##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140173_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11093200 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.133809180398803 33.0 30.0 33.0 18.0 34.0 2 31.520328669815743 33.0 32.0 33.0 27.0 34.0 3 31.847240471640283 33.0 31.0 33.0 29.0 34.0 4 31.919705675548986 33.0 32.0 34.0 29.0 34.0 5 32.244996484332745 33.0 33.0 34.0 31.0 34.0 6 35.91539393502326 38.0 36.0 38.0 31.0 38.0 7 36.16557332419861 38.0 37.0 38.0 33.0 38.0 8 36.438558305989254 38.0 37.0 38.0 34.0 38.0 9 36.677352612411205 38.0 38.0 38.0 34.0 38.0 10-11 36.773168788086394 38.0 38.0 38.0 34.5 38.0 12-13 36.819205233836946 38.0 38.0 38.0 35.0 38.0 14-15 36.82192667580139 38.0 38.0 38.0 35.0 38.0 16-17 36.81337233620596 38.0 38.0 38.0 35.0 38.0 18-19 36.824986117621606 38.0 38.0 38.0 35.0 38.0 20-21 36.828856254437525 38.0 38.0 38.0 35.0 38.0 22-23 36.83623237386914 38.0 38.0 38.0 35.0 38.0 24-25 36.83040501749994 38.0 38.0 38.0 35.0 38.0 26-27 36.78445134833768 38.0 38.0 38.0 35.0 38.0 28-29 36.767241472004834 38.0 38.0 38.0 35.0 38.0 30-31 36.75564052403956 38.0 38.0 38.0 35.0 38.0 32-33 36.735805676946065 38.0 38.0 38.0 35.0 38.0 34-35 36.70113355339818 38.0 38.0 38.0 34.0 38.0 36-37 36.67248974734598 38.0 38.0 38.0 34.0 38.0 38-39 36.65818448144127 38.0 38.0 38.0 34.0 38.0 40-41 36.64450175440376 38.0 38.0 38.0 34.0 38.0 42-43 36.605740054677966 38.0 38.0 38.0 34.0 38.0 44-45 36.53468696116291 38.0 38.0 38.0 34.0 38.0 46-47 36.484244816840985 38.0 38.0 38.0 34.0 38.0 48-49 36.44653651236244 38.0 38.0 38.0 34.0 38.0 50-51 36.43290055611816 38.0 38.0 38.0 34.0 38.0 52-53 36.400298135918284 38.0 38.0 38.0 34.0 38.0 54-55 36.37229888654038 38.0 38.0 38.0 34.0 38.0 56-57 36.347623116908636 38.0 38.0 38.0 34.0 38.0 58-59 36.32768118689237 38.0 38.0 38.0 33.5 38.0 60-61 36.32859918959116 38.0 38.0 38.0 33.5 38.0 62-63 36.315047930000844 38.0 38.0 38.0 33.0 38.0 64-65 36.30794010872257 38.0 38.0 38.0 33.0 38.0 66-67 36.284527612901634 38.0 38.0 38.0 33.0 38.0 68-69 36.280623830815536 38.0 38.0 38.0 33.0 38.0 70-71 36.27062559528376 38.0 37.5 38.0 33.0 38.0 72-73 36.25582536399192 38.0 37.0 38.0 33.0 38.0 74-75 36.24961911311807 38.0 37.0 38.0 33.0 38.0 76-77 36.23436641969711 38.0 37.0 38.0 33.0 38.0 78-79 36.25093046896195 38.0 37.0 38.0 33.0 38.0 80-81 36.209549668074416 38.0 37.0 38.0 33.0 38.0 82-83 36.214454942275815 38.0 37.0 38.0 33.0 38.0 84-85 36.20373775810225 38.0 37.0 38.0 33.0 38.0 86-87 36.16695098144077 38.0 37.0 38.0 33.0 38.0 88-89 36.1636528580475 38.0 37.0 38.0 33.0 38.0 90-91 36.16968531399563 38.0 37.0 38.0 33.0 38.0 92-93 36.15094561247026 38.0 37.0 38.0 33.0 38.0 94-95 36.12913559906722 38.0 37.0 38.0 33.0 38.0 96-97 36.142983515545815 38.0 37.0 38.0 33.0 38.0 98-99 36.176995514124485 38.0 37.0 38.0 33.0 38.0 100-101 35.57355490723576 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 19.0 20 68.0 21 498.0 22 2359.0 23 6987.0 24 16619.0 25 31687.0 26 52291.0 27 79700.0 28 113746.0 29 153200.0 30 195846.0 31 245245.0 32 308081.0 33 396860.0 34 539625.0 35 819342.0 36 1655702.0 37 6475319.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.36844192838856 19.839559369703963 14.870298921862041 24.921699780045433 2 13.779315256192984 20.73208812605921 43.986108607074605 21.502488010673204 3 17.815056263604784 27.399810288042325 30.079180672242394 24.7059527761105 4 11.915804276493708 19.403760862510367 39.54091695813652 29.139517902859406 5 13.36241186144215 37.87003764757023 35.68018368803696 13.087366802950662 6 28.625301986802725 39.27549309486893 19.142393538383875 12.956811379944472 7 25.66716547073883 33.61728806836621 23.42142934410269 17.29411711679227 8 23.603486820755055 37.45209678000938 21.311902787293118 17.632513611942453 9 25.13560559622111 17.520724407745288 21.895755958605275 35.44791403742833 10-11 23.625142671907057 27.52510513989363 29.017880463940216 