##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140177_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7801194 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.331305310443504 33.0 31.0 33.0 18.0 34.0 2 31.57332403219302 33.0 32.0 33.0 27.0 34.0 3 31.856163812872747 33.0 31.0 33.0 29.0 34.0 4 31.921226673763016 33.0 32.0 34.0 29.0 34.0 5 32.24106617525471 33.0 33.0 34.0 31.0 34.0 6 35.89311610504751 38.0 36.0 38.0 31.0 38.0 7 36.150701418270074 38.0 37.0 38.0 33.0 38.0 8 36.41295576036181 38.0 37.0 38.0 34.0 38.0 9 36.65741295499125 38.0 38.0 38.0 34.0 38.0 10-11 36.749946354365754 38.0 38.0 38.0 34.0 38.0 12-13 36.79642122731469 38.0 38.0 38.0 35.0 38.0 14-15 36.80194858633179 38.0 38.0 38.0 35.0 38.0 16-17 36.789098886657605 38.0 38.0 38.0 35.0 38.0 18-19 36.79847097764778 38.0 38.0 38.0 35.0 38.0 20-21 36.8023511930695 38.0 38.0 38.0 35.0 38.0 22-23 36.81220955656124 38.0 38.0 38.0 35.0 38.0 24-25 36.806262682646064 38.0 38.0 38.0 35.0 38.0 26-27 36.762756026053694 38.0 38.0 38.0 35.0 38.0 28-29 36.74489986332479 38.0 38.0 38.0 35.0 38.0 30-31 36.734628253060805 38.0 38.0 38.0 34.5 38.0 32-33 36.71388856085947 38.0 38.0 38.0 34.0 38.0 34-35 36.68146464939002 38.0 38.0 38.0 34.0 38.0 36-37 36.65552877886914 38.0 38.0 38.0 34.0 38.0 38-39 36.641880878981354 38.0 38.0 38.0 34.0 38.0 40-41 36.62864518837178 38.0 38.0 38.0 34.0 38.0 42-43 36.58948822531772 38.0 38.0 38.0 34.0 38.0 44-45 36.521469723723555 38.0 38.0 38.0 34.0 38.0 46-47 36.46890559899418 38.0 38.0 38.0 34.0 38.0 48-49 36.432851412113436 38.0 38.0 38.0 34.0 38.0 50-51 36.421554945886214 38.0 38.0 38.0 34.0 38.0 52-53 36.38581037648922 38.0 38.0 38.0 34.0 38.0 54-55 36.355149907428796 38.0 38.0 38.0 34.0 38.0 56-57 36.32454776730759 38.0 38.0 38.0 33.0 38.0 58-59 36.30375164607224 38.0 38.0 38.0 33.0 38.0 60-61 36.30374441881696 38.0 38.0 38.0 33.0 38.0 62-63 36.29157431583379 38.0 38.0 38.0 33.0 38.0 64-65 36.28161489721357 38.0 38.0 38.0 33.0 38.0 66-67 36.25659356659011 38.0 37.0 38.0 33.0 38.0 68-69 36.24960201761179 38.0 37.0 38.0 33.0 38.0 70-71 36.240244824151176 38.0 37.0 38.0 33.0 38.0 72-73 36.22226928704593 38.0 37.0 38.0 33.0 38.0 74-75 36.21302736213107 38.0 37.0 38.0 33.0 38.0 76-77 36.193665776902435 38.0 37.0 38.0 33.0 38.0 78-79 36.20298446439392 38.0 37.0 38.0 33.0 38.0 80-81 36.16038162701265 38.0 37.0 38.0 33.0 38.0 82-83 36.165504188581394 38.0 37.0 38.0 33.0 38.0 84-85 36.15221781880896 38.0 37.0 38.0 33.0 38.0 86-87 36.11744380995125 38.0 37.0 38.0 33.0 38.0 88-89 36.110682529365526 38.0 37.0 38.0 33.0 38.0 90-91 36.11356305316262 38.0 37.0 38.0 33.0 38.0 92-93 36.09563278698917 38.0 37.0 38.0 33.0 38.0 94-95 36.074039806211196 38.0 37.0 38.0 33.0 38.0 96-97 36.08001273754181 38.0 37.0 38.0 33.0 38.0 98-99 36.116314594478695 38.0 37.0 38.0 33.0 38.0 100-101 35.52711039623141 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 12.0 20 47.0 21 394.0 22 1652.0 23 4997.0 24 12181.0 25 22793.0 26 38026.0 27 56939.0 28 80733.0 29 107998.0 30 139218.0 31 175211.0 32 219823.0 33 283367.0 34 383659.0 35 580775.0 36 1160189.0 37 4533178.