58-59 21.900346147108007 28.29760168726059 27.940054169848533 21.861997995782865 60-61 21.99496470024473 28.300663164814015 27.90746572304305 21.79690641189821 62-63 21.97796060522273 28.328717831439796 27.904167046707144 21.789154516630333 64-65 21.97645835137382 28.22140972589636 27.89060681612617 21.911525106603644 66-67 22.041627802303726 28.23970183585897 27.773767793311983 21.944902568525322 68-69 21.925124327996322 28.22450102976048 27.87836741122795 21.972007231015247 70-71 21.96806444826297 28.048359096253577 27.906085897102457 22.077490558380997 72-73 21.99311630502434 28.12900670366702 27.796759623422883 22.081117367885756 74-75 21.86047164702028 28.19135202358904 27.847294414987868 22.10088191440282 76-77 21.98306980809021 28.134756356266617 27.85434662876413 22.027827206879042 78-79 21.867880070774085 28.14620528867645 27.831562143492267 22.154352497057197 80-81 21.945116309848547 28.138622201951087 27.818868716871805 22.09739277132857 82-83 22.00412324581352 28.044014018706577 27.973351210361674 21.97851152511823 84-85 22.00994846357015 28.050724722569058 27.92716239979821 22.012164414062582 86-87 21.8531362956965 28.10399542362379 28.006609968727158 22.036258311952555 88-89 21.976977661539358 27.963292015527998 27.96487399794672 22.09485632498593 90-91 21.96915483172151 28.01405126883068 28.044466358786174 21.972327540661638 92-93 21.987435664766426 27.933267327990958 28.089690803956774 21.989606203285845 94-95 21.754493449940725 27.966490798044703 28.233892584457827 22.045123167556746 96-97 21.76931550678283 28.07249337265864 28.362003236120376 21.796187884438154 98-99 22.784820804165385 30.036647744380584 28.642010501218163 18.53652095023587 100 22.376028218561302 30.418326422628855 22.458841413842457 24.746803944967382 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5716.0 1 4948.5 2 6476.5 3 9134.0 4 11755.5 5 19010.5 6 25995.0 7 31850.5 8 36203.0 9 36297.0 10 32903.0 11 28761.5 12 30101.0 13 38665.0 14 58847.0 15 91215.5 16 119779.5 17 135839.0 18 143276.0 19 142907.5 20 137462.0 21 131432.0 22 127453.5 23 133848.5 24 155163.5 25 192026.5 26 244066.0 27 302605.5 28 370373.0 29 451987.5 30 533562.0 31 609425.5 32 679381.5 33 738560.5 34 789725.0 35 832514.0 36 872287.0 37 900226.5 38 905188.0 39 901752.5 40 899080.5 41 890691.0 42 877752.5 43 867884.0 44 863440.0 45 867033.0 46 870286.5 47 874377.0 48 875658.5 49 866251.0 50 851400.5 51 828382.0 52 793740.5 53 748645.5 54 703948.5 55 662962.5 56 620264.5 57 570514.5 58 513537.5 59 450905.0 60 383473.5 61 320369.0 62 262495.5 63 211431.5 64 167234.5 65 130477.0 66 102984.0 67 78879.0 68 58622.5 69 44536.5 70 33660.0 71 24294.5 72 17262.0 73 12221.5 74 8772.5 75 6200.0 76 4278.5 77 2874.0 78 2041.0 79 1471.5 80 1011.0 81 688.5 82 517.5 83 361.5 84 246.5 85 190.0 86 156.0 87 124.0 88 90.0 89 64.0 90 41.0 91 28.5 92 21.5 93 13.0 94 8.0 95 5.5 96 4.0 97 4.0 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11619687632375986 3 4.291825231726374E-6 4 1.502138831104231E-4 5 0.0 6 0.0 7 0.0 8 1.1587928125661211E-4 9 0.0 10-11 8.583650463452748E-6 12-13 1.2017110648833846E-4 14-15 3.111573293001621E-4 16-17 6.394819595272297E-4 18-19 2.575095139035824E-5 20-21 7.511193663660036E-5 22-23 4.2928486014682705E-6 24-25 0.006140844344625902 26-27 2.1484087692288225E-5 28-29 0.0022405332899274803 