##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140180_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8668631 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.041127139914018 31.0 18.0 33.0 18.0 33.0 2 26.830611084956782 29.0 18.0 32.0 18.0 33.0 3 29.721480589034186 32.0 27.0 33.0 25.0 33.0 4 30.739948095610483 32.0 31.0 33.0 27.0 33.0 5 31.503294464835335 33.0 32.0 33.0 28.0 33.0 6 35.237777683696535 37.0 35.0 38.0 29.0 38.0 7 35.753950075853965 38.0 36.0 38.0 31.0 38.0 8 36.198097369700015 38.0 37.0 38.0 33.0 38.0 9 36.343430006422004 38.0 37.0 38.0 33.0 38.0 10-11 36.49570122433404 38.0 38.0 38.0 34.0 38.0 12-13 36.514453377932455 38.0 38.0 38.0 34.0 38.0 14-15 36.52618095060224 38.0 38.0 38.0 34.0 38.0 16-17 36.51821527528395 38.0 38.0 38.0 34.0 38.0 18-19 36.53830887483848 38.0 38.0 38.0 34.0 38.0 20-21 36.532797829948414 38.0 38.0 38.0 34.0 38.0 22-23 36.523931675390784 38.0 38.0 38.0 34.0 38.0 24-25 36.50751060570059 38.0 38.0 38.0 34.0 38.0 26-27 36.44944870082084 38.0 38.0 38.0 34.0 38.0 28-29 36.42261193565781 38.0 38.0 38.0 34.0 38.0 30-31 36.417292460220466 38.0 38.0 38.0 34.0 38.0 32-33 36.369033107417714 38.0 38.0 38.0 33.5 38.0 34-35 36.29962756046995 38.0 37.5 38.0 33.0 38.0 36-37 36.28399651070977 38.0 37.0 38.0 33.0 38.0 38-39 36.220142322021395 38.0 37.0 38.0 33.0 38.0 40-41 36.32251905837039 38.0 37.0 38.0 33.0 38.0 42-43 36.29586838703959 38.0 37.0 38.0 33.0 38.0 44-45 36.24381887186648 38.0 37.0 38.0 33.0 38.0 46-47 36.20132201004128 38.0 37.0 38.0 33.0 38.0 48-49 36.15489861759017 38.0 37.0 38.0 33.0 38.0 50-51 36.12643745616717 38.0 37.0 38.0 33.0 38.0 52-53 36.10134195100214 38.0 37.0 38.0 33.0 38.0 54-55 36.057006995534536 38.0 37.0 38.0 32.5 38.0 56-57 36.05325298250176 38.0 37.0 38.0 32.0 38.0 58-59 36.01380368629671 38.0 37.0 38.0 31.0 38.0 60-61 35.998319929354864 38.0 37.0 38.0 31.0 38.0 62-63 35.99126976245983 38.0 37.0 38.0 31.0 38.0 64-65 35.97568375402021 38.0 37.0 38.0 31.0 38.0 66-67 35.96228176726906 38.0 37.0 38.0 31.0 38.0 68-69 35.93126211483212 38.0 37.0 38.0 31.0 38.0 70-71 35.90061783147429 38.0 37.0 38.0 31.0 38.0 72-73 35.860115111882806 38.0 37.0 38.0 31.0 38.0 74-75 35.8841290277079 38.0 37.0 38.0 31.0 38.0 76-77 35.86528162188668 38.0 37.0 38.0 31.0 38.0 78-79 35.85659672104565 38.0 37.0 38.0 31.0 38.0 80-81 35.81827630328952 38.0 37.0 38.0 31.0 38.0 82-83 35.822729025780916 38.0 37.0 38.0 31.0 38.0 84-85 35.82384192928521 38.0 37.0 38.0 31.0 38.0 86-87 35.82356712719238 38.0 37.0 38.0 31.0 38.0 88-89 35.800537708793996 38.0 37.0 38.0 31.0 38.0 90-91 35.78828675126139 38.0 37.0 38.0 31.0 38.0 92-93 35.741495976831416 38.0 37.0 38.0 31.0 38.0 94-95 35.73889112315908 38.0 36.5 38.0 31.0 38.0 96-97 35.779671382660766 38.0 37.0 38.0 31.0 38.0 98-99 35.820915244985784 38.0 37.0 38.0 31.0 38.0 100-101 35.317628540727895 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 30.0 18 263.0 19 606.0 20 854.0 21 1475.0 22 3461.0 23 8581.0 24 18589.0 25 33895.0 26 55412.0 27 82674.0 28 114274.0 29 152971.0 30 194431.0 31 242920.0 32 304876.0 33 392397.0 34 536920.0 35 830444.0 36 1777092.0 37 3916466.