##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140183_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10224735 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.81523971036902 31.0 30.0 31.0 26.0 34.0 2 30.30992451149101 31.0 30.0 31.0 27.0 34.0 3 29.890586601999953 31.0 30.0 31.0 26.0 34.0 4 33.77616759749764 35.0 33.0 37.0 28.0 37.0 5 33.52829075765778 35.0 33.0 37.0 28.0 37.0 6 33.578824194465675 35.0 33.0 37.0 28.0 37.0 7 33.53494716488985 35.0 33.0 37.0 28.0 37.0 8 33.46813858745483 35.0 33.0 37.0 28.0 37.0 9 34.70775389288818 37.0 33.0 39.0 28.0 39.0 10-11 34.70421096488075 37.0 33.0 39.0 27.5 39.0 12-13 34.56485263432255 37.0 33.0 39.0 27.0 39.0 14-15 35.39982072885019 37.0 33.0 40.0 27.0 41.0 16-17 35.30351495662235 37.0 33.0 40.0 27.0 41.0 18-19 35.46667361061191 37.5 33.5 40.0 27.0 41.0 20-21 35.485635976838665 38.0 33.5 40.0 27.0 41.0 22-23 35.43344090319509 38.0 33.0 40.0 27.0 41.0 24-25 35.423837397639055 38.0 33.0 40.0 27.0 41.0 26-27 35.12093713107395 37.0 33.0 40.0 27.0 41.0 28-29 34.875283032030254 37.0 33.0 40.0 26.0 41.0 30-31 34.8207668573321 37.0 33.0 40.0 25.5 41.0 32-33 34.77347887742385 37.0 33.0 40.0 25.5 41.0 34-35 34.54366241346018 37.0 33.0 40.0 25.0 41.0 36-37 34.43928397244912 37.0 32.5 40.0 25.0 41.0 38-39 34.41352419832863 37.0 32.0 40.0 25.0 41.0 40-41 34.325770678592654 37.0 32.0 40.0 24.5 41.0 42-43 34.326681319604155 37.0 32.0 40.0 24.5 41.0 44-45 34.38293483277586 37.0 32.0 40.0 24.5 41.0 46-47 34.21786269497761 37.0 32.0 40.0 24.0 41.0 48-49 34.201667266878985 37.0 32.0 40.0 24.0 41.0 50-51 34.13820765842004 37.0 32.0 39.5 24.0 41.0 52-53 34.1915271675235 37.0 32.0 39.0 24.0 41.0 54-55 34.28724074370228 37.0 32.0 39.0 24.5 41.0 56-57 34.242556851657525 36.5 32.0 39.0 25.0 41.0 58-59 33.974902065792485 36.0 31.0 39.0 24.0 40.0 60-61 33.651897438893634 36.0 31.0 39.0 23.5 40.0 62-63 33.542176643645334 36.0 31.0 39.0 23.5 40.0 64-65 33.34541706612241 35.0 31.0 39.0 23.5 40.0 66-67 33.1001136740845 35.0 31.0 38.0 23.0 40.0 68-69 32.930447060855116 35.0 30.0 38.0 23.0 40.0 70-71 32.90757399156263 35.0 30.5 38.0 24.0 40.0 72-73 32.714375572594236 34.0 30.0 37.0 24.0 40.0 74-75 32.35348925948836 34.0 30.0 37.0 23.0 39.0 76-77 31.423356770594136 33.5 28.5 36.0 22.5 39.0 78-79 31.87353292251963 34.0 30.0 36.0 24.0 39.0 80-81 31.893141670079576 34.0 30.0 36.0 24.5 38.0 82-83 31.913839753193397 34.0 30.0 35.0 25.0 37.0 84-85 31.650550991388673 34.0 30.0 35.0 25.0 37.0 86-87 31.462642651647396 34.0 30.0 35.0 24.5 36.0 88-89 31.420058946024856 34.0 30.0 35.0 25.0 36.0 90-91 31.312908562907168 33.5 30.0 35.0 25.0 36.0 92-93 31.254270190990503 33.0 30.0 35.0 25.0 35.5 94-95 31.44656428483619 33.5 30.0 35.0 25.0 35.0 96-97 31.68203926535289 34.0 30.5 35.0 25.5 35.0 98-99 32.12887168437125 34.0 31.0 35.0 26.5 35.0 100 31.708498110981143 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 16.0 19 157.0 20 1084.0 21 5313.0 22 19288.0 23 51744.0 24 107391.0 25 186676.0 26 281780.0 27 381555.0 28 479023.0 29 566297.0 30 645746.0 31 721535.0 32 794882.0 33 864157.0 34 929027.0 35 987529.0 36 1031098.0 37 1029584.0 38 827437.0 39 305557.0 40 7858.