##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140184_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10627919 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.792820212498796 31.0 30.0 31.0 26.0 34.0 2 30.30865722631119 31.0 30.0 31.0 27.0 34.0 3 29.899924340785812 31.0 30.0 31.0 26.0 34.0 4 33.783902568320286 35.0 33.0 37.0 28.0 37.0 5 33.53753128905104 35.0 33.0 37.0 28.0 37.0 6 33.583254915661286 35.0 33.0 37.0 28.0 37.0 7 33.53551838323194 35.0 33.0 37.0 28.0 37.0 8 33.47025424262266 35.0 33.0 37.0 28.0 37.0 9 34.71181140917615 37.0 33.0 39.0 28.0 39.0 10-11 34.697456764583926 37.0 33.0 39.0 27.5 39.0 12-13 34.566623296620904 37.0 33.0 39.0 27.0 39.0 14-15 35.39439273106993 37.0 33.0 40.0 27.0 41.0 16-17 35.297658130439274 37.0 33.0 40.0 27.0 41.0 18-19 35.462682111145185 37.5 33.5 40.0 27.0 41.0 20-21 35.47403134646906 38.0 33.5 40.0 27.0 41.0 22-23 35.4319483681262 38.0 33.0 40.0 27.0 41.0 24-25 35.42325602876066 38.0 33.0 40.0 27.0 41.0 26-27 35.092030004503485 37.0 33.0 40.0 27.0 41.0 28-29 34.833231502511126 37.0 33.0 40.0 25.5 41.0 30-31 34.77328326083787 37.0 33.0 40.0 25.0 41.0 32-33 34.735296905458725 37.0 33.0 40.0 25.0 41.0 34-35 34.503009498343545 37.0 32.5 40.0 25.0 41.0 36-37 34.40500604661298 37.0 32.0 40.0 25.0 41.0 38-39 34.37192325169342 37.0 32.0 40.0 25.0 41.0 40-41 34.29433725520863 37.0 32.0 40.0 24.0 41.0 42-43 34.28876541841694 37.0 32.0 40.0 24.0 41.0 44-45 34.35902129424278 37.0 32.0 40.0 24.5 41.0 46-47 34.18609019315424 37.0 32.0 40.0 24.0 41.0 48-49 34.16889602926777 37.0 32.0 40.0 24.0 41.0 50-51 34.11095775407516 37.0 32.0 39.5 24.0 41.0 52-53 34.159494988871145 37.0 32.0 39.0 24.0 41.0 54-55 34.25092727474278 37.0 32.0 39.0 24.5 41.0 56-57 34.21065932266771 36.5 32.0 39.0 25.0 40.5 58-59 33.93542494936689 36.0 31.0 39.0 24.0 40.0 60-61 33.610248634686 36.0 31.0 39.0 23.5 40.0 62-63 33.50410842208714 35.5 31.0 39.0 23.5 40.0 64-65 33.308577688035996 35.0 31.0 39.0 23.5 40.0 66-67 33.051214280668724 35.0 31.0 38.0 23.0 40.0 68-69 32.88644960417279 35.0 30.0 38.0 23.0 40.0 70-71 32.866186849804755 35.0 30.5 38.0 24.0 40.0 72-73 32.663909441332976 34.0 30.0 37.0 24.0 40.0 74-75 32.3040985622831 34.0 30.0 37.0 23.0 39.0 76-77 31.37697361575545 33.5 28.5 36.0 22.0 39.0 78-79 31.81943432583602 34.0 30.0 36.0 24.0 39.0 80-81 31.844952949422176 34.0 30.0 36.0 24.5 37.5 82-83 31.868349792790262 34.0 30.0 35.0 25.0 37.0 84-85 31.612538850962473 34.0 30.0 35.0 25.0 37.0 86-87 31.433277497259038 34.0 30.0 35.0 24.5 36.0 88-89 31.39219509386406 34.0 30.0 35.0 25.0 36.0 90-91 31.283064829430586 33.0 30.0 35.0 25.0 36.0 92-93 31.22522362414849 33.0 30.0 35.0 25.0 35.0 94-95 31.43399156675877 33.5 30.0 35.0 25.0 35.0 96-97 31.669775615900377 34.0 30.5 35.0 25.5 35.0 98-99 32.1243456295619 34.0 31.0 35.0 26.5 35.0 100 31.708053920785147 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 22.0 19 218.0 20 1198.0 21 5723.0 22 20993.0 23 54720.0 24 114260.0 25 196677.0 26 295776.0 27 400623.0 28 502559.0 29 592304.0 30 674451.0 31 750673.0 32 824433.0 33 898393.0 34 965150.0 35 1022054.0 36 1067069.0 37 1066484.0 38 852011.0 39 313430.0 40 8695.