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.498119599276976 24.603054392325614 13.720447900020199 26.178378108377203 2 12.869875300955828 24.428989998536103 39.068118137685175 23.633016562822895 3 18.919549352707875 26.40005906497378 30.545670375916256 24.13472120640209 4 13.309148814847466 18.972199877927668 37.20327927212498 30.51537203509989 5 13.54284895167171 38.862393393815545 34.157675241327524 13.437082413185223 6 29.353181603877243 38.461782489068916 18.19197287322531 13.993063033828527 7 25.501593042776882 32.787276330022586 22.560055907328387 19.151074719872145 8 23.648024699632504 37.4810509294951 21.34375081832414 17.527173552548263 9 24.43263532615473 16.723344205099973 20.82485688916739 38.019163579577906 10-11 23.878557063970078 26.998986345133392 28.78972469816745 20.332731892729083 12-13 24.85855032934266 24.107566696517594 28.707220321178745 22.326662652961005 14-15 21.90505052066468 25.61023764882829 25.85550705757345 26.62920477293358 16-17 21.838119536983406 29.057858155457307 26.464767043377435 22.639255264181855 18-19 22.012155091155687 27.753038513232365 28.206841426287493 22.027964969324454 20-21 22.62030845243282 26.841913181945266 28.112117976857615 22.4256603887643 22-23 22.117560147811023 27.600496041583778 27.971056203182066 22.310887607423133 24-25 22.448697006339994 27.77130092473384 28.14118061373489 21.638821455191277 26-27 22.502755924118787 27.795405548595813 28.035038077427632 21.666800449857764 28-29 22.104396495828794 27.61016355146932 28.12671298325109 22.1587269694508 30-31 23.154634682182724 27.363008239629 28.093925445381174 21.388431632807105 32-33 21.566672315732003 28.11024965602642 28.343063428026394 21.980014600215185 34-35 22.140502748926348 27.771522298334006 28.655501838339042 21.432473114400604 36-37 21.87074655091057 27.684755866532424 28.462166843186175 21.982330739370834 38-39 21.768841598569352 26.97072438892073 28.919663331356137 22.340770681153778 40-41 22.009932898703465 26.79866601214343 29.104465340139065 22.086935749014046 42-43 22.388420609870995 26.641129395785363 28.80872047289198 22.16172952145166 44-45 21.744775005975214 27.20294125457798 28.701633949846816 22.350649789599984 46-47 22.493163659900254 26.52746230922513 28.220498492771327 22.758875538103283 48-49 22.233426600343915 26.699730797445557 28.190872544570688 22.87597005763984 50-51 21.832436669723478 26.77439008751436 28.738117859063767 22.655055383698393 52-53 22.041792527341627 26.855087522138977 29.19224214439666 21.910877806122738 54-55 22.01242053435914 26.937265132463413 28.504893376870427 22.545420956307023 56-57 22.54189958371188 27.696373438601007 27.554176706469097 22.207550271218015 58-59 21.61997379053292 28.55163428389713 28.419544950445275 21.408846975124675 60-61 22.22916670320802 29.302500617305245 27.060310251346685 21.40802242814005 62-63 21.598168763864425 29.89712551728917 27.126405767312427 21.37829995153398 64-65 21.604704075725024 29.651032078146695 27.210025907682727 21.534237938445553 66-67 21.791510429809335 29.372578537647918 27.10466855888574 21.731242473657 68-69 21.930345293048322 28.70793449826836 27.421255219956613 21.9404649887267 70-71 22.097853806392084 27.905933946327266 27.72097463890671 22.275237608373942 72-73 22.244111086899224 