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.58329531278805 23.088715746667273 15.526064978701159 24.80192396184351 2 14.21015711762903 23.352466852520607 39.77709265916723 22.660283370683135 3 16.691035544943166 27.878179460917423 32.088326328962616 23.342458665176796 4 12.309243700121437 20.28299411603203 39.115288156025876 28.292474027820656 5 12.10046622257996 39.45142805726899 36.2166335932587 12.231472126892347 6 28.021168305831356 40.58692071763335 18.893358448935523 12.498552527599777 7 24.13481620795062 34.134361428438 24.70874795288093 17.02207441073045 8 23.17826329973344 38.1462795857301 21.454785869756037 17.220671244780426 9 24.136735909874695 17.227884150820437 22.427429431374723 36.20795050793015 10-11 23.0020155577671 27.774668104853667 30.102833700470622 19.120482636908616 12-13 23.568663876980473 25.354937752388224 30.121940532424237 20.95445783820707 14-15 20.93835320084673 27.031270844067112 27.334320351868392 24.69605560321777 16-17 20.456813018201313 29.95416847417152 28.166967334738064 21.422051172889102 18-19 20.55457680354639 29.21374679693951 29.7691682400076 20.462508159506505 20-21 21.226326579371108 28.294329884702783 29.66246071102983 20.816882824896275 22-23 20.966082374688792 28.233863962548796 29.60926091678583 21.190792745976587 24-25 20.907985746319817 28.340072310187715 29.522084215931077 21.22985772756139 26-27 21.006312819691498 28.404552099140457 29.424222541841566 21.164912539326476 28-29 20.965224741281013 28.29192818744255 29.534342625165642 21.208504446110798 30-31 21.25820922646196 28.271557669676106 29.40130374335762 21.068929360504313 32-33 21.16311072212076 28.434169421070276 29.290510089474186 21.11220976733478 34-35 21.159123196421483 28.352993232441477 29.319661493927374 21.16822207720967 36-37 21.174851341739284 28.360501812032734 29.248812896125862 21.21583395010212 38-39 21.16046240366965 28.423457716675575 29.218352187038843 21.19772769261593 40-41 21.334461907937765 28.342911208758398 29.083802708155986 21.23882417514785 42-43 21.17686896635576 28.52618142738994 28.94431009986921 21.352639506385092 44-45 21.339853295225414 28.5629432459801 28.698357366506656 21.398846092287833 46-47 21.329661109881172 28.526529391926143 28.583169705760035 21.56063979243265 48-49 21.30141407697484 28.64419673969979 28.54948647761565 21.50490270570972 50-51 21.278300289911677 28.718960715114417 28.490561750206716 21.512177244767187 52-53 21.394538409122692 28.644712457021242 28.37548539670448 21.585263737151582 54-55 21.351291714985184 28.586581411330155 28.47609844092256 21.5860284327621 56-57 21.3854148449119 28.659939561802734 28.44333275037181 21.51131284291356 58-59 21.313985812371055 28.644851018493085 28.488169474389334 21.552993694746526 60-61 21.36831863710166 28.59554236114207 28.49540328309358 21.540735718662695 62-63 21.396622599494812 28.72041791919719 28.393790999362096 21.4891684819459 64-65 21.252199414820126 28.705156265346567 28.48916732202064 21.553476997812666 66-67 21.305993796214405 28.68565334266237 28.410212653916027 21.598140207207198 68-69 21.20507231908426 28.643575136528938 28.521270931113225 21.630081613273582 70-71 21.264137808006744 28.473960950634236 28.57377578901134 21.68812545234768 72-73 21.348395357585773 28.58990129794779 28.38082024555523 21.680883098911206 74-75 21.155666965718396 28.680868110917746 28.465834328893752 21.697630594470102 76-77 21.281554435913677 28.598110343226008 28.525615545342113 21.5947196755182 78-79 21.22227474756414 28.570812453471184 28.46150849804287 21.745404300921802 80-81 21.256812516678643 28.65383999168142 28.420810790648993 21.66853670099095 82-83 