##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140181_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11166958 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.789073085078318 31.0 30.0 31.0 26.0 34.0 2 30.282592179535374 31.0 30.0 31.0 27.0 34.0 3 29.85291589705988 31.0 30.0 31.0 26.0 34.0 4 33.73586978656139 35.0 33.0 37.0 28.0 37.0 5 33.49189286822786 35.0 33.0 37.0 28.0 37.0 6 33.535959569293624 35.0 33.0 37.0 28.0 37.0 7 33.49742982824866 35.0 33.0 37.0 28.0 37.0 8 33.421776369177714 35.0 33.0 37.0 28.0 37.0 9 34.646504177771604 37.0 33.0 39.0 28.0 39.0 10-11 34.65279993889115 37.0 33.0 39.0 27.5 39.0 12-13 34.50693689364641 37.0 33.0 39.0 27.0 39.0 14-15 35.339678361824234 37.0 33.0 40.0 27.0 41.0 16-17 35.254410601347296 37.0 33.0 40.0 27.0 41.0 18-19 35.41335849924393 37.5 33.5 40.0 27.0 41.0 20-21 35.43219815134443 38.0 33.0 40.0 27.0 41.0 22-23 35.38434336169275 37.5 33.0 40.0 27.0 41.0 24-25 35.387803027456414 37.0 33.0 40.0 27.0 41.0 26-27 35.0745377242409 37.0 33.0 40.0 27.0 41.0 28-29 34.830834930338796 37.0 33.0 40.0 26.0 41.0 30-31 34.773285847174236 37.0 33.0 40.0 25.0 41.0 32-33 34.73031143911358 37.0 33.0 40.0 25.5 41.0 34-35 34.509439303732194 37.0 32.5 40.0 25.0 41.0 36-37 34.408213761858974 37.0 32.0 40.0 25.0 41.0 38-39 34.37839343248351 37.0 32.0 40.0 25.0 41.0 40-41 34.295615386997305 37.0 32.0 40.0 24.5 41.0 42-43 34.30188699746591 37.0 32.0 40.0 24.5 41.0 44-45 34.366099611729396 37.0 32.0 40.0 24.5 41.0 46-47 34.20540749509081 37.0 32.0 40.0 24.0 41.0 48-49 34.18905303380225 37.0 32.0 40.0 24.0 41.0 50-51 34.13920151095898 37.0 32.0 39.5 24.0 41.0 52-53 34.18399227090305 37.0 32.0 39.0 24.0 41.0 54-55 34.29682023235985 37.0 32.0 39.0 24.5 41.0 56-57 34.27055589538778 36.5 32.0 39.0 25.0 40.5 58-59 34.00542363323222 36.0 31.0 39.0 24.0 40.0 60-61 33.688553651194184 36.0 31.0 39.0 23.5 40.0 62-63 33.59714541079147 36.0 31.0 39.0 23.5 40.0 64-65 33.4095496819597 35.5 31.0 39.0 23.5 40.0 66-67 33.17093232355842 35.0 31.0 38.5 23.0 40.0 68-69 33.00872306640033 35.0 30.5 38.0 23.0 40.0 70-71 32.99587811923786 35.0 31.0 38.0 24.0 40.0 72-73 32.80242794430822 34.5 30.0 37.5 24.0 40.0 74-75 32.44740787144491 34.0 30.0 37.0 23.0 39.0 76-77 31.497039254381214 33.5 28.5 36.0 22.5 39.0 78-79 31.947697800200825 34.0 30.0 36.0 24.0 39.0 80-81 31.960925406156086 34.0 30.0 36.0 24.5 38.5 82-83 31.970368419084004 34.0 30.0 35.5 25.0 37.0 84-85 31.698750408701457 34.0 30.0 35.0 25.0 37.0 86-87 31.50098730800333 34.0 30.0 35.0 25.0 36.5 88-89 31.455945118243847 34.0 30.0 35.0 25.0 36.0 90-91 31.33604350686047 34.0 30.0 35.0 25.0 36.0 92-93 31.26642746387834 33.0 30.0 35.0 25.0 35.5 94-95 31.452140626944118 33.5 30.0 35.0 25.0 35.0 96-97 31.690389566439855 34.0 30.5 35.0 25.5 35.0 98-99 32.13410709282537 34.0 31.0 35.0 26.5 35.0 100 31.71263186561174 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 27.0 19 188.0 20 1226.0 21 6313.0 22 21535.0 23 56892.0 24 117119.0 25 202204.0 26 304355.0 27 411527.0 28 516357.0 29 615683.0 30 704195.0 31 786923.0 32 867494.0 33 943410.0 34 1016694.0 35 1076652.0 36 1119044.0 37 1113777.0 38 914470.0 39 360310.0 40 10561.