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.69944228969001 22.88783909625205 15.57115743919388 24.841561174864054 2 14.15846802199188 23.164099629766962 39.94511441085515 22.732317937386007 3 16.730003054378 27.758753046586214 31.90686688426113 23.604377014774656 4 12.251346340234859 20.192976379060433 39.05465379363339 28.501023487071315 5 12.166652756762636 39.4331759585296 36.113918444429245 12.286252840278514 6 28.103053641254878 40.55189820154533 18.80900858890118 12.536039568298616 7 24.36502844348521 34.10271269525345 24.437432095113277 17.09482676614806 8 23.23755948836268 38.16912793558174 21.346079133647894 17.24723344240768 9 24.259175673533985 17.279793058196454 22.28634516125025 36.17468610701932 10-11 23.17619504576049 27.76956326074322 29.912982132263316 19.141259561232975 12-13 23.703445950720674 25.244143496578065 30.02471710311938 21.02769344958188 14-15 21.010562886796695 26.909384937417425 27.261514096104523 24.81853807968136 16-17 20.570039453181472 29.888957037521998 28.011824710466453 21.52917879883008 18-19 20.671708166623542 29.10185182046528 29.638449257136273 20.58799075577491 20-21 21.35875025255008 28.15713248251233 29.506264065562824 20.977853199374763 22-23 21.07142376341032 28.12478788401995 29.493241331758384 21.31054702081135 24-25 20.99206798167669 28.28192074274462 29.38952162678677 21.336489648791922 26-27 21.13377516599615 28.263079437303556 29.27268802674859 21.330457369951702 28-29 21.122190638017262 28.174810381038117 29.315685826063177 21.387313154881447 30-31 21.389123344039252 28.170905360274052 29.16200950255478 21.277961793131915 32-33 21.241862305639298 28.32109585822077 29.131739313047174 21.305302523092756 34-35 21.2576277970892 28.195914001454682 29.19379543823587 21.35266276322025 36-37 21.262616870075586 28.23071217416217 29.147367531690122 21.359303424072117 38-39 21.248218158922736 28.284998018329656 29.109571385855837 21.357212436891775 40-41 21.426723747719482 28.227088679423417 28.964344891041094 21.381842681816007 42-43 21.293984173386175 28.371477612640582 28.811618401722676 21.522919812250564 44-45 21.46271631372379 28.47150811725829 28.516785609174605 21.548989959843322 46-47 21.46730102425584 28.37832422256535 28.418529282344174 21.73584547083464 48-49 21.398899952938972 28.51737801359107 28.415177985020645 21.66854404844931 50-51 21.374647304411003 28.565306674138835 28.378526249391328 21.681519772058834 52-53 21.52147624708118 28.50903802087038 28.230991723473814 21.738494008574627 54-55 21.43685675595397 28.434066896524413 28.35943259035176 21.769643757169863 56-57 21.494752728740497 28.528061950192463 28.30991166156317 21.66727365950387 58-59 21.43227853519941 28.52169408346843 28.360828995733144 21.685198385599016 60-61 21.46551465464734 28.47735299685967 28.339196151318944 21.717936197174048 62-63 21.541126276554788 28.61127795084515 28.226877031189655 21.620718741410407 64-65 21.395287869631993 28.540576220166525 28.33654713628036 21.727588773921124 66-67 21.45181767265449 28.51868700316544 28.241067585498463 21.788427738681612 68-69 21.328527990841753 28.484531356145776 28.375800855945993 21.81113979706648 70-71 21.41857457492248 28.256876000354424 28.38520279998849 21.939346624734604 72-73 21.493605199691263 28.420452151455635 28.287614551759987 21.798328097093115 74-75 21.26705655430692 28.53469494437924 28.34360020973396 21.854648291579878 76-77 