##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140179_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9463430 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.438727712890568 31.0 18.0 33.0 18.0 33.0 2 27.227716800356742 30.0 18.0 32.0 18.0 33.0 3 29.938373824289926 32.0 28.0 33.0 25.0 33.0 4 30.883315668843114 33.0 32.0 33.0 27.0 33.0 5 31.58695948509156 33.0 32.0 33.0 28.0 33.0 6 35.29719224424971 37.0 35.0 38.0 29.0 38.0 7 35.78556664972425 38.0 36.0 38.0 31.0 38.0 8 36.21679676396402 38.0 37.0 38.0 33.0 38.0 9 36.362973255997034 38.0 37.0 38.0 33.0 38.0 10-11 36.50466506330157 38.0 38.0 38.0 34.0 38.0 12-13 36.5262232615447 38.0 38.0 38.0 34.0 38.0 14-15 36.536900679774675 38.0 38.0 38.0 34.0 38.0 16-17 36.53108228200557 38.0 38.0 38.0 34.0 38.0 18-19 36.544491003790384 38.0 38.0 38.0 34.0 38.0 20-21 36.54090606842062 38.0 38.0 38.0 34.0 38.0 22-23 36.53089446885248 38.0 38.0 38.0 34.0 38.0 24-25 36.51942488983848 38.0 38.0 38.0 34.0 38.0 26-27 36.45935548130144 38.0 38.0 38.0 34.0 38.0 28-29 36.424142296364835 38.0 38.0 38.0 34.0 38.0 30-31 36.42160953519756 38.0 38.0 38.0 34.0 38.0 32-33 36.38570665552392 38.0 38.0 38.0 33.5 38.0 34-35 36.32426515117869 38.0 38.0 38.0 33.0 38.0 36-37 36.302755297684094 38.0 37.5 38.0 33.0 38.0 38-39 36.23764640273364 38.0 37.0 38.0 33.0 38.0 40-41 36.33125638389298 38.0 37.5 38.0 33.0 38.0 42-43 36.30134822784023 38.0 37.0 38.0 33.0 38.0 44-45 36.24436043012848 38.0 37.0 38.0 33.0 38.0 46-47 36.199989505388004 38.0 37.0 38.0 33.0 38.0 48-49 36.15197163823413 38.0 37.0 38.0 33.0 38.0 50-51 36.119610786582626 38.0 37.0 38.0 33.0 38.0 52-53 36.09586111736647 38.0 37.0 38.0 33.0 38.0 54-55 36.05060088176617 38.0 37.0 38.0 32.0 38.0 56-57 36.044074086601825 38.0 37.0 38.0 32.0 38.0 58-59 36.009877069510424 38.0 37.0 38.0 31.0 38.0 60-61 35.99167310174872 38.0 37.0 38.0 31.0 38.0 62-63 35.983336258693726 38.0 37.0 38.0 31.0 38.0 64-65 35.96447292698282 38.0 37.0 38.0 31.0 38.0 66-67 35.9574798215167 38.0 37.0 38.0 31.0 38.0 68-69 35.930372215355526 38.0 37.0 38.0 31.0 38.0 70-71 35.8952525758959 38.0 37.0 38.0 31.0 38.0 72-73 35.86205447715984 38.0 37.0 38.0 31.0 38.0 74-75 35.88596974776026 38.0 37.0 38.0 31.0 38.0 76-77 35.87100220874125 38.0 37.0 38.0 31.0 38.0 78-79 35.86191943937412 38.0 37.0 38.0 31.0 38.0 80-81 35.822788202822565 38.0 37.0 38.0 31.0 38.0 82-83 35.83060933108956 38.0 37.0 38.0 31.0 38.0 84-85 35.83366961286737 38.0 37.0 38.0 31.0 38.0 86-87 35.83341510550995 38.0 37.0 38.0 31.0 38.0 88-89 35.810480274149526 38.0 37.0 38.0 31.0 38.0 90-91 35.79846765194125 38.0 37.0 38.0 31.0 38.0 92-93 35.75358674306155 38.0 37.0 38.0 31.0 38.0 94-95 35.74991790055704 38.0 37.0 38.0 31.0 38.0 96-97 35.78731573811966 38.0 37.0 38.0 31.0 38.0 98-99 35.82941832881871 38.0 37.0 38.0 31.0 38.0 100-101 35.307696195453445 38.0 35.5 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 20.0 18 146.0 19 410.0 20 691.0 21 1252.0 22 3374.0 23 9156.0 24 19821.0 25 37247.0 26 60493.0 27 90508.0 28 127219.0 29 168399.0 30 213560.0 31 266450.0 32 332319.0 33 426982.0 34 579618.0 35 889819.0 36 1879407.0 