19.8318717242591 12-13 24.72122526386919 24.96802090941232 29.298165558569018 21.012588268149475 14-15 21.66977968485198 26.330436663902212 27.538956297551653 24.460827353694157 16-17 20.80759834853784 29.417300688710203 28.141870695561245 21.63323026719071 18-19 20.63882471418638 28.39060994080202 30.387243103308474 20.583322241703126 20-21 21.792031175072164 27.459830286139447 30.334674708940547 20.413463829847846 22-23 21.400816919699313 27.339218659107654 30.16774057446724 21.092223846725798 24-25 21.033342632142418 27.4764796331737 30.417645761537297 21.072531973146578 26-27 21.080622863270023 27.63022836576398 30.240301241163376 21.048847529802618 28-29 20.925161660981896 27.870164718542895 30.199197978924214 21.005475641551 30-31 21.366075056277055 27.545873246912162 30.150218318445564 20.937833378365216 32-33 21.097770045698255 27.6784808364476 30.090711340153 21.133037777701144 34-35 21.141629792653564 27.786862153393958 30.09253477315039 20.978973280802084 36-37 21.242243580835567 27.645288056515525 30.047393947954138 21.065074414694767 38-39 21.05491483440262 27.787363177310247 30.115771740392134 21.041950247895 40-41 21.368880726923788 27.731195212840028 29.951260596385698 20.948663463850494 42-43 21.30135872014484 27.778103335581545 29.706758924167264 21.213779020106358 44-45 21.4376311592319 28.01463836379059 29.42226104616031 21.1254694308172 46-47 21.39137452594558 27.92491170360907 29.150067820405862 21.533645950039496 48-49 21.46324500282823 27.93603478475778 29.20613387079738 21.394586341616613 50-51 21.288784178552824 28.143203135669552 28.99381203251957 21.574200653258053 52-53 21.457119731411023 28.125614924907232 28.83950470874868 21.57776063493306 54-55 21.51381361857681 28.045956256670063 28.890936077820438 21.549294046932694 56-57 21.57547928559348 28.216871442710424 28.742236717893583 21.465412553802512 58-59 21.521758303760784 28.255290203306505 28.912642097105177 21.310309395827534 60-61 21.528406178596857 28.22382963039794 28.83301394403655 21.414750246968655 62-63 21.48839809010793 28.17846856454863 28.791954064776203 21.541179280567242 64-65 21.392736179644334 28.16886768082039 28.866636233691455 21.571759905843823 66-67 21.5140217767814 28.20993389680297 28.64085100601311 21.635193320402514 68-69 21.541145383490537 28.14526606429577 28.765862710577267 21.547725841636424 70-71 21.50900163321438 27.865459358655354 28.85913499659352 21.76640401153675 72-73 21.570932318263736 27.95273024969126 28.932518544874615 21.54381888717039 74-75 21.423992892088393 28.13999097135594 28.795801380129515 21.64021475642615 76-77 21.44070876933198 28.111149572111742 28.72183829815993 21.72630336039635 78-79 21.496125386247 28.10027083786444 28.669784139290044 21.733819636598515 80-81 21.454883353965236 28.058765571844436 28.719255511227935 21.76709556296239 82-83 21.593739906564785 28.000170518120875 28.85319691585685 21.55289265945749 84-85 21.868774934126048 28.062399428219514 28.56075461117663 21.508071026477808 86-87 21.517960504104845 28.188477057792266 28.612586131386404 21.680976306716484 88-89 21.686675328188713 28.13347119995892 28.581921955356183 21.59793151649619 90-91 21.746341541328302 28.131735582388895 28.64253446155301 21.479388414729797 92-93 21.724469509866207 28.19052538381165 28.561497505345184 21.52350760097696 94-95 21.4916254871404 28.33848920215123 28.546412545163825 21.623472765544545 96-97 21.480949870371088 28.321093961614363 28.669229820454284 21.528726347560266 98-99 21.799894760861516 28.878947558738776 28.584807907399533 20.736349773000175 100-101 22.388652491711305 31.34905314471113 26.03813214981276 20.224162213764806 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2915.0 1 2939.0 2 3798.0 3 4946.0 4 6691.5 5 10386.0 6 13421.0 7 15947.5 8 18359.0 9 19040.0 10 18001.0 11 16933.5 12 18321.5 13 23527.5 14 35284.0 15 50106.0 16 61728.0 17 68917.0 18 70134.5 19 65407.5 20 