27.554913371197642 27.826438329180046 22.37453721272308 74-75 22.12684713250547 27.61811544751692 27.837532637602187 22.41750478237542 76-77 22.241172801447977 27.672215552022152 27.719382880300557 22.367228766229317 78-79 22.166162621119465 27.656306668673857 27.7547440849523 22.422786625254375 80-81 22.233911835213277 27.634839956236096 27.758599749707745 22.372648458842882 82-83 22.37365759068904 27.515394621008948 27.900698372840367 22.21024941546165 84-85 22.39426555194515 27.537824724358316 27.76725996388254 22.30064975981399 86-87 22.179695851354875 27.707235837932824 27.784521685881085 22.328546624831212 88-89 22.39028745561561 27.548351495416508 27.666164400680586 22.395196648287296 90-91 22.36494441056346 27.587266595372007 27.755757090758916 22.29203190330562 92-93 22.459031837210333 27.553365485094716 27.75197597167774 22.235626706017214 94-95 22.13954478995453 27.74918789817728 27.77675714023723 22.33451017163096 96-97 22.20979792571569 27.695072394898425 27.83893457362928 22.2561951057566 98-99 22.502986082445737 28.286938821965556 27.808021586101678 21.402053509487033 100-101 23.13056459765715 30.80788660494969 25.176105892251645 20.88544290514152 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2224.0 1 2177.0 2 2556.0 3 3284.0 4 4044.5 5 5266.5 6 6724.5 7 9647.5 8 12227.0 9 12538.0 10 11809.0 11 11053.0 12 11785.5 13 14723.5 14 21557.0 15 30282.5 16 35772.0 17 36824.0 18 35325.5 19 32604.0 20 30017.0 21 28976.0 22 30405.5 23 35298.5 24 43752.5 25 56446.5 26 73328.0 27 91387.0 28 109497.5 29 128592.5 30 146184.5 31 163669.5 32 183070.5 33 203024.0 34 222313.0 35 240480.5 36 262036.0 37 280569.5 38 292294.5 39 301700.0 40 312064.0 41 322726.0 42 330238.0 43 346179.5 44 406914.0 45 449547.0 46 427954.0 47 402416.5 48 380294.0 49 363176.0 50 350993.0 51 340477.0 52 324316.0 53 302811.0 54 285964.5 55 267035.5 56 247248.0 57 225395.0 58 201612.0 59 176381.5 60 149555.5 61 124320.0 62 100040.5 63 80150.0 64 64483.5 65 50693.5 66 38452.0 67 26863.0 68 18597.5 69 14014.5 70 10288.0 71 6956.0 72 4749.5 73 3119.5 74 1953.5 75 1158.0 76 713.5 77 455.0 78 280.5 79 184.0 80 133.0 81 90.0 82 65.5 83 50.0 84 32.5 85 19.5 86 13.0 87 7.5 88 2.5 89 1.0 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0024340636947171933 4 0.0 5 0.04920038700459162 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.92544089587491E-4 28-29 2.713629469600335E-4 30-31 0.0 32-33 0.0 34-35 8.72766626567889E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 7.315011140457174E-5 48-49 0.0 50-51 1.863024710041939E-5 52-53 0.0 54-55 0.001067012286046674 56-57 0.0020514542963377975 58-59 0.008624684412764146 60-61 0.007807871282629935 62-63 0.004009146102404615 64-65 0.004961970937311666 66-67 0.00685152733533939 68-69 0.003763098833890933 70-71 0.0057230782084398 72-73 9.824447721145137E-4 74-75 0.0016487601323804497 76-77 0.0012474921261974572 78-79 0.0011809726067571898 80-81 9.586341969890038E-5 82-83 0.0 84-85 0.0 86-87 2.746035220952859E-4 88-89 9.185354746890988E-4 90-91 0.0 92-93 0.0 94-95 1.0424658905160623E-4 96-97 3.3361593043733546E-4 98-99 8.412091540380143E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 268.0 20-21 719.0 