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.13635681922537 19.144582226771952 14.601892992277849 25.117167961724835 2 14.32649925126846 20.447639169081043 43.096531120748956 22.129330458901546 3 18.66201602121634 26.295751668967505 29.320128330740218 25.72210397907594 4 12.642513440891229 18.69317696752574 38.19576849389978 30.46854109768325 5 14.275705968350048 37.248595757777835 34.79312113673087 13.682577137141244 6 30.070819928334046 37.733082910128886 18.61981640246352 13.576280759073548 7 26.86939973547639 32.86639199076449 22.380151038417964 17.884057235341157 8 24.223317610099173 37.013898128927444 20.649505703870457 18.113278557102923 9 25.405175156520908 17.57165633876045 21.227058319534166 35.796110185184475 10-11 24.304503721995303 27.04222636745769 28.25663052518128 20.396639385365724 12-13 25.201870024071994 24.462379616014648 28.662787425958346 21.672962933955016 14-15 22.215791582673113 25.83509652496784 26.677377847544875 25.271734044814163 16-17 21.560000943445324 29.000746552386726 27.360446362441444 22.07880614172651 18-19 21.509003718469486 27.924368239295696 29.446103343033347 21.120524699201475 20-21 22.399157445079883 26.98859362819124 29.475635571154058 21.13661335557483 22-23 22.126259297062706 26.86774525285421 29.34234907087702 21.663646379206064 24-25 21.838716172595223 27.025435863470676 29.441250252329105 21.694597711605 26-27 21.761990128117002 27.155051343421494 29.389948610737026 21.693009917724478 28-29 21.646984590886344 27.23253976062365 29.41340132514247 21.707074323347538 30-31 22.010296638186148 27.043426906065644 29.333928193145418 21.61234826260279 32-33 21.74510241761815 27.2147200549088 29.294200438210495 21.745977089262556 34-35 21.890061110973566 27.28895360352554 29.263964280409 21.557021005091894 36-37 21.887358051258467 27.15807318159953 29.268000233467156 21.686568533674855 38-39 21.74270508708353 27.326922701573814 29.28454226657905 21.6458299447636 40-41 22.001195920258805 27.163037490863225 29.182280197297395 21.653486391580575 42-43 21.881482219013957 27.232207885117727 28.995404382470646 21.890905513397673 44-45 21.95022082804563 27.38787884135416 28.824546506904536 21.837353823695675 46-47 21.959095816343233 27.349779711393218 28.606136069182973 22.084988403080573 48-49 21.89411547729743 27.480297973101877 28.609354709905144 22.016231839695553 50-51 21.918367674499013 27.62097755956418 28.437340260599488 22.023314505337318 52-53 22.101008711936174 27.551391136821067 28.264370202053996 22.083229949188762 54-55 22.009849402662244 27.487110645905847 28.387940385259714 22.115099566172198 56-57 22.042407666340225 27.55328198482364 28.310253894531677 22.094056454304457 58-59 22.01164019766152 27.54437903114935 28.381590927660334 22.0623898435288 60-61 22.108368750282647 27.494882053000108 28.41211142028788 21.984637776429366 62-63 21.98649343289595 27.591731557404685 28.38663215543625 22.035142854263114 64-65 21.950826465965527 27.5431815538593 28.379768503411878 22.126223476763293 66-67 22.015941594603706 27.641078438980315 28.197283219035523 22.14569674738045 68-69 21.98747845160432 27.647520078554482 28.20573237338142 22.159269096459774 70-71 21.973567739979156 27.40865505414006 28.273542408335377 