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.78921851411996 23.968120951113097 15.717942164732776 24.52471837003417 2 13.758370386267094 23.902156250554203 40.544322987770876 21.795150375407825 3 16.366773831246007 28.65873732772915 32.37773533069558 22.59675351032927 4 11.917907225810469 20.63345947236846 40.16154218962896 27.287091112192112 5 11.700081920265468 39.84543325862482 36.69739542270965 11.757089398400066 6 26.98394887912953 41.660459359255434 19.29738891904734 12.058202842567699 7 23.35516082356538 34.49623433705043 25.524516166354346 16.624088673029842 8 22.309907496741726 39.10372009995918 22.009100419290554 16.577271984008537 9 23.761222932400866 17.55241548316829 23.078388555296005 35.60797302913484 10-11 22.542077337227017 28.34624816183081 30.596668574228225 18.515005926713943 12-13 22.956502520110533 25.85105083972564 30.675845809704754 20.516600830459065 14-15 20.442381015598922 27.578966786611304 27.793107478021657 24.18554471976812 16-17 20.009233493339657 30.605802145965583 28.521308114938588 20.863656245756175 18-19 20.128072122086262 29.849158514870254 30.05889295863217 19.96387640441131 20-21 20.775043226145154 28.954935296385358 29.889680669610087 20.380340807859398 22-23 20.492623579227164 28.82278303979154 29.873812015166855 20.81078136581444 24-25 20.408400276268612 29.01536254473352 29.76895605147984 20.807281127518028 26-27 20.60228170211521 28.998625479572304 29.61281185492236 20.786280963390126 28-29 20.584514749744084 28.901953413689835 29.73486253978459 20.778669296781494 30-31 20.87898874533681 28.91386425103164 29.498850233328383 20.70829677030317 32-33 20.77549731447611 29.056929893525798 29.43836625417725 20.729206537820847 34-35 20.748278980090713 28.96022582100668 29.526259710466373 20.765235488436232 36-37 20.813897518726137 28.876582188455924 29.499373349024456 20.81014694379349 38-39 20.724316176248887 29.031140130725735 29.490437973643886 20.754105719381496 40-41 20.88419051812684 28.932893543320876 29.376702383905428 20.806213554646856 42-43 20.75073627884597 29.093321202298295 29.199340514628002 20.956602004227737 44-45 20.872040614328373 29.110123408979184 29.014246222015842 21.003589754676597 46-47 20.89579429127498 28.984242846988074 28.943826001345645 21.1761368603913 48-49 20.86375114833826 29.119331786492996 28.944622981443967 21.072294083724774 50-51 20.78575662194092 29.125837251667658 28.962077079696662 21.126329046694753 52-53 20.96484878105609 29.113336297430042 28.774727146529997 21.147087774983873 54-55 20.89636037862664 28.998029435853283 28.97117838070792 21.134431804812156 56-57 20.971939216920994 29.115728010527793 28.80062839419381 21.111704378357405 58-59 20.906180457358587 29.094487187539013 28.859440643550787 21.139891711551613 60-61 20.941722617182844 29.07226265440763 28.84600883803327 21.14000589037625 62-63 20.985117682348182 29.128517882043354 28.79928916230403 21.087075273304436 64-65 20.886229423224677 29.071112092206707 28.86973829216294 21.172920192405677 66-67 20.93775174947497 29.117976824872766 28.715589557819598 21.228681867832663 68-69 20.854603830209534 29.095965880342327 28.78248392497671 21.26694636447143 70-71 20.897470586393332 28.88117485069924 28.848466726029738 21.372887836877695 72-73 20.961764526060318 29.008611934204946 28.736126878107783 21.29349666162695 74-75 20.760056051690192 29.06396929848503 28.81400659956112 21.361968050263656 76-77 20.88010387711295 