37 4356539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.49089178025304 23.84055252693791 14.138858743605647 25.529696949203405 2 12.999462140048587 24.149246097873604 39.33413149354938 23.517160268528432 3 18.89822481843089 26.637223493403557 30.648318682018903 23.81623300614665 4 13.16512089168515 18.9559071076766 37.41465832155994 30.464313679078302 5 13.45722438113064 38.9617286275203 33.95110406342663 13.629942927922437 6 29.01398330203742 38.46262930036995 18.365043118615553 14.158344278977072 7 25.464139323691303 33.17553994693256 22.377182480348033 18.9831382490281 8 24.093853919773274 36.942292593700174 21.278976016095644 17.684877470430912 9 24.837548330784927 16.911363004745635 20.71979187250289 37.531296791966554 10-11 23.922335770434184 27.071859780227676 28.529275326176663 20.476529123161473 12-13 24.905240488913638 24.291895221922708 28.5799123573588 22.22295193180485 14-15 22.057404133596382 25.742790933097197 26.008857253659613 26.190947679646808 16-17 21.733488809025904 29.11501432355922 26.65187992091662 22.499616946498257 18-19 21.86764735407775 27.69472062455156 28.594045710698975 21.84358631067171 20-21 22.668070866659704 26.722217528522417 28.454150487272084 22.155561117545794 22-23 22.13090983953321 27.33427835599031 28.353950616383685 22.1808611880928 24-25 22.111009441659252 27.49264528916409 28.588397583623536 21.80794768555312 26-27 22.017151446579764 27.600717385324174 28.709262512747397 21.672868655348662 28-29 21.378289105372225 27.041463115228588 29.120111440065504 22.46013633933369 30-31 22.132968777607022 26.807641772730605 29.383317592694986 21.676071856967383 32-33 21.62729343759452 27.622318663316868 28.86672390108978 21.88366399799883 34-35 21.563379139860793 27.57216059128461 29.493490184281278 21.37097008457332 36-37 22.158933358476496 27.089214654749377 28.85167177030007 21.90018021647406 38-39 21.710265055851092 26.907681017763007 29.177669536015326 22.20438439037057 40-41 21.839147227372894 26.77400620343049 29.352305640239756 22.034540928956865 42-43 22.187242605231972 26.62183374282584 29.215123036343808 21.975800615598377 44-45 21.724096872576904 27.18206250773924 28.975381268703515 22.118459350980338 46-47 22.396382799008233 26.62120436996646 28.315809970044686 22.66660286098062 48-49 22.093889552743462 26.67144822651448 28.485261920273985 22.74940030046807 50-51 21.746646574339522 26.951833120929386 28.82055289154679 22.480967413184302 52-53 21.937095624662003 27.200780923746056 29.03671476977367 21.825408681818274 54-55 21.894338264087654 27.31961256540802 28.385271478659096 22.400777691845224 56-57 22.33339321912394 27.956826807662722 27.676057354958246 22.033722618255094 58-59 21.513035236946923 28.671152971856017 28.382696206109483 21.433115585087574 60-61 22.037934733182652 29.238250412611528 27.29821280400726 21.425602050198563 62-63 21.53730566486775 29.659894978295533 27.297636179598545 21.505163177238174 64-65 21.525348667097255 29.45198856600913 27.380915945925217 21.641746820968397 66-67 21.730032484526806 29.133094605081816 27.371059615033083 21.765813295358296 68-69 