21.279874394825303 28.646341320525604 28.49336495093902 21.580419333710076 84-85 21.288464509935604 28.64014277102787 28.529472430109383 21.541920288927145 86-87 21.203033643495182 28.635936561072334 28.54397481433021 21.617054981102275 88-89 21.203864291062416 28.643752393013973 28.514701601798937 21.637681714124675 90-91 21.129519408409948 28.6904073068268 28.612499700087103 21.567573584676154 92-93 21.169501708011033 28.576349199157104 28.71533648100122 21.538812611830647 94-95 20.94753935834188 28.695988822373884 28.749067511641275 21.607404307642962 96-97 20.989289373709713 28.856209646511143 28.767019608005523 21.38748137177362 98-99 22.021897086521243 30.82556912186785 28.82263765362611 18.329896137984797 100 21.226840031329612 31.75260060997525 22.66139278616045 24.359166572534683 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2207.0 1 1916.0 2 2718.5 3 3942.5 4 4674.5 5 6984.0 6 9583.5 7 11854.0 8 13596.0 9 13916.5 10 12918.5 11 11457.5 12 11707.0 13 14534.5 14 22254.5 15 33739.0 16 43750.5 17 50090.5 18 53464.0 19 55373.0 20 56545.0 21 57938.5 22 60472.0 23 67034.0 24 79425.0 25 98049.5 26 122631.0 27 150705.5 28 183970.0 29 223196.0 30 261925.0 31 297732.0 32 331044.0 33 357301.0 34 377477.0 35 392745.5 36 405703.5 37 415960.5 38 417955.5 39 414903.0 40 410904.5 41 405055.5 42 398063.0 43 391020.5 44 384321.5 45 381095.5 46 377213.5 47 371533.0 48 365841.0 49 357673.5 50 349280.0 51 338276.0 52 323753.5 53 307712.5 54 289435.5 55 269001.5 56 247735.5 57 224942.0 58 200105.0 59 174374.0 60 147647.5 61 121797.0 62 98598.0 63 78010.0 64 60238.0 65 46356.5 66 35643.5 67 27719.0 68 21614.0 69 16498.0 70 12555.5 71 9556.5 72 7236.5 73 5328.0 74 3862.0 75 2864.5 76 2102.0 77 1520.5 78 1097.0 79 797.5 80 562.0 81 402.0 82 308.5 83 215.5 84 159.0 85 122.0 86 93.5 87 79.5 88 55.5 89 31.5 90 17.0 91 12.0 92 10.5 93 6.5 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.019677771599948556 3 1.8656913846666932 4 0.4720806945118871 5 4.890102286269522E-5 6 1.4670306858808566E-4 7 0.0 8 0.0 9 0.021203483513264648 10-11 0.14335823862427732 12-13 0.003980543261023391 14-15 2.9340613717617132E-5 16-17 4.40109205764257E-5 18-19 0.07196763534702855 20-21 0.019465811188283107 22-23 7.485723184708458E-4 24-25 1.6155502488265596E-4 26-27 0.002386633090447268 28-29 0.001059860010156992 30-31 8.651370748250665E-4 32-33 0.002060246029849219 34-35 0.02694303983177492 36-37 4.970601131080169E-6 38-39 4.5012407670174286E-5 40-41 0.0012238498417834122 42-43 1.065643919144014E-4 44-45 5.375985411725986E-4 46-47 0.001381073509991084 48-49 0.0035469380574020995 50-51 0.007554732003658325 52-53 0.0051856643346601195 54-55 0.018400599296998343 56-57 0.0069245611091704505 58-59 0.008107530300455534 60-61 0.00924735818278102 62-63 0.007837220811622138 64-65 0.020892485004326757 66-67 0.0033628388971196827 68-69 0.0027559113717508152 70-71 0.0018563553415357917 72-73 6.810411350637792E-4 74-75 2.2410658848536714E-4 76-77 1.1058516261671034E-4 78-79 2.4929622118657647E-5 80-81 6.3326590106930116E-6 82-83 3.862712999651583E-5 84-85 2.6200357936189944E-5 86-87 6.671629469441335E-6 88-89 2.7241702688143118E-5 90-91 2.789886660854403E-5 92-93 0.0020399941935323167 94-95 1.179197482413375E-4 96-97 8.435126781872605E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1049.0 20-21 3073.0 22-23 5350.0 24-25 9853.0 26-27 11681.0 28-29 15859.0 30-31 25791.0 32-33 33135.0 34-35 46258.0 36-37 58534.0 38-39 68792.0 40-41 72540.0 42-43 83503.0 44-45 97436.0 46-47 97767.0 48-49 88827.0 50-51 83685.0 52-53 84433.0 54-55 91877.0 56-57 98883.0 58-59 102069.0 60-61 101033.0 62-63 98920.0 64-65 104053.0 66-67 111897.0 68-69 115038.0 70-71 115719.0 72-73 114043.0 74-75 117870.0 76-77 112499.0 78-79 125909.0 80-81 128015.0 82-83 132630.0 84-85 136989.0 86-87 146782.0 88-89 170588.0 90-91 179546.0 92-93 194268.0 94-95 234147.0 96-97 458393.0 98-99 790046.0 100-101 5355955.