30-31 0.00205022310066912 32-33 0.022922055230125235 34-35 0.015571550679383397 36-37 0.00827317438019645 38-39 0.004129744600627598 40-41 8.354157765970912E-4 42-43 2.4066467840502692E-4 44-45 0.001026719843549511 46-47 0.0017169474186902432 48-49 0.001173490382855149 50-51 6.274219066543067E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 5.0808250388864575E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 9.24103673342905E-5 70-71 4.944083071004189E-4 72-73 7.914475752908696E-6 74-75 5.0815360542070456E-5 76-77 3.091757672372949E-4 78-79 2.1447646281677932E-4 80-81 1.3960837616750996E-5 82-83 2.837863708416996E-6 84-85 0.0 86-87 9.986434310145636E-5 88-89 4.973632109601115E-4 90-91 3.0654191718549393E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 943.0 20-21 3214.0 22-23 6566.0 24-25 12391.0 26-27 17424.0 28-29 28652.0 30-31 58799.0 32-33 76952.0 34-35 107820.0 36-37 146111.0 38-39 174182.0 40-41 179465.0 42-43 214572.0 44-45 255843.0 46-47 232338.0 48-49 217127.0 50-51 200879.0 52-53 198834.0 54-55 215993.0 56-57 228815.0 58-59 231017.0 60-61 230149.0 62-63 225330.0 64-65 238685.0 66-67 254595.0 68-69 261822.0 70-71 264849.0 72-73 256958.0 74-75 263943.0 76-77 245172.0 78-79 272078.0 80-81 287726.0 82-83 287918.0 84-85 300266.0 86-87 325772.0 88-89 365217.0 90-91 406995.0 92-93 459530.0 94-95 563299.0 96-97 1076244.0 98-99 1759010.0 100-101 1.2146615E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.3519337930898 #Duplication Level Percentage of deduplicated Percentage of total 1 89.28235641591642 74.41857060870511 2 7.1854539911147235 11.978429706813746 3 1.851359901517334 4.629432838153622 4 0.7565888037891327 2.5225255952809915 5 0.329653641774095 1.3738634261902654 6 0.1860853706016409 0.930634529415033 7 0.11383825086263546 0.6642046844316476 8 0.07052816465518796 0.470292712870989 9 0.045811638048557354 0.3436639759418711 >10 0.17305662566691357 2.2381957113188142 >50 0.0040047460346109166 0.22089165682494818 >100 0.0011911966654962853 0.15669228628235604 >500 4.0809738621029724E-5 0.02353069161536053 >1k 3.0443614608602195E-5 0.029071576155243237 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0042776622084616E-5 0.0 4.291825231726374E-6 0.0 3 0.0 3.0042776622084616E-5 0.0 8.583650463452748E-6 0.0 4 0.0 9.87119803297066E-5 0.0 8.583650463452748E-6 0.0 5 0.0 9.87119803297066E-5 0.0 8.583650463452748E-6 0.0 6 0.0 9.87119803297066E-5 0.0 1.2875475695179122E-5 8.583650463452748E-6 7 0.0 1.0300380556143298E-4 0.0 1.2875475695179122E-5 8.583650463452748E-6 8 0.0 1.158792812566121E-4 0.0 1.2875475695179122E-5 8.583650463452748E-6 9 0.0 2.746768148304879E-4 0.0 3.0042776622084616E-5 1.7167300926905495E-5 10-11 0.0 2.8326046529394066E-4 0.0 6.866920370762198E-5 1.7167300926905495E-5 12-13 0.0 2.8326046529394066E-4 0.0 8.15446794028011E-5 1.7167300926905495E-5 14-15 0.0 3.648051446967418E-4 0.0 1.008578929455698E-4 4.7210077548990115E-5 16-17 0.0 3.7982653300778406E-4 0.0 1.2017110648833846E-4 5.579372801244286E-5 18-19 0.0 4.270366105567742E-4 0.0 1.330465821835176E-4 5.579372801244286E-5 20-21 0.0 4.7639260072162746E-4 0.0 1.5235979572628626E-4 5.579372801244286E-5 22-23 0.0 5.27894503502344E-4 0.0 1.673811840373286E-4 7.081511632348517E-5 24-25 0.0 5.944177945941028E-4 0.0 1.8884031019596046E-4 8.583650463452748E-5 26-27 0.0 