21.838846251904613 28.582188391453688 27.676713598577084 21.902251758064615 70-71 21.946239161357745 27.87121058727705 27.963614140510522 22.21893611085468 72-73 22.167074114152445 27.549958164817046 28.029831181363246 22.253136539667263 74-75 22.009706361445065 27.688338479142576 27.995911818921314 22.306043340491044 76-77 22.132162614127214 27.675258790370417 27.902588137860324 22.28999045764204 78-79 22.11629828341205 27.664785574873257 27.84505298197393 22.37386315974077 80-81 22.167739639595222 27.65576228854546 27.844222501627385 22.332275570231932 82-83 22.200758501550723 27.629963090224457 27.935802345811585 22.233476062413235 84-85 22.331052411526315 27.602389655405563 27.81484793164686 22.251710001421266 86-87 22.130344889715218 27.681027028841328 27.87698558767436 22.311642493769092 88-89 22.21758367497505 27.591652931090316 27.855988925484137 22.334774468450497 90-91 22.233821750540912 27.633634967944428 27.906379603128812 22.226163678385852 92-93 22.32405591841787 27.597024214381022 27.84566543321405 22.23325443398706 94-95 22.121145225942378 27.715167117822904 27.85673898445497 22.306948671779747 96-97 22.18115162613134 27.72832474374343 27.89723816762992 22.193285462495314 98-99 22.38561544579965 28.271041718749796 27.968742197148966 21.374600638301587 100-101 23.032130140980552 30.79377081540105 25.21371719700297 20.960381846615427 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3521.0 1 3412.5 2 3513.0 3 4058.0 4 4999.0 5 6658.5 6 8510.0 7 11685.5 8 14371.0 9 14692.0 10 14006.0 11 13316.0 12 14576.5 13 18784.0 14 28046.0 15 39536.5 16 46642.0 17 47897.5 18 45241.5 19 40576.0 20 35722.0 21 32073.0 22 31443.0 23 35310.0 24 43757.0 25 56991.0 26 74545.0 27 93611.0 28 112991.5 29 134248.5 30 154126.5 31 174431.0 32 198013.0 33 222801.5 34 246177.5 35 268157.5 36 292063.5 37 312636.0 38 327255.0 39 339065.0 40 351403.5 41 363329.5 42 373514.5 43 390783.0 44 445711.5 45 484315.5 46 470422.5 47 450486.0 48 420202.5 49 394939.0 50 383341.0 51 369811.5 52 353053.0 53 334540.5 54 314530.5 55 291699.0 56 266735.5 57 240119.5 58 213649.0 59 186623.0 60 158012.0 61 127980.0 62 99236.0 63 75907.0 64 57236.0 65 42407.0 66 31424.5 67 23604.5 68 17776.0 69 13139.5 70 9665.5 71 6950.0 72 4952.0 73 3452.0 74 2322.0 75 1564.0 76 1054.5 77 682.5 78 460.5 79 314.5 80 195.0 81 114.5 82 78.5 83 56.5 84 40.5 85 28.0 86 20.5 87 18.0 88 14.5 89 7.5 90 3.5 91 1.5 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0024198414317007683 4 0.0 5 0.049548630887532315 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.510526278787185E-4 28-29 2.2742387038828023E-4 30-31 0.0 32-33 0.0 34-35 7.462048156327777E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.532970278266908E-6 46-47 1.1739934292146812E-4 48-49 0.0 50-51 1.709564678159918E-5 52-53 1.1491607162167147E-5 54-55 0.0010602248255988098 56-57 0.0020870921941699623 58-59 0.008598546662666209 60-61 0.007860353367612745 62-63 0.004081706232789534 64-65 0.0050173305180195625 66-67 0.00633385287405217 68-69 0.0035443594780971443 70-71 0.005724688874634541 72-73 0.0010020689815235936 74-75 