##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140175_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10873208 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.992782442863227 33.0 30.0 33.0 18.0 34.0 2 31.36600688591628 33.0 32.0 33.0 27.0 34.0 3 31.74406099837325 33.0 31.0 33.0 29.0 34.0 4 31.816042698714124 33.0 32.0 33.0 29.0 34.0 5 32.167779555031046 33.0 33.0 34.0 31.0 34.0 6 35.81796715375996 38.0 36.0 38.0 31.0 38.0 7 36.08491918852283 38.0 37.0 38.0 33.0 38.0 8 36.36362221710465 38.0 37.0 38.0 33.0 38.0 9 36.630090493992206 38.0 38.0 38.0 34.0 38.0 10-11 36.731846847774825 38.0 38.0 38.0 34.0 38.0 12-13 36.78005074491355 38.0 38.0 38.0 34.5 38.0 14-15 36.7897991558701 38.0 38.0 38.0 35.0 38.0 16-17 36.77643552850272 38.0 38.0 38.0 34.5 38.0 18-19 36.78553399327963 38.0 38.0 38.0 35.0 38.0 20-21 36.787526351316174 38.0 38.0 38.0 35.0 38.0 22-23 36.79630470905843 38.0 38.0 38.0 35.0 38.0 24-25 36.789198858001015 38.0 38.0 38.0 35.0 38.0 26-27 36.748457667585996 38.0 38.0 38.0 35.0 38.0 28-29 36.73363852848718 38.0 38.0 38.0 34.0 38.0 30-31 36.72431417454244 38.0 38.0 38.0 34.0 38.0 32-33 36.70488771216961 38.0 38.0 38.0 34.0 38.0 34-35 36.674046596271346 38.0 38.0 38.0 34.0 38.0 36-37 36.64883127159352 38.0 38.0 38.0 34.0 38.0 38-39 36.6394066403695 38.0 38.0 38.0 34.0 38.0 40-41 36.63065857688397 38.0 38.0 38.0 34.0 38.0 42-43 36.5942355768174 38.0 38.0 38.0 34.0 38.0 44-45 36.53270184670843 38.0 38.0 38.0 34.0 38.0 46-47 36.48820392703075 38.0 38.0 38.0 34.0 38.0 48-49 36.45997664946225 38.0 38.0 38.0 34.0 38.0 50-51 36.45053649941344 38.0 38.0 38.0 34.0 38.0 52-53 36.42411814374467 38.0 38.0 38.0 34.0 38.0 54-55 36.39446100883568 38.0 38.0 38.0 34.0 38.0 56-57 36.36766026502434 38.0 38.0 38.0 34.0 38.0 58-59 36.348436022948874 38.0 38.0 38.0 33.5 38.0 60-61 36.35068868735048 38.0 38.0 38.0 33.5 38.0 62-63 36.336037203833556 38.0 38.0 38.0 33.0 38.0 64-65 36.328358953494686 38.0 38.0 38.0 33.0 38.0 66-67 36.298871881922906 38.0 38.0 38.0 33.0 38.0 68-69 36.29255357169036 38.0 37.5 38.0 33.0 38.0 70-71 36.282484099234026 38.0 37.0 38.0 33.0 38.0 72-73 36.26465462725649 38.0 37.0 38.0 33.0 38.0 74-75 36.25502328185938 38.0 37.0 38.0 33.0 38.0 76-77 36.23578974124163 38.0 37.0 38.0 33.0 38.0 78-79 36.24782548647512 38.0 37.0 38.0 33.0 38.0 80-81 36.2008226506332 38.0 37.0 38.0 33.0 38.0 82-83 36.19995918983874 38.0 37.0 38.0 33.0 38.0 84-85 36.18271133750103 38.0 37.0 38.0 33.0 38.0 86-87 36.14789303031599 38.0 37.0 38.0 33.0 38.0 88-89 36.142065872326285 38.0 37.0 38.0 33.0 38.0 90-91 36.140255938181156 38.0 37.0 38.0 33.0 38.0 92-93 36.11700031250859 38.0 37.0 38.0 33.0 38.0 94-95 36.0973023867977 38.0 37.0 38.0 33.0 38.0 96-97 36.10575594139958 38.0 37.0 38.0 33.0 38.0 98-99 36.146551881097 38.0 37.0 38.0 33.0 38.0 100-101 35.57431047027481 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 7.0 19 15.0 20 74.0 21 530.0 22 2462.0 23 7367.0 24 17184.0 25 32079.0 26 52099.0 27 78730.0 28 109648.0 29 146844.0 30 188782.0 31 240455.0 32 304639.0 33 392986.0 34 538256.0 35 823887.0 36 1678736.0 37 6258426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.2454907512116 