6.244605712161874E-4 0.0 2.446340382084033E-4 9.012832986625385E-5 28-29 0.0 6.287523964479138E-4 0.0 4.8283033856921705E-4 9.012832986625385E-5 30-31 0.0 6.995675127713989E-4 0.0 0.001057934919620551 9.012832986625385E-5 32-33 0.0 7.017134253872622E-4 0.0 0.0024227353433095384 9.87119803297066E-5 34-35 0.0 8.347600075707797E-4 0.0 0.004371223998513312 1.0300380556143298E-4 36-37 0.0 9.613688519067077E-4 0.0 0.007289665156087246 1.0300380556143298E-4 38-39 0.0 9.999952789922452E-4 0.0 0.01224886921134707 1.0300380556143298E-4 40-41 0.0 0.001090123608858499 0.0 0.017259575169387614 1.0729563079315935E-4 42-43 0.0 0.0011223122980964467 0.0 0.02215440184617154 1.0944154340902253E-4 44-45 0.0 0.0012746720938227331 0.0 0.02805351562717944 1.137333686407489E-4 46-47 0.0 0.0013690922489207132 0.0 0.03418438797070057 1.2231701910420166E-4 48-49 0.0 0.0013755299867683028 0.0 0.04043543142071003 1.330465821835176E-4 50-51 0.0 0.0015235979572628627 0.0 0.04683239692859819 1.330465821835176E-4 52-53 0.0 0.0015321816077263155 0.0 0.05291391328195447 1.4592205787869673E-4 54-55 0.0 0.0015472029960373578 0.0 0.0590619529264025 1.5879753357387583E-4 56-57 0.0 0.0015793916852753056 0.0 0.06543745930813202 1.5879753357387583E-4 58-59 0.0 0.0015944130735863478 0.0 0.07199536826220992 1.60943446189739E-4 60-61 0.0 0.0016137262871291165 0.0 0.07818847207159108 1.673811840373286E-4 62-63 0.0 0.0016437690637512012 0.0 0.0842850098132584 1.802566597325077E-4 64-65 0.0 0.001815442073020256 0.0 0.09027854374936428 1.802566597325077E-4 66-67 0.0 0.0018304634613312983 0.0 0.09654675450030065 1.802566597325077E-4 68-69 4.291825231726374E-6 0.0018905490145754676 0.0 0.10261539537796174 1.802566597325077E-4 70-71 4.291825231726374E-6 0.0019313213542768682 0.0 0.10808318072318113 1.8454848496423406E-4 72-73 4.291825231726374E-6 0.0019463427425879106 0.0 0.11238788143060269 2.1888308681804506E-4 74-75 4.291825231726374E-6 0.0020171578589113955 0.0 0.11586425986830105 2.1888308681804506E-4 76-77 4.291825231726374E-6 0.0021502044410949134 0.0 0.11904235645239444 2.1888308681804506E-4 78-79 4.291825231726374E-6 0.002180247217716998 0.0 0.12119899863133693 2.1888308681804506E-4 80-81 4.291825231726374E-6 0.002182393130332861 0.0 0.12191358753241938 2.29612649897361E-4 82-83 4.291825231726374E-6 0.0021909767807963137 0.0 0.12256594496764178 2.5107177605599286E-4 84-85 4.291825231726374E-6 0.0022081440817232193 0.0 0.1228213085689295 2.5536360128771926E-4 86-87 4.291825231726374E-6 0.0022660837223515253 0.0 0.12296508471419233 2.5750951390358245E-4 88 4.291825231726374E-6 0.00239054665407159 0.0 0.12297366836465579 2.618013391353088E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 30325 0.0 50.086124 1 GTATCAA 53815 0.0 33.448112 1 TCAACGC 64600 0.0 27.165726 4 ATCAACG 65490 0.0 26.79655 3 CAACGCA 66445 0.0 26.392792 5 AACGCAG 67550 0.0 25.991573 6 TATCAAC 68565 0.0 25.819134 2 ACGCAGA 78020 0.0 22.461317 7 CGCAGAG 81510 0.0 21.47936 8 GTACATG 68090 0.0 20.900007 1 TACATGG 69875 0.0 20.058912 2 ACATGGG 69320 0.0 19.605635 3 GCAGAGT 91860 0.0 18.852968 9 GAGTACT 54575 0.0 18.488426 12-13 CAGAGTA 90575 0.0 17.743427 10-11 GTGGTAT 14325 0.0 17.695473 1 AGAGTAC 84125 0.0 17.577005 10-11 CATGGGG 48850 0.0 17.28692 4 TGGTATC 14080 0.0 16.156168 2 GTACTTT 62710 0.0 16.055038 14-15 >>END_MODULE