0.001599572541985841 76-77 0.0014313002274250316 78-79 0.001206924868126788 80-81 8.768407078559667E-5 82-83 0.0 84-85 0.0 86-87 2.721445408502912E-4 88-89 0.001038013245472691 90-91 0.0 92-93 0.0 94-95 1.7607497624638524E-4 96-97 3.5731414993065504E-4 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 240.0 20-21 713.0 22-23 1225.0 24-25 1746.0 26-27 3881.0 28-29 9254.0 30-31 24706.0 32-33 31403.0 34-35 42040.0 36-37 64083.0 38-39 73643.0 40-41 71219.0 42-43 79931.0 44-45 92188.0 46-47 90811.0 48-49 83357.0 50-51 73738.0 52-53 70307.0 54-55 76476.0 56-57 79809.0 58-59 83834.0 60-61 91509.0 62-63 91668.0 64-65 109899.0 66-67 120101.0 68-69 107733.0 70-71 134707.0 72-73 76251.0 74-75 76563.0 76-77 80913.0 78-79 84880.0 80-81 86112.0 82-83 81431.0 84-85 81145.0 86-87 83469.0 88-89 87435.0 90-91 89875.0 92-93 87545.0 94-95 92996.0 96-97 143927.0 98-99 750611.0 100-101 5850056.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.51233303790646 #Duplication Level Percentage of deduplicated Percentage of total 1 89.81203782869399 76.80036889620332 2 7.187528109072574 12.29244594764656 3 1.7077922417054914 4.381118967968184 4 0.6149699711503082 2.103500679252675 5 0.27867532124723393 1.191508843996952 6 0.1465555540874214 0.7519384409807094 7 0.08182533784138071 0.489795287830195 8 0.04433036499688792 0.30326343482446644 9 0.031453331848960014 0.24206830093980525 >10 0.09243388178430297 1.2026411770698224 >50 0.0018439769982333102 0.10712805829051922 >100 5.152170993479537E-4 0.08041763568202673 >500 0.0 0.0 >1k 3.8863473858806845E-5 0.05380432931471526 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0566993151531738E-5 0.0 1.0566993151531738E-5 0.0 3 0.0 1.0566993151531738E-5 0.0 2.1133986303063475E-5 0.0 4 0.0 1.0566993151531738E-5 0.0 5.2834965757658695E-5 0.0 5 0.0 1.0566993151531738E-5 0.0 5.2834965757658695E-5 0.0 6 0.0 1.0566993151531738E-5 0.0 5.2834965757658695E-5 1.0566993151531738E-5 7 0.0 3.170097945459521E-5 0.0 5.2834965757658695E-5 1.0566993151531738E-5 8 0.0 3.170097945459521E-5 0.0 5.2834965757658695E-5 1.0566993151531738E-5 9 0.0 6.340195890919043E-5 0.0 7.396895206072216E-5 1.0566993151531738E-5 10-11 0.0 6.340195890919043E-5 0.0 8.45359452122539E-5 1.0566993151531738E-5 12-13 0.0 6.340195890919043E-5 0.0 1.0566993151531739E-4 2.1133986303063475E-5 14-15 0.0 8.45359452122539E-5 0.0 1.1095342809108326E-4 4.226797260612695E-5 16-17 0.0 8.45359452122539E-5 0.0 1.1623692466684913E-4 5.2834965757658695E-5 18-19 0.0 9.510293836378564E-5 0.0 1.1623692466684913E-4 6.340195890919043E-5 20-21 0.0 1.1095342809108326E-4 0.0 1.1623692466684913E-4 6.340195890919043E-5 22-23 0.0 1.2680391781838085E-4 0.0 1.2680391781838085E-4 8.45359452122539E-5 24-25 0.0 1.3208741439414673E-4 0.0 1.532214006972102E-4 1.0566993151531739E-4 26-27 0.0 1.373709109699126E-4 0.0 3.117262979701863E-4 1.21520421242615E-4 28-29 0.0 1.373709109699126E-4 0.0 6.815710582737972E-4 1.3208741439414673E-4 30-31 0.0 1.373709109699126E-4 0.0 0.0019654607261849035 1.373709109699126E-4 32-33 0.0 1.4265440754567845E-4 0.0 0.004654760483249731 1.690718904245078E-4 34-35 0.0 