18.73429626288764 14.429237443080275 25.59097554282048 2 14.552540519780363 20.33534169492573 42.50757458148506 22.60454320380885 3 18.776152181356924 26.020755364442127 29.088496199503727 26.11459625469722 4 12.891715122160818 18.643062838492558 37.219659552176324 31.245562487170297 5 14.787152957577806 36.80893763624165 34.475886217083485 13.928023189097061 6 30.826183036321943 37.1003571347113 18.201592391132408 13.871867437834354 7 27.364132094226466 32.44888720973608 22.13115945174598 18.055821244291472 8 24.89698532392648 36.58124630743751 20.047671303629986 18.474097065006024 9 25.628728890314616 17.273733749965974 20.93581765381477 36.161719705904645 10-11 24.820823332067533 26.80901320098109 27.63504824289651 20.735115224054873 12-13 25.579916782532607 24.270955058484173 27.994675531522557 22.15445262746066 14-15 22.605822614899974 25.415320180360762 26.08871393284824 25.89014327189102 16-17 22.089580186454633 28.68073065465132 26.58868017608051 22.641008982813535 18-19 22.09003543388483 27.62268044536626 28.533478804047522 21.75380531670138 20-21 23.14508897513296 26.568012649130374 28.601068276555985 21.68583009918068 22-23 22.92632517080889 26.484330948369806 28.37334997079472 22.215993910026576 24-25 22.60184014422939 26.605903786481598 28.639372459504514 22.152883609784496 26-27 22.366225552763414 26.679067504729836 28.643721709763398 22.31098523274335 28-29 22.467747728295826 26.75386652815106 28.50772154199264 22.270664201560475 30-31 22.810115889718947 26.407510930077933 28.509387279335073 22.272985900868044 32-33 22.667030761383042 26.534899495072708 28.38162208816637 22.416447655377883 34-35 22.762593742526242 26.70262688025966 28.33929473392472 22.195484643289376 36-37 22.862796845432296 26.516730633633223 28.245269039186592 22.375203481747892 38-39 22.50078501778126 26.82648094212613 28.330805183100953 22.341928856991654 40-41 22.750966786173652 26.610512226465687 28.266707083022936 22.371813904337724 42-43 22.58515658414006 26.76461493440562 27.99691961741648 22.653308864037836 44-45 22.527521151849207 26.82291886803167 27.950213558970887 22.699346421148235 46-47 22.67794658216527 26.803619585874483 27.796554670067437 22.721879161892808 48-49 22.78239361075306 27.060948838158595 27.536303367742516 22.620354183345825 50-51 22.747005390026093 27.071399562545622 27.508741274583908 22.672853772844373 52-53 23.097189447766066 27.005340089338574 27.19086689940057 22.70660356349478 54-55 23.06200849839105 27.01969912945415 27.11241827803748 22.805874094117314 56-57 23.050564480575908 27.263591958893656 26.97886043974615 22.706983120784287 58-59 22.87189255307033 27.17429587097679 27.251393100015846 22.70241847593703 60-61 22.962645669059675 27.19184214445941 27.099026867241516 22.7464853192394 62-63 22.912293118674302 27.138652741464895 27.309802207949097 22.6392519319117 64-65 23.04072193459543 26.99771593542355 27.22488748309782 22.736674646883202 66-67 23.061153634328818 27.211997608641337 26.91157074850311 22.815278008526736 68-69 23.002063113971737 27.12935745719619 27.047540312022235 22.82103911680984 70-71 22.999071008100067 26.954591285122508 