21.3993715828376 28.439666021917258 28.40887285233917 21.752089542905974 78-79 21.31961192968391 28.473516673140647 28.2928917151498 21.913979682025648 80-81 21.444379054620875 28.492198566878514 28.255988097737745 21.807434280762873 82-83 21.399895598924406 28.50052231870653 28.363190411644794 21.736391670724274 84-85 21.437653969478582 28.48242094617625 28.361209845474345 21.718715238870825 86-87 21.337317503755795 28.48424490143949 28.403890792240567 21.774546802564156 88-89 21.360250801874695 28.465489787347238 28.34154499391791 21.832714416860156 90-91 21.28447339375362 28.482965271620593 28.48531176536042 21.747249569265367 92-93 21.22743924348594 28.45878872128913 28.529786117376172 21.783985917848764 94-95 21.070161014381103 28.530842695934023 28.60443459350135 21.79456169618352 96-97 21.111803844477922 28.6829067904408 28.62798417911183 21.577305185969443 98-99 22.133225988476244 30.730212225011 28.643430200912846 18.493131585599905 100 21.37759727945595 31.54582451130311 22.521239620665806 24.555338588575136 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2273.0 1 2008.0 2 2914.0 3 4231.5 4 5023.0 5 7571.5 6 10366.5 7 12643.0 8 14260.0 9 14401.5 10 13387.0 11 11881.5 12 12042.0 13 14781.0 14 22664.0 15 34777.0 16 45290.5 17 51674.0 18 55040.5 19 56580.5 20 57341.5 21 58516.0 22 60820.5 23 67148.0 24 79432.5 25 98819.5 26 124535.0 27 153822.5 28 189646.0 29 232075.5 30 273319.0 31 311423.5 32 345200.5 33 372186.5 34 393851.0 35 409925.5 36 422605.0 37 430872.0 38 429960.0 39 422014.0 40 415160.5 41 409374.5 42 403541.0 43 400290.0 44 397320.0 45 396416.5 46 394862.0 47 391522.0 48 387490.5 49 380617.5 50 372893.0 51 362178.0 52 347077.5 53 330121.0 54 312206.5 55 292020.5 56 269884.5 57 245723.0 58 219321.0 59 190606.5 60 160704.5 61 132306.0 62 107001.5 63 84701.5 64 65134.5 65 50317.5 66 38807.5 67 29976.0 68 23454.5 69 17982.5 70 13745.5 71 10422.5 72 7886.5 73 5961.5 74 4409.5 75 3248.5 76 2384.0 77 1690.5 78 1242.0 79 932.0 80 687.0 81 509.5 82 372.0 83 251.0 84 167.0 85 115.0 86 90.5 87 70.0 88 53.5 89 45.0 90 37.0 91 32.0 92 25.5 93 15.5 94 6.5 95 4.0 96 4.0 97 4.0 98 2.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.020502602626158516 3 1.8843199689421795 4 0.4737992451767839 5 0.0 6 1.5995605536700083E-4 7 1.881835945494127E-5 8 0.0 9 0.021857524506914288 10-11 0.1436875836182041 12-13 0.004328222674636493 14-15 4.704589863735318E-6 16-17 5.1750488501088495E-5 18-19 0.07214018097051737 20-21 0.01897677493074395 22-23 6.684109367845178E-4 24-25 1.4130486184812065E-4 26-27 0.004314985042328353 28-29 0.0012561533213520234 30-31 8.138437471107365E-4 32-33 0.002007231157010746 34-35 0.027567212106597475 36-37 0.0 38-39 2.4090321746964607E-5 40-41 0.0011940958658022641 42-43 1.272053306861578E-4 44-45 6.073833220341929E-4 46-47 0.0013474701920878646 48-49 0.004185044094481757 50-51 0.00749468892840459 52-53 0.004589521756928547 54-55 0.018099954194869358 56-57 0.006959303910179564 58-59 0.008099356777408619 60-61 0.00896344904072578 62-63 0.007711537660516064 64-65 0.021221159595153905 66-67 0.0030437602580841603 68-69 0.0026001689715011893 70-71 0.001818988142656948 72-73 6.034080369889127E-4 74-75 1.3536520826937817E-4 76-77 3.583377642793269E-5 78-79 6.060833066353636E-6 80-81 0.0 82-83 