22-23 1056.0 24-25 1366.0 26-27 3527.0 28-29 8269.0 30-31 22960.0 32-33 28592.0 34-35 38028.0 36-37 58362.0 38-39 67087.0 40-41 63983.0 42-43 70230.0 44-45 81231.0 46-47 80142.0 48-49 74292.0 50-51 67151.0 52-53 64897.0 54-55 70067.0 56-57 73629.0 58-59 75205.0 60-61 77236.0 62-63 79960.0 64-65 108318.0 66-67 119734.0 68-69 104368.0 70-71 136188.0 72-73 69193.0 74-75 70446.0 76-77 74057.0 78-79 77677.0 80-81 78399.0 82-83 73971.0 84-85 74260.0 86-87 76331.0 88-89 79644.0 90-91 81870.0 92-93 80285.0 94-95 84927.0 96-97 132081.0 98-99 691020.0 100-101 5347605.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.61831306438916 #Duplication Level Percentage of deduplicated Percentage of total 1 90.29294997859898 76.40437108796318 2 6.706670155064463 11.350142296016802 3 1.6038159831895593 4.0713660888961565 4 0.5721626049070436 1.9366173770304245 5 0.29143530202964807 1.2330381812579783 6 0.1522040935541735 0.7727552182829177 7 0.08096006503103767 0.47954928899567545 8 0.06340940377771197 0.4292477424070953 9 0.046076324523263955 0.35090107680293464 >10 0.1842355321009944 2.5153143230338872 >50 0.004966893661183867 0.28112647977606725 >100 0.001088604680552091 0.15245804062754753 >500 0.0 0.0 >1k 2.505888134766407E-5 0.023112798909428214 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1535846894394283E-5 0.0 2 1.1535846894394283E-5 5.767923447197141E-5 0.0 1.1535846894394283E-5 0.0 3 1.1535846894394283E-5 5.767923447197141E-5 0.0 1.1535846894394283E-5 0.0 4 1.1535846894394283E-5 1.1535846894394282E-4 0.0 1.1535846894394283E-5 0.0 5 1.1535846894394283E-5 1.1535846894394282E-4 0.0 1.1535846894394283E-5 0.0 6 4.614338757757713E-5 1.1535846894394282E-4 0.0 1.1535846894394283E-5 0.0 7 4.614338757757713E-5 1.1535846894394282E-4 0.0 1.1535846894394283E-5 0.0 8 4.614338757757713E-5 1.3843016273273138E-4 0.0 1.1535846894394283E-5 0.0 9 5.767923447197141E-5 2.3071693788788563E-4 0.0 1.1535846894394283E-5 0.0 10-11 5.767923447197141E-5 2.3071693788788563E-4 0.0 2.3071693788788565E-5 1.1535846894394283E-5 12-13 8.075092826075998E-5 2.3071693788788563E-4 0.0 4.037546413037999E-5 1.1535846894394283E-5 14-15 8.651885170795712E-5 3.345395599374342E-4 0.0 4.614338757757713E-5 2.3071693788788565E-5 16-17 1.2112639239113996E-4 3.518433302790256E-4 0.0 5.767923447197141E-5 2.3071693788788565E-5 18-19 1.3266223928553423E-4 3.9798671785660274E-4 0.0 5.767923447197141E-5 3.4607540683182846E-5 20-21 1.3843016273273138E-4 4.6143387577577126E-4 0.0 5.767923447197141E-5 3.4607540683182846E-5 22-23 1.3843016273273138E-4 4.960414164589541E-4 0.0 6.921508136636569E-5 4.6143387577577124E-5 24-25 1.672697799687171E-4 5.479527274837284E-4 0.0 8.651885170795712E-5 5.767923447197141E-5 26-27 1.9034147375750568E-4 5.652564978253198E-4 0.0 1.672697799687171E-4 6.921508136636569E-5 28-29 1.961093972047028E-4 5.767923447197142E-4 0.0 4.960414164589541E-4 7.498300481356283E-5 30-31 2.1341316754629422E-4 6.113998854028969E-4 0.0 0.002007237359624605 8.075092826075998E-5 32-33 2.1918109099349135E-4 6.113998854028969E-4 0.0 0.0052603461838437926 8.075092826075998E-5 34-35 2.4802070822947707E-4 7.152225074524455E-4 0.0 0.00952284161132248 8.075092826075998E-5 36-37 