22.344234797545408 72-73 21.996870356147312 27.464031754955343 28.203523411459898 22.335574477437447 74-75 21.919534191303725 27.574006387170996 28.173995708281108 22.332463713244174 76-77 22.115817906298084 27.48061460365144 28.09227387634619 22.31129361370429 78-79 22.094492759619612 27.533190020511217 27.991353466492967 22.3809637533762 80-81 22.107817271065116 27.59941368604149 27.95854289258718 22.334226150306215 82-83 22.109761148941654 27.567002808565768 28.035182443504198 22.288053598988387 84-85 22.281225523791353 27.57350997671899 27.945315357923473 22.19994914156618 86-87 22.08559126250591 27.652573288151032 28.010273544791993 22.251561904551068 88-89 22.182118156995955 27.639629819768906 27.96446715750997 22.21378486572517 90-91 22.22649413657557 27.64612469607679 27.97496433965007 22.152416827697568 92-93 22.28531367626559 27.679624835547255 27.92439417731189 22.110667310875264 94-95 22.193087673296326 27.75008290031775 27.966259199294345 22.090570227091575 96-97 22.167396434138322 27.76188936117141 27.970232742896123 22.100481461794143 98-99 22.4180537053178 28.25897663102998 28.07537401443395 21.247595649218265 100-101 22.958864894600588 30.788593309246533 25.477121307868128 20.77542048828476 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2208.0 1 1995.0 2 2340.5 3 2984.0 4 3609.5 5 5227.5 6 6952.5 7 9206.5 8 11966.5 9 13257.5 10 12428.0 11 11339.0 12 12071.0 13 14971.5 14 20892.0 15 28284.0 16 34323.0 17 38037.5 18 38560.0 19 35998.0 20 32222.5 21 28917.0 22 27819.0 23 30440.5 24 36700.0 25 46704.0 26 60323.0 27 74835.0 28 90260.0 29 107624.0 30 124931.5 31 142652.5 32 161593.5 33 181502.5 34 200336.5 35 217268.0 36 237829.0 37 255248.5 38 265249.5 39 273921.0 40 284796.5 41 295536.5 42 302217.5 43 308209.5 44 314654.5 45 319584.5 46 321443.0 47 322146.5 48 322019.5 49 318515.0 50 312276.5 51 303301.0 52 290177.5 53 275029.5 54 259890.5 55 241861.5 56 220747.0 57 199013.5 58 176257.5 59 152098.0 60 127446.5 61 103445.5 62 81019.0 63 61980.5 64 46453.5 65 34593.5 66 25782.5 67 19602.5 68 14928.5 69 11019.0 70 8177.0 71 5815.0 72 4027.0 73 2753.0 74 1782.0 75 1153.5 76 723.0 77 412.0 78 259.5 79 167.0 80 100.0 81 65.5 82 46.0 83 29.5 84 21.0 85 19.0 86 14.0 87 10.5 88 5.5 89 3.0 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.005294061396242678 4 0.0 5 0.04350616072360205 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.5637101192458488E-5 12-13 1.410040565585217E-4 14-15 0.0 16-17 0.0 18-19 6.409275298114622E-6 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 3.98049583577111E-5 46-47 9.970133094585449E-4 48-49 2.6992999433079528E-5 50-51 1.0201547901266155E-4 52-53 0.0015545902942339493 54-55 7.995364342894434E-4 56-57 0.004129234061087125 58-59 0.009050384714731874 60-61 0.01160041412140175 62-63 0.00661486160673285 64-65 0.008725458040059007 66-67 0.006057565914249673 68-69 0.0030116106319166567 70-71 0.00515267969805297 72-73 0.0032358747587625746 74-75 0.0014561910522660573 76-77 0.002305422527067054 78-79 9.050773852572933E-4 80-81 3.610483800220101E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.2035802956502876E-4 94-95 3.631260065398994E-4 96-97 