29.01094554932372 28.879308253114267 21.229642320449063 78-79 20.800768101927577 29.078138529498403 28.74987383355118 21.37121953502284 80-81 20.96703513502203 29.072404330748675 28.68718052956615 21.27338000466315 82-83 20.96120963073337 29.001598463233975 28.834199865459887 21.202992040572767 84-85 20.963736979138375 29.008026671849795 28.846331127667966 21.18190522134386 86-87 20.77962287264517 29.089732671501928 28.878565675830348 21.252078780022558 88-89 20.891949367587124 29.035461460568108 28.77966826946028 21.292920902384484 90-91 20.85619979373646 29.046552372482804 28.915769427360715 21.18147840642002 92-93 20.84049383094188 28.968490437659096 28.962713269792236 21.228302461606788 94-95 20.631185734166227 29.0610421217412 29.020891182986443 21.28688096110613 96-97 20.649900918398497 29.215999508395896 29.06045473526553 21.073644837940076 98-99 21.635444182567525 31.21498698844168 29.12255782572134 18.027011003269454 100 20.916412252035315 32.01759760921913 23.010280501089326 24.055709637656232 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1564.0 1 1427.5 2 2267.0 3 3388.5 4 4040.0 5 6157.0 6 8580.5 7 10504.5 8 11872.5 9 12011.5 10 11179.5 11 10086.5 12 10416.5 13 12878.5 14 19434.5 15 29549.0 16 38509.0 17 44172.0 18 47626.5 19 49985.5 20 51689.5 21 53484.0 22 57095.5 23 65327.0 24 79876.5 25 103260.0 26 136026.5 27 175743.5 28 224826.0 29 281636.0 30 335810.0 31 385707.5 32 432274.0 33 470805.5 34 502171.0 35 526198.0 36 544720.5 37 554199.5 38 547568.5 39 529473.0 40 509323.0 41 488172.5 42 464577.5 43 442611.0 44 422013.5 45 405132.5 46 389228.0 47 373977.0 48 360881.0 49 345377.0 50 330223.0 51 315875.5 52 299177.5 53 280276.0 54 262315.0 55 244992.0 56 226794.0 57 207031.5 58 185273.0 59 161443.0 60 136006.0 61 112398.0 62 91631.0 63 73593.5 64 57673.5 65 44746.5 66 34878.5 67 26729.0 68 20293.0 69 15468.0 70 11632.5 71 8509.5 72 6290.0 73 4572.0 74 3355.0 75 2457.0 76 1742.0 77 1241.0 78 892.5 79 660.5 80 500.0 81 377.5 82 294.5 83 208.5 84 146.5 85 106.0 86 80.0 87 64.5 88 45.0 89 29.5 90 21.5 91 15.5 92 9.5 93 6.0 94 3.5 95 2.5 96 3.0 97 3.0 98 1.5 99 0.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02059647757249557 3 1.9137888760752928 4 0.48199339515739203 5 1.7909980497822234E-5 6 1.0745988298693342E-4 7 0.0 8 0.0 9 0.020757667396975973 10-11 0.14862597316117782 12-13 0.004329737785348526 14-15 4.4774951244555585E-6 16-17 3.1342465871188915E-5 18-19 0.07453686133681169 20-21 0.018951726790258614 22-23 7.705037544587305E-4 24-25 1.1205638892639043E-4 26-27 0.0026696409907176807 28-29 0.0012308297148886282 30-31 8.100051840331778E-4 32-33 0.0020261393638220226 34-35 0.027300541644920136 36-37 4.551668400397161E-6 38-39 5.040529292234079E-5 40-41 0.0011359101748091877 42-43 1.0707129062569902E-4 44-45 5.686800808428084E-4 46-47 0.0014444561014585965 48-49 0.0036839610948732372 50-51 0.007289994880016246 52-53 0.0047508931213294265 54-55 0.0186505208519661 56-57 0.006713291032747824 58-59 0.007843577638015999 60-61 0.008696961201524021 62-63 0.0074600091155893515 64-65 0.020408157881477037 66-67 0.00314526502816189 68-69 0.0026166695312502546 70-71 0.0018026907060709496 72-73 5.990738542166653E-4 74-75 9.097815159689401E-5 76-77 4.6216882426330865E-5 78-79 0.0 80-81 0.0 82-83 2.436216947311753E-5 