2.653244785710685E-4 8.132772060547969E-4 0.0 0.01568875177637622 8.075092826075998E-5 38-39 2.7686032546546277E-4 8.59420593632374E-4 0.0 0.024282957712699962 8.075092826075998E-5 40-41 2.88396172359857E-4 9.747790625763168E-4 0.0 0.0334885635344266 8.075092826075998E-5 42-43 2.9993201925425134E-4 9.978507563651053E-4 0.0 0.04208853739419754 8.075092826075998E-5 44-45 3.0569994270144847E-4 0.001147816765992231 0.0 0.051346054526948945 8.075092826075998E-5 46-47 3.114678661486456E-4 0.0012747110818305683 0.0 0.06223012607180996 8.075092826075998E-5 48-49 3.172357895958427E-4 0.0013150865459609481 0.0 0.07286040898499428 9.228677515515426E-5 50-51 3.230037130430399E-4 0.0015400355604016365 0.0 0.08276970146727897 9.228677515515426E-5 52-53 3.460754068318285E-4 0.0015458034838488337 0.0 0.09297315804537072 9.228677515515426E-5 54-55 3.460754068318285E-4 0.0015458034838488337 0.0 0.1028939863745498 9.80546986023514E-5 56-57 3.518433302790256E-4 0.0015688751776376225 0.0 0.11076143395652671 1.0382262204954855E-4 58-59 3.5761125372622273E-4 0.0015746431010848195 0.0 0.11735993838012022 1.0382262204954855E-4 60-61 3.6337917717341986E-4 0.001597714794873608 0.0 0.12329513160728608 1.0382262204954855E-4 62-63 3.922187944094056E-4 0.001638090259003988 0.0 0.12920725314066317 1.0382262204954855E-4 64-65 3.922187944094056E-4 0.0018226638093142965 0.0 0.13469254833894764 1.0382262204954855E-4 66-67 3.922187944094056E-4 0.0018341996562086908 0.0 0.14050661517372237 1.0382262204954855E-4 68-69 4.0375464130379987E-4 0.0018688071968918736 0.0 0.1460438216830316 1.0382262204954855E-4 70-71 4.0375464130379987E-4 0.0019034147375750566 0.0 0.15167331496749603 1.0382262204954855E-4 72-73 4.0375464130379987E-4 0.001932254354811042 0.0 0.15629342164870091 1.1535846894394282E-4 74-75 4.0375464130379987E-4 0.002007237359624605 0.0 0.15993298134388234 1.1535846894394282E-4 76-77 4.0375464130379987E-4 0.002093756211332562 0.0 0.16315148262741835 1.1535846894394282E-4 78-79 4.0375464130379987E-4 0.0021456675223573366 0.0 0.1662027141309856 1.1535846894394282E-4 80-81 4.0375464130379987E-4 0.0021456675223573366 0.0 0.1672467082749283 1.1535846894394282E-4 82-83 4.0375464130379987E-4 0.0021514354458045336 0.0 0.16771967799759846 1.268943158383371E-4 84-85 4.0375464130379987E-4 0.0021572033692517307 0.0 0.1682676307250822 1.268943158383371E-4 86-87 4.09522564750997E-4 0.002174507139593322 0.0 0.16838875711747334 1.268943158383371E-4 88-89 4.2682633509258844E-4 0.0023417769195620396 0.0 0.16840029296436773 1.268943158383371E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 14125 0.0 56.799423 1 GGTATCA 9225 0.0 46.502514 1 TATACAC 19130 0.0 44.38648 3 TTATACA 18820 0.0 43.32455 2 GTATCAA 16575 0.0 34.89039 1 TACACAT 27470 0.0 30.987167 5 ACACATC 29890 0.0 27.671286 6 ATACACA 31760 0.0 27.611712 4 TCAACGC 22150 0.0 27.270218 4 ATCAACG 22320 0.0 27.043774 3 ACATCTC 30890 0.0 27.007484 8 TATCAAC 22715 0.0 26.424942 2 CAACGCA 22905 0.0 26.38975 5 CACATCT 32470 0.0 25.51153 7 AACGCAG 23780 0.0 25.474236 6 CATCTCC 34330 0.0 24.092476 9 ACGCAGA 28485 0.0 21.20734 7 CGCAGAG 30165 0.0 20.068151 8 ATCTCCG 27970 0.0 19.141127 7 TCTCCGA 28925 0.0 18.494581 8 >>END_MODULE