1.5882354219632228E-4 98-99 5.261039407168831E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 91.0 20-21 361.0 22-23 703.0 24-25 1056.0 26-27 2146.0 28-29 4756.0 30-31 13678.0 32-33 17869.0 34-35 24563.0 36-37 38729.0 38-39 45835.0 40-41 46089.0 42-43 53269.0 44-45 63324.0 46-47 63978.0 48-49 59308.0 50-51 53197.0 52-53 45937.0 54-55 49080.0 56-57 48874.0 58-59 55564.0 60-61 55036.0 62-63 52979.0 64-65 56447.0 66-67 59749.0 68-69 61249.0 70-71 60564.0 72-73 56897.0 74-75 58291.0 76-77 61606.0 78-79 64675.0 80-81 65157.0 82-83 60929.0 84-85 59751.0 86-87 62722.0 88-89 65581.0 90-91 68214.0 92-93 67217.0 94-95 72124.0 96-97 116764.0 98-99 662035.0 100-101 5224800.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.1894407671566 #Duplication Level Percentage of deduplicated Percentage of total 1 89.61908336479664 75.44980510547416 2 7.205674748124793 12.132834547892967 3 1.7045983139660634 4.3052753635632275 4 0.642462137169675 2.163541121695488 5 0.29056430082549034 1.2231222996698947 6 0.1626731583005807 0.8217217335091817 7 0.09596190867308546 0.5655285598295214 8 0.06569517483182105 0.44246720241532767 9 0.04392307800166799 0.3328073436359364 >10 0.16505667741758084 2.1675670465323775 >50 0.003213260807106151 0.17091629135264536 >100 0.0010149677274168887 0.14768286831639857 >500 2.630311938760601E-5 0.019952148654185486 >1k 5.260623870435945E-5 0.05677836745868421 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.1274202384916975E-5 0.0 0.0 0.0 3 1.2818550596229244E-5 5.1274202384916975E-5 0.0 0.0 0.0 4 1.2818550596229244E-5 1.5382260715475092E-4 0.0 0.0 0.0 5 1.2818550596229244E-5 1.6664115775098017E-4 0.0 0.0 0.0 6 1.2818550596229244E-5 1.7945970834720942E-4 0.0 0.0 0.0 7 1.2818550596229244E-5 1.9227825894343865E-4 0.0 0.0 0.0 8 1.2818550596229244E-5 2.3073391073212638E-4 0.0 0.0 0.0 9 1.2818550596229244E-5 5.25560574445399E-4 0.0 0.0 0.0 10-11 1.9227825894343865E-5 5.25560574445399E-4 0.0 3.845565178868773E-5 0.0 12-13 2.5637101192458488E-5 5.25560574445399E-4 0.0 3.845565178868773E-5 0.0 14-15 2.5637101192458488E-5 7.178388333888377E-4 0.0 3.845565178868773E-5 6.409275298114622E-6 16-17 2.5637101192458488E-5 7.30657383985067E-4 0.0 3.845565178868773E-5 1.2818550596229244E-5 18-19 3.845565178868773E-5 7.819315863699839E-4 0.0 6.409275298114622E-5 1.2818550596229244E-5 20-21 3.845565178868773E-5 8.652521652454739E-4 0.0 7.691130357737546E-5 1.2818550596229244E-5 22-23 3.845565178868773E-5 9.67800570015308E-4 0.0 7.691130357737546E-5 2.5637101192458488E-5 24-25 3.845565178868773E-5 0.0010383025982945687 0.0 1.2818550596229244E-4 3.845565178868773E-5 26-27 5.1274202384916975E-5 0.001070348974785142 0.0 2.3073391073212638E-4 3.845565178868773E-5 28-29 5.1274202384916975E-5 0.0010767582500832565 0.0 5.768347768303159E-4 4.4864927086802356E-5 30-31 5.1274202384916975E-5 0.0012049437560455489 0.0 0.001794597083472094 5.1274202384916975E-5 32-33 6.409275298114622E-5 0.0012177623066417782 0.0 0.004390353579208516 5.1274202384916975E-5 34-35 7.691130357737546E-5 0.0013972220149889875 0.0 0.00812696107800934 5.1274202384916975E-5 36-37 7.691130357737546E-5 0.0015895002739324264 0.0 