1.5850489727297607E-4 0.0 0.008067899271194483 1.902058767275713E-4 36-37 0.0 1.690718904245078E-4 0.0 0.012928716120899082 1.9548937330333716E-4 38-39 0.0 1.7963888357603957E-4 0.0 0.020050869505031474 2.0077286987910304E-4 40-41 0.0 2.6417482878829347E-4 0.0 0.02778062499537694 2.1133986303063478E-4 42-43 0.0 2.8530881509135694E-4 0.0 0.0346597375370241 2.1133986303063478E-4 44-45 0.0 3.328602842732498E-4 0.0 0.04265366785615786 2.1662335960640064E-4 46-47 0.0 3.5927776715207914E-4 0.0 0.051255200281504695 2.2190685618216652E-4 48-49 0.0 3.5927776715207914E-4 0.0 0.059233280110911155 2.4304084248523E-4 50-51 0.0 4.015457397582061E-4 0.0 0.06724834441634799 2.4304084248523E-4 52-53 0.0 4.015457397582061E-4 0.0 0.07479317752654165 2.7474182193982523E-4 54-55 5.283496575765869E-6 4.1211273290973785E-4 0.0 0.08268672141073585 3.117262979701863E-4 56-57 1.0566993151531738E-5 4.2267972606126956E-4 0.0 0.09090255858605178 3.2757678769748384E-4 58-59 1.0566993151531738E-5 4.2267972606126956E-4 0.0 0.09832587127500282 3.381437808490156E-4 60-61 1.0566993151531738E-5 4.2267972606126956E-4 0.0 0.10524196829268034 3.5927776715207914E-4 62-63 1.0566993151531738E-5 4.3324671921280127E-4 0.0 0.11163499914935705 3.6984476030361085E-4 64-65 1.0566993151531738E-5 4.966486781219918E-4 0.0 0.1177268707012151 3.7512825687937673E-4 66-67 1.0566993151531738E-5 4.966486781219918E-4 0.0 0.12419915400652828 3.962622431824402E-4 68-69 1.0566993151531738E-5 5.336331541523527E-4 0.0 0.13041254597962895 4.121127329097378E-4 70-71 1.0566993151531738E-5 5.494836438796504E-4 0.0 0.13648328354518394 4.2267972606126956E-4 72-73 1.0566993151531738E-5 5.494836438796504E-4 0.0 0.14143391983667655 4.8608168497046E-4 74-75 1.0566993151531738E-5 5.547671404554162E-4 0.0 0.1451112334534096 4.966486781219918E-4 76-77 1.0566993151531738E-5 5.706176301827139E-4 0.0 0.1483605838475056 5.019321746977576E-4 78-79 1.0566993151531738E-5 5.811846233342457E-4 0.0 0.151488413820359 5.072156712735234E-4 80-81 1.0566993151531738E-5 5.811846233342457E-4 0.0 0.1527881539779974 5.230661610008211E-4 82-83 1.0566993151531738E-5 5.811846233342457E-4 0.0 0.15332178713214975 5.494836438796504E-4 84-85 1.0566993151531738E-5 5.811846233342457E-4 0.0 0.15377616783766562 5.494836438796504E-4 86-87 1.0566993151531738E-5 5.811846233342457E-4 0.0 0.1539822242041205 5.706176301827139E-4 88-89 1.0566993151531738E-5 6.023186096373091E-4 0.0 0.1540456261630297 5.759011267584798E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 13330 0.0 53.364933 1 GGTATCA 12485 0.0 48.016003 1 TATACAC 17860 0.0 42.90238 3 TTATACA 18430 0.0 39.674255 2 GTATCAA 23215 0.0 36.606762 1 TACACAT 27570 0.0 28.006334 5 ATCAACG 32015 0.0 27.981958 3 TCAACGC 32160 0.0 27.829096 4 CAACGCA 32935 0.0 27.148613 5 TATCAAC 32825 0.0 27.021381 2 ACACATC 27830 0.0 26.820635 6 AACGCAG 34130 0.0 26.258663 6 ACATCTC 29545 0.0 25.406588 8 ATACACA 32270 0.0 25.026224 4 CACATCT 30660 0.0 24.207396 7 GTGGTAT 6430 0.0 23.439238 1 TGGTATC 6110 0.0 23.284927 2 ACGCAGA 40355 0.0 22.17674 7 CGCAGAG 41225 0.0 21.718964 8 CATCTCC 34590 0.0 21.505827 9 >>END_MODULE