3.7599412847568974E-5 84-85 5.102548467832259E-5 86-87 3.8994214428405255E-5 88-89 1.3273871697676423E-5 90-91 2.040428922644687E-5 92-93 0.0021998512481536964 94-95 1.0072201859587464E-4 96-97 1.1236200821770782E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1070.0 20-21 3334.0 22-23 5956.0 24-25 11579.0 26-27 13897.0 28-29 18090.0 30-31 28724.0 32-33 35893.0 34-35 49828.0 36-37 63421.0 38-39 76004.0 40-41 79107.0 42-43 90126.0 44-45 104730.0 46-47 105336.0 48-49 97277.0 50-51 91922.0 52-53 92013.0 54-55 99213.0 56-57 106774.0 58-59 110176.0 60-61 110008.0 62-63 106654.0 64-65 111572.0 66-67 119899.0 68-69 122920.0 70-71 124531.0 72-73 121842.0 74-75 125132.0 76-77 118610.0 78-79 133295.0 80-81 135781.0 82-83 139148.0 84-85 143901.0 86-87 153455.0 88-89 179691.0 90-91 187846.0 92-93 202913.0 94-95 244159.0 96-97 473975.0 98-99 819799.0 100-101 5468318.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.43593555477747 #Duplication Level Percentage of deduplicated Percentage of total 1 93.1174822638522 83.2804914277302 2 4.732016156893152 8.464245841041237 3 1.2054984001740467 3.2344463168806024 4 0.43924474179594325 1.5713705768014743 5 0.19121377561402328 0.8550691456500734 6 0.10432995647848152 0.5598508358425327 7 0.06649019946254849 0.4162629235909751 8 0.03710214383917518 0.26546119562756443 9 0.02666735988431735 0.21465182520268786 >10 0.07883209982092865 1.055740167089907 >50 9.476208108806079E-4 0.053808228899426665 >100 1.7528137428589265E-4 0.028601515643310045 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8818359454941274E-5 0.0 9.409179727470637E-6 0.0 3 0.0 2.822753918241191E-5 0.0 1.8818359454941274E-5 0.0 4 0.0 6.586425809229446E-5 0.0 3.763671890988255E-5 0.0 5 0.0 6.586425809229446E-5 0.0 3.763671890988255E-5 0.0 6 1.4113769591205956E-4 6.586425809229446E-5 0.0 6.586425809229446E-5 0.0 7 1.4113769591205956E-4 6.586425809229446E-5 0.0 1.1291015672964764E-4 0.0 8 1.4113769591205956E-4 9.409179727470637E-5 0.0 1.1291015672964764E-4 9.409179727470637E-6 9 1.4113769591205956E-4 1.8818359454941274E-4 0.0 1.505468756395302E-4 9.409179727470637E-6 10-11 1.4584228577579488E-4 1.8818359454941274E-4 0.0 1.8347900468567742E-4 9.409179727470637E-6 12-13 1.505468756395302E-4 1.8818359454941274E-4 0.0 2.305249033230306E-4 9.409179727470637E-6 14-15 1.505468756395302E-4 2.587524425054425E-4 0.0 2.728662120966485E-4 2.822753918241191E-5 16-17 2.4934326277797187E-4 2.6345703236917785E-4 0.0 2.822753918241191E-4 2.822753918241191E-5 18-19 2.5404785264170716E-4 2.7757080196038383E-4 0.0 2.9168457155158976E-4 3.763671890988255E-5 20-21 2.5404785264170716E-4 3.10502931006531E-4 0.0 3.1520752087026637E-4 4.7045898637353184E-5 22-23 2.6816162223291314E-4 3.575488296438842E-4 0.0 3.293212904614723E-4 5.17504885010885E-5 24-25 2.869799816878544E-4 3.8107177896256077E-4 0.0 3.434350600526782E-4 5.645507836482382E-5 26-27 2.9168457155158976E-4 3.9518554855376675E-4 0.0 3.716625992350902E-4 5.645507836482382E-5 28-29 3.1991211073400166E-4 4.045947282812374E-4 0.0 6.915747099690918E-4 5.645507836482382E-5 30-31 3.293212904614723E-4 4.422314471911199E-4 0.0 0.002022973641406187 5.645507836482382E-5 32-33 3.3873047018894293E-4 4.422314471911199E-4 0.0 0.005010388204878114 5.645507836482382E-5 34-35 3.575488296438842E-4 