0.013914536672206844 6.409275298114622E-5 38-39 7.691130357737546E-5 0.001627955925721114 0.0 0.02566914756894906 6.409275298114622E-5 40-41 8.972985417360471E-5 0.0018394620105588965 0.0 0.06419530138591606 6.409275298114622E-5 42-43 8.972985417360471E-5 0.0019099640388381572 0.0 0.07555253721417517 6.409275298114622E-5 44-45 8.972985417360471E-5 0.002102242297781596 0.0 0.09157572545946172 6.409275298114622E-5 46-47 8.972985417360471E-5 0.0022240185284457736 0.0 0.10959219832246192 7.050202827926083E-5 48-49 8.972985417360471E-5 0.002243246354340118 0.0 0.12578202772549946 7.691130357737546E-5 50-51 8.972985417360471E-5 0.002544482293351505 0.0 0.1422859116181446 7.691130357737546E-5 52-53 8.972985417360471E-5 0.002576528669842078 0.0 0.17216595305795498 8.972985417360471E-5 54-55 9.613912947171934E-5 0.002595756495736422 0.0 0.24689810303397147 1.0254840476983395E-4 56-57 1.0254840476983395E-4 0.0026726677993137975 0.0 0.3289624639510311 1.0254840476983395E-4 58-59 1.0254840476983395E-4 0.0027047141758043706 0.0 0.4218713186725006 1.0254840476983395E-4 60-61 1.2177623066417782E-4 0.002762397653487402 0.0 0.44317574976343366 1.0254840476983395E-4 62-63 1.410040565585217E-4 0.002813671855872319 0.0 0.456391675428146 1.0254840476983395E-4 64-65 1.5382260715475092E-4 0.0032687304020384573 0.0 0.46669779010751433 1.0895768006794856E-4 66-67 1.6023188245286555E-4 0.0032815489526346864 0.0 0.4733121622151686 1.2177623066417782E-4 68-69 1.6664115775098017E-4 0.0033328231550196034 0.0 0.47968298186149455 1.2818550596229244E-4 70-71 1.6664115775098017E-4 0.0033840973574045204 0.0 0.48529750702264296 1.2818550596229244E-4 72-73 1.6664115775098017E-4 0.0033969159080007496 0.0 0.4893481690110514 1.2818550596229244E-4 74-75 1.6664115775098017E-4 0.003422553009193208 0.0 0.49278354057084084 1.2818550596229244E-4 76-77 1.6664115775098017E-4 0.003486645762174354 0.0 0.49573180720797355 1.2818550596229244E-4 78-79 1.6664115775098017E-4 0.0035122828633668128 0.0 0.49840447500728735 1.2818550596229244E-4 80-81 1.6664115775098017E-4 0.0035122828633668128 0.0 0.4995325074597555 1.3459478126040707E-4 82-83 1.6664115775098017E-4 0.0035315106892611567 0.0 0.5000196123824122 1.410040565585217E-4 84-85 1.6664115775098017E-4 0.0036084219928385324 0.0 0.5004682616532803 1.410040565585217E-4 86-87 1.6664115775098017E-4 0.003640468369329105 0.0 0.5006605399122237 1.410040565585217E-4 88-89 1.6664115775098017E-4 0.003768653875291398 0.0 0.5006925862887143 1.474133318566363E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11580 0.0 53.716633 1 GTATCAA 21790 0.0 38.93131 1 TCAACGC 26125 0.0 31.988705 4 ATCAACG 26165 0.0 31.957802 3 TATCAAC 26815 0.0 31.280132 2 CAACGCA 26950 0.0 31.05771 5 AACGCAG 27955 0.0 29.95988 6 GTGGTAT 5540 0.0 26.916224 1 TGGTATC 5395 0.0 26.675468 2 ACGCAGA 31520 0.0 26.543844 7 CGCAGAG 31920 0.0 26.19764 8 GCAGAGT 36735 0.0 22.740223 9 GAGTACT 22200 0.0 21.254097 12-13 CAGAGTA 36330 0.0 19.988323 10-11 GTACATG 25405 0.0 19.860912 1 TACATGG 24815 0.0 19.844011 2 GTACTTT 24430 0.0 19.216759 14-15 ACATGGG 25005 0.0 19.173159 3 AGAGTAC 33920 0.0 18.751583 10-11 AGTACTT 24140 0.0 17.113985 12-13 >>END_MODULE