84-85 6.207833677733598E-5 86-87 6.334119080805308E-5 88-89 2.590966065664019E-5 90-91 4.653958567402517E-5 92-93 0.0022356114304966524 94-95 7.052680561669837E-5 96-97 1.2495902079171094E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1089.0 20-21 3114.0 22-23 5548.0 24-25 10396.0 26-27 12316.0 28-29 16628.0 30-31 29150.0 32-33 36899.0 34-35 51069.0 36-37 69072.0 38-39 82514.0 40-41 85629.0 42-43 97245.0 44-45 113497.0 46-47 115586.0 48-49 108950.0 50-51 104398.0 52-53 104682.0 54-55 115807.0 56-57 123546.0 58-59 126206.0 60-61 125874.0 62-63 120512.0 64-65 126212.0 66-67 136271.0 68-69 139541.0 70-71 141072.0 72-73 136563.0 74-75 139918.0 76-77 135513.0 78-79 150828.0 80-81 153404.0 82-83 154709.0 84-85 159177.0 86-87 167698.0 88-89 196246.0 90-91 203618.0 92-93 216908.0 94-95 256476.0 96-97 484721.0 98-99 826916.0 100-101 5581440.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.32960914316936 #Duplication Level Percentage of deduplicated Percentage of total 1 93.63252478233134 84.5778936667611 2 4.47284294494571 8.080603099514573 3 1.045063895775223 2.8320063970504137 4 0.3978790925433325 1.4376105166271254 5 0.1856163286179074 0.8383325207322831 6 0.08598667697199334 0.46602857534400727 7 0.054353856751818835 0.3436833845070929 8 0.030847107054799067 0.2229125698766002 9 0.02423821045961508 0.19704852694322192 >10 0.0696057932677603 0.9293014829661276 >50 9.157418092404394E-4 0.052220320630864646 >100 1.2556947130812037E-4 0.022358939046619085 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.954990248911119E-6 0.0 0.0 0.0 3 0.0 8.954990248911119E-6 0.0 0.0 0.0 4 0.0 3.5819960995644474E-5 0.0 8.954990248911119E-6 0.0 5 0.0 3.5819960995644474E-5 0.0 8.954990248911119E-6 0.0 6 7.163992199128895E-5 3.5819960995644474E-5 0.0 1.7909980497822237E-5 8.954990248911119E-6 7 7.163992199128895E-5 3.5819960995644474E-5 0.0 1.7909980497822237E-5 8.954990248911119E-6 8 7.163992199128895E-5 3.5819960995644474E-5 0.0 1.7909980497822237E-5 8.954990248911119E-6 9 7.163992199128895E-5 8.059491224020007E-5 0.0 4.477495124455559E-5 8.954990248911119E-6 10-11 8.059491224020007E-5 8.059491224020007E-5 0.0 7.163992199128895E-5 1.7909980497822237E-5 12-13 8.954990248911119E-5 8.059491224020007E-5 0.0 8.954990248911119E-5 1.7909980497822237E-5 14-15 9.850489273802229E-5 1.1193737811138898E-4 0.0 1.0745988298693341E-4 1.7909980497822237E-5 16-17 1.7014481472931125E-4 1.2536986348475566E-4 0.0 1.1641487323584453E-4 1.7909980497822237E-5 18-19 1.7014481472931125E-4 1.4775733910703346E-4 0.0 1.2536986348475566E-4 1.7909980497822237E-5 20-21 1.7014481472931125E-4 1.746223098537668E-4 0.0 1.2984735860921122E-4 1.7909980497822237E-5 22-23 1.7014481472931125E-4 2.1044227084941126E-4 0.0 1.7014481472931125E-4 2.6864970746733352E-5 24-25 1.7014481472931125E-4 2.283522513472335E-4 0.0 2.2387475622277794E-4 2.6864970746733352E-5 26-27 1.7014481472931125E-4 2.4178473672060018E-4 0.0 2.865596879651558E-4 2.6864970746733352E-5 28-29 1.7014481472931125E-4 2.4626223184505576E-4 0.0 6.716242686683338E-4 2.6864970746733352E-5 30-31 1.746223098537668E-4 3.402896294586225E-4 0.0 0.00400288064126327 2.6864970746733352E-5 32-33 1.8357730010267793E-4 3.402896294586225E-4 0.0 0.011493729984477419 2.6864970746733352E-5 34-35 1.8805479522713346E-4 