5.080957052834144E-4 0.0 0.008242441441264278 6.586425809229446E-5 36-37 3.575488296438842E-4 5.880737329669147E-4 0.0 0.013737402402107128 6.586425809229446E-5 38-39 3.575488296438842E-4 6.115966822855914E-4 0.0 0.02286901132761738 7.52734378197651E-5 40-41 3.575488296438842E-4 6.727563505141505E-4 0.0 0.032320532363861634 7.52734378197651E-5 42-43 3.575488296438842E-4 6.962792998328271E-4 0.0 0.040233652514664445 7.997802768350042E-5 44-45 3.622534195076195E-4 7.903710971075335E-4 0.0 0.0498451296062757 9.409179727470637E-5 46-47 3.6695800937135484E-4 8.844628943822398E-4 0.0 0.06011995386867364 1.0820556686591232E-4 48-49 3.716625992350902E-4 8.938720741097104E-4 0.0 0.0688657864253576 1.1291015672964764E-4 50-51 4.187084978724433E-4 9.409179727470637E-4 0.0 0.07886774447565888 1.1291015672964764E-4 52-53 4.328222674636493E-4 9.409179727470637E-4 0.0 0.08840394812945036 1.270239263208536E-4 54-55 4.375268573273846E-4 9.45622562610799E-4 0.0 0.09791192424405945 1.4584228577579488E-4 56-57 4.422314471911199E-4 9.503271524745342E-4 0.0 0.1068035990865192 1.5995605536700083E-4 58-59 4.422314471911199E-4 9.503271524745342E-4 0.0 0.11493783496091756 1.9759277427688337E-4 60-61 4.5164062691859056E-4 9.644409220657402E-4 0.0 0.12315675345286317 1.9759277427688337E-4 62-63 4.89277345828473E-4 9.92668461248152E-4 0.0 0.1327305938255645 2.07001954004354E-4 64-65 4.89277345828473E-4 0.001110283207841535 0.0 0.14164579161734298 2.07001954004354E-4 66-67 5.080957052834143E-4 0.0011243969774327412 0.0 0.14845333315016795 2.1170654386808933E-4 68-69 5.17504885010885E-4 0.001166738286206359 0.0 0.15611240544832905 2.1641113373182464E-4 70-71 5.269140647383556E-4 0.0011902612355250354 0.0 0.1620731208056817 2.1641113373182464E-4 72-73 5.786645532394442E-4 0.0011996704152525063 0.0 0.16771862864216408 2.3522949318676592E-4 74-75 5.833691431031795E-4 0.0012231933645711827 0.0 0.17208448803571047 2.3522949318676592E-4 76-77 5.927783228306501E-4 0.0012796484429360064 0.0 0.17602693434152067 2.3522949318676592E-4 78-79 5.927783228306501E-4 0.0013078759821184185 0.0 0.17830395583556857 2.3522949318676592E-4 80-81 5.927783228306501E-4 0.0013125805719821537 0.0 0.17908962234281237 2.446386729142365E-4 82-83 5.927783228306501E-4 0.0013266943415733597 0.0 0.18019049637092643 2.6345703236917785E-4 84-85 5.927783228306501E-4 0.0013502172908920365 0.0 0.1805997956890714 2.6345703236917785E-4 86-87 5.927783228306501E-4 0.0013549218807557717 0.0 0.18074093338498345 2.6345703236917785E-4 88 6.21005862013062E-4 0.0014113769591205954 0.0 0.18075034256471093 2.6345703236917785E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10540 0.0 47.01463 1 GTATCAA 19215 0.0 34.049267 1 TCAACGC 24480 0.0 25.72297 4 ATCAACG 24495 0.0 25.628332 3 CAACGCA 25530 0.0 24.846706 5 TATCAAC 25805 0.0 24.766523 2 AACGCAG 25590 0.0 24.468273 6 ACGCAGA 29580 0.0 20.972692 7 CGCAGAG 29920 0.0 20.472603 8 GTACATG 24780 0.0 19.793463 1 TACATGG 25105 0.0 19.11797 2 ACATGGG 25075 0.0 18.285511 3 AGAGTAC 31265 0.0 17.768383 10-11 GCAGAGT 34280 0.0 17.49597 9 CAGAGTA 34145 0.0 16.068186 9 GAGTACT 20735 0.0 15.904451 12-13 GTGGTAT 5415 0.0 15.549938 1 CATGGGG 18300 0.0 15.1402855 4 AGTACTT 23885 0.0 15.04724 12-13 GTACTTT 24305 0.0 13.793948 14-15 >>END_MODULE