27.057123517987257 22.989214188790164 72-73 22.9691727085486 27.06745727295015 26.954145950036697 23.00922406846455 74-75 22.813815766433457 27.119920537777354 27.00377068239951 23.06249301338968 76-77 22.930513013473767 27.159729257870268 26.897196341430195 23.01256138722577 78-79 22.797331362159472 27.20635133774212 26.9961724214696 23.000144878628813 80-81 22.87307810361646 27.098756431876403 27.06073598201514 22.967429482492 82-83 23.145813533845764 26.962602913696248 27.145357885204696 22.746225667253288 84-85 23.074502623077226 27.015691855623587 27.05795142326643 22.85185409803276 86-87 22.838132523096615 27.227665164992853 27.012426909309244 22.921775402601288 88-89 23.11885707462714 27.065161886026257 26.815929452829344 23.000051586517255 90-91 23.124855977190478 27.106643935890496 26.90135448966519 22.867145597253838 92-93 23.141885005863568 27.134560526497907 26.990436273901018 22.733118193737504 94-95 22.76349500955752 27.423991475615672 26.975669207489055 22.836844307337753 96-97 22.860610735445487 27.354595618786608 26.958751604725883 22.826042041042026 98-99 23.20100701633458 27.94836705241862 27.005688985943593 21.844936945303203 100-101 23.87383098839211 30.366514190318366 24.381160746780324 21.3784940745092 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3500.0 1 2951.5 2 2588.5 3 3254.5 4 4446.5 5 6286.0 6 7730.5 7 8058.5 8 7731.5 9 7417.5 10 7415.0 11 8579.0 12 11010.0 13 17296.0 14 28037.5 15 40684.5 16 51766.0 17 57461.0 18 58800.0 19 54008.0 20 47495.5 21 42803.5 22 40228.0 23 43443.0 24 51381.0 25 64019.0 26 80553.0 27 98759.5 28 118446.0 29 138419.5 30 157415.5 31 177052.0 32 198799.5 33 221070.0 34 242105.0 35 262892.0 36 287666.5 37 308065.5 38 322812.0 39 339003.5 40 356557.0 41 373711.5 42 384443.0 43 393985.0 44 405609.5 45 422583.5 46 443638.0 47 464484.0 48 477496.5 49 477618.0 50 471049.0 51 468279.5 52 445347.0 53 410120.5 54 390942.0 55 372257.0 56 348903.0 57 320175.0 58 289718.5 59 254811.5 60 218188.5 61 185150.0 62 150977.0 63 125541.0 64 106613.5 65 83122.5 66 62892.5 67 44027.0 68 28518.0 69 20995.5 70 15530.0 71 10828.0 72 7773.5 73 5212.0 74 3388.5 75 2182.5 76 1333.0 77 799.5 78 504.0 79 318.0 80 199.0 81 122.5 82 88.5 83 66.0 84 42.5 85 29.0 86 24.5 87 18.5 88 11.0 89 4.5 90 2.0 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.005049107862187497 4 0.0 5 0.04278406152075818 6 0.0 7 0.0 8 0.0 9 0.0 10-11 9.196917781762292E-6 12-13 9.196917781762292E-5 14-15 4.598458890881146E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.731007976846728E-5 46-47 0.0011804513024328764 48-49 2.4297404113939274E-5 50-51 8.817069179753442E-5 52-53 0.0014255478670017296 54-55 7.08003112621008E-4 56-57 0.004050128124245469 58-59 0.009022064443881922 60-61 0.011230965390597807 62-63 0.006393564347261351 64-65 0.008628059206022437 66-67 0.005708585052632526 68-69 0.0027926223457615936 70-71 0.004800306963913466 72-73 0.0030423272104616924 74-75 0.0013552891623272115 76-77 0.002302771327860541 78-79 8.502713083235046E-4 80-81 4.404754815735167E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.725578667014277E-4 94-95 2.696217530351021E-4 96-97 