4.4774951244555593E-4 0.0 0.019584563674368616 2.6864970746733352E-5 36-37 1.8805479522713346E-4 5.641643856814005E-4 0.0 0.031020086222228113 2.6864970746733352E-5 38-39 1.8805479522713346E-4 5.820743661792227E-4 0.0 0.04836590233436895 2.6864970746733352E-5 40-41 1.9253229035158902E-4 6.671467735438783E-4 0.0 0.06502218419734362 2.6864970746733352E-5 42-43 2.0148728060050014E-4 7.208767150373449E-4 0.0 0.07926509618823677 2.6864970746733352E-5 44-45 2.059647757249557E-4 8.372915882731895E-4 0.0 0.09560347589737508 2.6864970746733352E-5 46-47 2.059647757249557E-4 9.13409005388934E-4 0.0 0.11184335071377541 3.1342465871188915E-5 48-49 2.059647757249557E-4 9.268414907623007E-4 0.0 0.12503405135042148 3.5819960995644474E-5 50-51 2.1491976597386682E-4 9.984814127535898E-4 0.0 0.13695762086684665 4.477495124455559E-5 52-53 2.2387475622277794E-4 0.0010119138981269564 0.0 0.14986623931065202 4.925244636901115E-5 54-55 2.2387475622277794E-4 0.0010343013737492343 0.0 0.16252411802748787 5.3729941493466705E-5 56-57 2.2387475622277794E-4 0.001056688849371512 0.0 0.17291638421134925 6.268493174237783E-5 58-59 2.2387475622277794E-4 0.001056688849371512 0.0 0.18220270909947006 6.268493174237783E-5 60-61 2.3282974647168906E-4 0.0010925088103671565 0.0 0.19088904964091385 7.163992199128895E-5 62-63 2.3282974647168906E-4 0.0011193737811138898 0.0 0.20056043910973786 7.163992199128895E-5 64-65 2.3282974647168906E-4 0.00119996869335409 0.0 0.20940796947566204 7.163992199128895E-5 66-67 2.3282974647168906E-4 0.001208923683603001 0.0 0.2173734333020685 7.163992199128895E-5 68-69 2.3282974647168906E-4 0.0012357886543497344 0.0 0.22592992648490307 7.163992199128895E-5 70-71 2.3730724159614462E-4 0.0012536986348475566 0.0 0.23282079148144016 8.059491224020007E-5 72-73 2.552172220939669E-4 0.0012536986348475566 0.0 0.23887884238482854 8.059491224020007E-5 74-75 2.5969471721842244E-4 0.0013074285763410233 0.0 0.2440906467096948 8.507240736465563E-5 76-77 2.5969471721842244E-4 0.0013835459934567677 0.0 0.2488367915416177 8.954990248911119E-5 78-79 2.5969471721842244E-4 0.0014148884593279567 0.0 0.2514785136650465 8.954990248911119E-5 80-81 2.5969471721842244E-4 0.0014193659544524122 0.0 0.25217700290446154 9.85048927380223E-5 82-83 2.64172212342878E-4 0.0014238434495768679 0.0 0.2532023492879618 1.0745988298693341E-4 84-85 2.6864970746733356E-4 0.0014238434495768679 0.0 0.2536545762955319 1.0745988298693341E-4 86-87 2.6864970746733356E-4 0.0014238434495768679 0.0 0.25378890114926556 1.0745988298693341E-4 88 2.6864970746733356E-4 0.0014686184008214232 0.0 0.25379337864439 1.0745988298693341E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10175 0.0 43.566856 1 GTATCAA 17940 0.0 31.626606 1 TCAACGC 21445 0.0 25.377117 4 ATCAACG 21565 0.0 25.168934 3 CAACGCA 22100 0.0 24.714424 5 TATCAAC 23325 0.0 23.841394 2 AACGCAG 22585 0.0 23.769077 6 ACGCAGA 26330 0.0 20.403866 7 CGCAGAG 27120 0.0 19.749157 8 GTACATG 24060 0.0 19.535843 1 TACATGG 24870 0.0 18.160389 2 ACATGGG 24075 0.0 17.963013 3 AGAGTAC 28990 0.0 16.565975 10-11 GCAGAGT 31170 0.0 16.421736 9 GTGGTAT 5610 0.0 15.714293 1 CATGGGG 16760 0.0 15.599723 4 GAGTACT 19210 0.0 15.455396 12-13 CAGAGTA 32180 0.0 14.965423 9 AGTACTT 23035 0.0 13.677944 12-13 TATACTG 7070 0.0 13.599093 5 >>END_MODULE