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.49204940335417 #Duplication Level Percentage of deduplicated Percentage of total 1 93.70593983012954 84.79642536495815 2 4.452743126493248 8.058757019661455 3 1.0453222940651348 2.837800700309091 4 0.3575796400150505 1.2943245779950219 5 0.16529622371323796 0.7478997021223106 6 0.09328199948120017 0.5064767583297854 7 0.052629014984077606 0.3333755196792312 8 0.03639758463090337 0.26349536212659774 9 0.0228786106139481 0.1863299125761745 >10 0.0671478277180526 0.9164703269793079 >50 6.642372247858426E-4 0.03961362677270512 >100 1.1961093080827233E-4 0.019031128490143254 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9560409145078087E-5 2 0.0 9.780204572539043E-6 0.0 0.0 1.9560409145078087E-5 3 0.0 9.780204572539043E-6 0.0 0.0 1.9560409145078087E-5 4 0.0 6.846143200777331E-5 0.0 0.0 1.9560409145078087E-5 5 0.0 7.824163658031235E-5 0.0 0.0 1.9560409145078087E-5 6 3.912081829015617E-5 7.824163658031235E-5 0.0 9.780204572539043E-6 1.9560409145078087E-5 7 3.912081829015617E-5 7.824163658031235E-5 0.0 1.9560409145078087E-5 1.9560409145078087E-5 8 3.912081829015617E-5 7.824163658031235E-5 0.0 1.9560409145078087E-5 1.9560409145078087E-5 9 3.912081829015617E-5 1.1736245487046853E-4 0.0 2.9340613717617132E-5 2.9340613717617132E-5 10-11 5.8681227435234263E-5 1.1736245487046853E-4 0.0 5.8681227435234263E-5 3.423071600388665E-5 12-13 5.8681227435234263E-5 1.1736245487046853E-4 0.0 6.84614320077733E-5 3.912081829015617E-5 14-15 5.8681227435234263E-5 1.760436823057028E-4 0.0 8.313173886658186E-5 3.912081829015617E-5 16-17 1.0758225029792948E-4 1.760436823057028E-4 0.0 8.80218411528514E-5 3.912081829015617E-5 18-19 1.1736245487046853E-4 1.8582388687824185E-4 0.0 8.80218411528514E-5 3.912081829015617E-5 20-21 1.320327617292771E-4 2.1027439830958945E-4 0.0 1.0269214801165996E-4 4.40109205764257E-5 22-23 1.4670306858808566E-4 2.445051143134761E-4 0.0 1.4670306858808566E-4 4.890102286269522E-5 24-25 1.7115358001943326E-4 2.934061371761713E-4 0.0 1.6626347773316373E-4 4.890102286269522E-5 26-27 1.760436823057028E-4 3.129665463212494E-4 0.0 2.1027439830958945E-4 5.8681227435234263E-5 28-29 1.8582388687824183E-4 3.129665463212494E-4 9.780204572539043E-6 4.2543889890544844E-4 5.8681227435234263E-5 30-31 1.8582388687824183E-4 3.7164777375648365E-4 9.780204572539043E-6 0.0013447781287241184 5.8681227435234263E-5 32-33 1.9071398916451136E-4 3.7164777375648365E-4 9.780204572539043E-6 0.003447522111820013 6.846143200777331E-5 34-35 1.956040914507809E-4 4.1076859204663984E-4 9.780204572539043E-6 0.006435374608730691 1.0758225029792948E-4 36-37 1.956040914507809E-4 4.4988941033679604E-4 9.780204572539043E-6 0.010728884416075331 1.12472352584199E-4 38-39 1.956040914507809E-4 4.5966961490933505E-4 9.780204572539043E-6 0.01788310406088764 1.2225255715673806E-4 40-41 1.956040914507809E-4 5.085706377720302E-4 