1.395609727326985E-4 98-99 5.448650663583023E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1312.0 20-21 4255.0 22-23 2403.0 24-25 2699.0 26-27 4580.0 28-29 8845.0 30-31 21468.0 32-33 27360.0 34-35 37358.0 36-37 57972.0 38-39 69176.0 40-41 67090.0 42-43 77127.0 44-45 91285.0 46-47 90041.0 48-49 83750.0 50-51 107081.0 52-53 72143.0 54-55 77046.0 56-57 79852.0 58-59 80746.0 60-61 78042.0 62-63 75013.0 64-65 79927.0 66-67 83777.0 68-69 86387.0 70-71 84831.0 72-73 78827.0 74-75 80863.0 76-77 84107.0 78-79 87650.0 80-81 89427.0 82-83 83469.0 84-85 82491.0 86-87 86120.0 88-89 91120.0 90-91 96487.0 92-93 91497.0 94-95 99423.0 96-97 160140.0 98-99 924874.0 100-101 7185147.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.96841994051867 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0820221895544 73.90994626173551 2 7.484375419701649 12.419336056286042 3 1.810094239654374 4.505419770226738 4 0.657694907781378 2.1827162920618424 5 0.34504621756534565 1.4313969738924581 6 0.1756171446988303 0.8742406206076432 7 0.11647318468088949 0.6764517268889537 8 0.07410565444876939 0.49187432466179715 9 0.05450597686459803 0.4070047299993147 >10 0.19278024379558747 2.5567086397296315 >50 0.005660236732709379 0.31424987841624685 >100 0.0016030129644183779 0.2087480875468512 >500 0.0 0.0 >1k 2.157155702716062E-5 0.02190663794693178 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.839383556352458E-5 0.0 0.0 0.0 3 0.0 1.839383556352458E-5 0.0 0.0 0.0 4 0.0 4.598458890881146E-5 0.0 0.0 9.19691778176229E-6 5 0.0 5.518150669057375E-5 0.0 0.0 9.19691778176229E-6 6 0.0 5.518150669057375E-5 0.0 2.7590753345286874E-5 2.7590753345286874E-5 7 0.0 5.518150669057375E-5 0.0 2.7590753345286874E-5 2.7590753345286874E-5 8 0.0 5.518150669057375E-5 0.0 3.678767112704916E-5 2.7590753345286874E-5 9 0.0 1.1955993116290978E-4 0.0 6.437842447233604E-5 4.598458890881146E-5 10-11 0.0 1.1955993116290978E-4 0.0 8.277226003586063E-5 4.598458890881146E-5 12-13 9.19691778176229E-6 1.2415839005379094E-4 0.0 1.1496147227202864E-4 4.598458890881146E-5 14-15 9.19691778176229E-6 2.023321911987704E-4 0.0 1.1955993116290978E-4 5.977996558145489E-5 16-17 9.19691778176229E-6 2.20726026762295E-4 0.0 1.3795376672643436E-4 6.437842447233604E-5 18-19 9.19691778176229E-6 2.52915238998463E-4 0.0 1.7474143785348355E-4 6.437842447233604E-5 20-21 9.19691778176229E-6 2.8510445123463104E-4 0.0 1.9313527341700812E-4 6.437842447233604E-5 22-23 9.19691778176229E-6 3.264905812525613E-4 0.0 2.0693065008965157E-4 8.277226003586063E-5 24-25 9.19691778176229E-6 3.8627054683401625E-4 0.0 2.4371832121670073E-4 9.196917781762292E-5 26-27 9.19691778176229E-6 4.322551357428277E-4 0.0 3.080967456890368E-4 9.196917781762292E-5 28-29 9.19691778176229E-6 4.368535946337089E-4 0.0 5.748073613601433E-4 9.196917781762292E-5 30-31 9.19691778176229E-6 4.7823972465163914E-4 0.0 0.001236985441647028 1.011660955993852E-4 32-33 9.19691778176229E-6 4.7823972465163914E-4 0.0 0.002786666087873974 1.103630133811475E-4 34-35 9.19691778176229E-6 5.334212313422129E-4 0.0 0.004777798787625511 1.1955993116290978E-4 36-37 9.19691778176229E-6 5.794058202510244E-4 0.0 0.007978326175678788 1.1955993116290978E-4 38-39 9.19691778176229E-6 6.345873269415981E-4 0.0 0.012585981984341695 1.1955993116290978E-4 40-41 9.19691778176229E-6 6.897688336321719E-4 0.0 0.017727059024346816 1.1955993116290978E-4 42-43 9.19691778176229E-6 7.26556504759221E-4 0.0 0.022449676305281753 1.2875684894467207E-4 44-45 9.19691778176229E-6 8.231241414677251E-4 0.0 0.027816077830940047 1.3795376672643436E-4 46-47 9.19691778176229E-6 8.921010248309423E-4 0.0 0.03376648363574025 1.4255222561731552E-4 48-49 9.19691778176229E-6 8.921010248309423E-4 0.0 0.039923820090630106 1.4715068450819665E-4 50-51 9.19691778176229E-6 0.0010576455449026636 0.0 0.0461685272644467 1.4715068450819665E-4 52-53 1.839383556352458E-5 0.0010668424626844258 0.0 0.05202696389142928 1.5634760228995894E-4 54-55 2.7590753345286874E-5 0.0010714409215753068 0.0 0.0578762036006301 1.6554452007172126E-4 56-57 2.7590753345286874E-5 0.001076039380466188 0.0 0.06405193389108348 1.7014297896260241E-4 58-59 2.7590753345286874E-5 0.0010806378393570693 0.0 0.07004372582590161 1.7474143785348355E-4 60-61 3.218921223616802E-5 0.0010944332160297127 0.0 0.07573661793281247 1.7474143785348355E-4 62-63 3.678767112704916E-5 0.0011266224282658805 0.0 0.08122257938963368 1.9313527341700812E-4 64-65 3.678767112704916E-5 0.001259977736101434 0.0 0.08658898091529196 1.9313527341700812E-4 66-67 3.678767112704916E-5 0.0012829700305558396 0.0 0.092042753159877 1.9313527341700812E-4 68-69 3.678767112704916E-5 0.0013105607839011264 0.0 0.09766666838342465 1.9313527341700812E-4 70-71 3.678767112704916E-5 0.001328954619464651 0.0 0.10296409302571974 2.023321911987704E-4 72-73 3.678767112704916E-5 0.0013427499961372945 0.0 0.10706591835638571 2.023321911987704E-4 74-75 3.678767112704916E-5 0.0013703407494825813 0.0 0.11017447656662137 2.023321911987704E-4 76-77 3.678767112704916E-5 0.0014117268795005118 0.0 0.11337040549578375 2.0693065008965157E-4 78-79 3.678767112704916E-5 0.0014439160917366798 0.0 0.11602831473471306 2.2532448565317615E-4 80-81 3.678767112704916E-5 0.0014439160917366798 0.0 0.11715033870408806 2.4371832121670073E-4 82-83 3.678767112704916E-5 0.0014439160917366798 0.0 0.11756879846315825 2.6671061567110646E-4 84-85 3.678767112704916E-5 0.001453113009518442 0.0 0.11796426592777404 2.6671061567110646E-4 86-87 3.678767112704916E-5 0.001489900680645491 0.0 0.11817579503675456 2.6671061567110646E-4 88-89 3.678767112704916E-5 0.0015772713995722328 0.0 0.11823557500233602 2.6671061567110646E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16090 0.0 52.784515 1 GTATCAA 30115 0.0 39.13366 1 TCAACGC 36970 0.0 31.468231 4 ATCAACG 37140 0.0 31.33709 3 TATCAAC 37905 0.0 30.852427 2 GTGGTAT 7270 0.0 30.643057 1 CAACGCA 38080 0.0 30.573587 5 AACGCAG 39260 0.0 29.68846 6 TGGTATC 7250 0.0 29.3606 2 ACGCAGA 44430 0.0 26.204744 7 CGCAGAG 49070 0.0 23.75319 8 GCAGAGT 51805 0.0 22.474216 9 GAGTACT 28720 0.0 20.936842 12-13 GTACATG 38360 0.0 20.578934 1 TACATGG 38415 0.0 20.269045 2 ATACAAC 11480 0.0 20.073454 6 CAGAGTA 50685 0.0 19.792479 10-11 ACATGGG 38845 0.0 19.31255 3 TATATAC 14425 0.0 19.237383 3 TATACAA 13395 0.0 18.882233 5 >>END_MODULE