9.780204572539043E-6 0.025208477285719386 1.2714265944300756E-4 42-43 1.956040914507809E-4 5.232409446308388E-4 9.780204572539043E-6 0.03221110375965734 1.3692286401554662E-4 44-45 2.004941937370504E-4 5.965924789248817E-4 9.780204572539043E-6 0.04049004693031164 1.4670306858808566E-4 46-47 2.0538429602331992E-4 6.357132972150378E-4 9.780204572539043E-6 0.04925800032959289 1.4670306858808566E-4 48-49 2.0538429602331992E-4 6.454935017875769E-4 9.780204572539043E-6 0.05700392235104382 1.4670306858808566E-4 50-51 2.0538429602331992E-4 7.188450360816198E-4 9.780204572539043E-6 0.06452489966732634 1.564832731606247E-4 52-53 2.0538429602331992E-4 7.237351383678893E-4 9.780204572539043E-6 0.07328796296432133 1.6626347773316373E-4 54-55 2.1027439830958945E-4 7.286252406541588E-4 9.780204572539043E-6 0.08199234503388107 1.760436823057028E-4 56-57 2.1516450059585896E-4 7.432955475129673E-4 9.780204572539043E-6 0.08983117899877112 1.760436823057028E-4 58-59 2.1516450059585896E-4 7.432955475129673E-4 9.780204572539043E-6 0.09704407987101867 1.760436823057028E-4 60-61 2.2494470516839802E-4 7.481856497992368E-4 9.780204572539043E-6 0.10461884831245016 1.760436823057028E-4 62-63 2.2494470516839802E-4 7.775262635168539E-4 9.780204572539043E-6 0.11286356076710057 1.760436823057028E-4 64-65 2.2494470516839802E-4 8.606580023834358E-4 9.780204572539043E-6 0.12030140634451651 1.760436823057028E-4 66-67 2.2494470516839802E-4 8.606580023834358E-4 9.780204572539043E-6 0.12733826353445835 1.760436823057028E-4 68-69 2.2494470516839802E-4 8.89998616101053E-4 9.780204572539043E-6 0.134825010134737 1.8582388687824183E-4 70-71 2.2494470516839802E-4 8.997788206735921E-4 9.780204572539043E-6 0.14103054993601302 1.8582388687824183E-4 72-73 2.2494470516839802E-4 9.046689229598615E-4 9.780204572539043E-6 0.14606246518858435 1.8582388687824183E-4 74-75 2.2494470516839802E-4 9.340095366774787E-4 9.780204572539043E-6 0.1501114698816155 1.8582388687824183E-4 76-77 2.3472490974093705E-4 9.731303549676349E-4 9.780204572539043E-6 0.15403822201748996 1.8582388687824183E-4 78-79 2.445051143134761E-4 9.926907641127128E-4 9.780204572539043E-6 0.15644904244462082 1.8582388687824183E-4 80-81 2.445051143134761E-4 9.975808663989824E-4 9.780204572539043E-6 0.1572070082989926 1.8582388687824183E-4 82-83 2.445051143134761E-4 9.975808663989824E-4 9.780204572539043E-6 0.1578769523122115 1.9071398916451136E-4 84-85 2.445051143134761E-4 9.975808663989824E-4 9.780204572539043E-6 0.15820947926767784 1.956040914507809E-4 86-87 2.445051143134761E-4 0.0010269214801165996 9.780204572539043E-6 0.15838552294998354 1.956040914507809E-4 88 2.445051143134761E-4 0.0010660422984067558 9.780204572539043E-6 0.15840019325684235 1.956040914507809E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10775 0.0 47.5851 1 GTATCAA 18685 0.0 32.65239 1 ATCAACG 23230 0.0 25.29726 3 TCAACGC 23250 0.0 25.227255 4 CAACGCA 24020 0.0 24.544563 5 TATCAAC 24910 0.0 23.880682 2 AACGCAG 24685 0.0 23.48175 6 ACGCAGA 28490 0.0 20.287418 7 CGCAGAG 28840 0.0 19.739298 8 GTACATG 22850 0.0 18.770134 1 TACATGG 23755 0.0 17.377756 2 AGAGTAC 30305 0.0 17.366276 10-11 TATACCG 865 0.0 17.255005 5 GTGGTAT 5470 0.0 17.106024 1 ACATGGG 23700 0.0 16.720942 3 GCAGAGT 32985 0.0 16.592577 9 GAGTACT 20750 0.0 16.334663 12-13 CAGAGTA 33105 0.0 16.006401 9 TGGTATC 5270 0.0 15.425338 2 AGTACTT 23880 0.0 14.982182 12-13 >>END_MODULE