58112.5 21 51141.0 22 48525.5 23 53431.0 24 64465.0 25 80698.5 26 103970.0 27 130104.0 28 155305.5 29 181407.0 30 206104.5 31 231088.0 32 261328.5 33 292558.5 34 323195.5 35 354353.0 36 385529.0 37 411233.0 38 422465.5 39 428637.0 40 443701.0 41 454731.0 42 456828.0 43 461845.0 44 467914.0 45 469885.5 46 468579.5 47 465444.0 48 457124.0 49 442410.5 50 424223.5 51 402571.0 52 376221.5 53 352125.5 54 329523.5 55 301271.5 56 271289.0 57 239571.5 58 206713.0 59 175828.0 60 143843.0 61 111974.5 62 84123.0 63 62413.5 64 46197.0 65 33950.5 66 24875.0 67 18572.0 68 13663.5 69 9784.0 70 7263.0 71 5411.5 72 3892.0 73 2777.0 74 1922.0 75 1221.0 76 753.5 77 395.5 78 231.5 79 165.0 80 118.5 81 78.0 82 47.0 83 26.5 84 18.0 85 15.0 86 13.0 87 9.0 88 5.0 89 3.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.005354631666245988 4 0.0 5 0.0435852594382144 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.1550859986297914E-5 12-13 1.2620343994519166E-4 14-15 0.0 16-17 0.0 18-19 4.507265712328273E-6 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 7.03785040401484E-5 46-47 0.0012370038761350577 48-49 4.307316915819425E-5 50-51 1.2073031797613103E-4 52-53 0.0015675623256938848 54-55 9.617061373436087E-4 56-57 0.004136485414386281 58-59 0.008908780673905088 60-61 0.011191638662817173 62-63 0.006580079054369529 64-65 0.008658054760890743 66-67 0.005889039644859914 68-69 0.0030450638159863763 70-71 0.004764631168848263 72-73 0.002848928648688297 74-75 0.001593075432121711 76-77 0.0021823373743037303 78-79 8.697456355042641E-4 80-81 5.6939416792219E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.4180954219378933E-4 94-95 2.386694369823782E-4 96-97 1.0883012572660736E-4 98-99 6.234507249485029E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 545.0 22-23 1158.0 24-25 1833.0 26-27 3791.0 28-29 8650.0 30-31 22316.0 32-33 28449.0 34-35 38418.0 36-37 61655.0 38-39 77955.0 40-41 76456.0 42-43 89492.0 44-45 105664.0 46-47 104514.0 48-49 96584.0 50-51 84717.0 52-53 80089.0 54-55 83916.0 56-57 87230.0 58-59 86159.0 60-61 84658.0 62-63 82538.0 64-65 85080.0 66-67 89631.0 68-69 91283.0 70-71 91802.0 72-73 85725.0 74-75 86744.0 76-77 91696.0 78-79 95442.0 80-81 96755.0 82-83 90482.0 84-85 89737.0 86-87 92627.0 88-89 96892.0 90-91 100396.0 92-93 97469.0 94-95 103800.0 96-97 162593.0 98-99 888979.0 100-101 7249148.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.56972722035799 #Duplication Level Percentage of deduplicated Percentage of total 1 87.07991349413207 69.2892496310046 2 8.14286803255402 12.958515762833928 3 2.3838820284110405 5.690545281785405 4 1.012879955207345 3.2237832697126745 5 0.5134967374139866 2.042939766228735 6 0.2768200476819349 1.321589740990683 7 0.1779140523374108 0.990960082920939 8 0.10380286581136217 0.660765257384121 9 0.06736173598683418 0.4823959461805951 >10 0.23667253658938994 2.7762841570370496 >50 0.0029019541384520207 0.15179121082129807 >100 0.0012481750162930364 0.17225020822154183 >500 1.0835745669580637E-4 0.060301957661197454 >1k 1.3002726318341758E-4 0.17862772721727901 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 9.014531424656546E-6 0.0 5 0.0 0.0 0.0 1.802906284931309E-5 0.0 6 0.0 0.0 0.0 1.802906284931309E-5 0.0 7 0.0 0.0 0.0 1.802906284931309E-5 0.0 8 0.0 9.014531424656546E-6 0.0 1.802906284931309E-5 0.0 9 0.0 2.704359427396964E-5 0.0 1.802906284931309E-5 0.0 10-11 0.0 2.704359427396964E-5 0.0 7.662351710958063E-5 0.0 12-13 0.0 2.704359427396964E-5 0.0 9.9159845671222E-5 0.0 14-15 0.0 7.211625139725237E-5 0.0 1.0366711138355027E-4 0.0 16-17 0.0 7.211625139725237E-5 0.0 1.0817437709587856E-4 0.0 18-19 0.0 7.662351710958063E-5 0.0 1.4873976850683301E-4 0.0 20-21 0.0 8.113078282190892E-5 0.0 1.6226156564381783E-4 0.0 22-23 0.0 8.56380485342372E-5 0.0 1.9831969134244404E-4 0.0 24-25 0.0 9.9159845671222E-5 0.0 2.524068798903833E-4 0.0 26-27 0.0 9.9159845671222E-5 0.0 2.9297227130133775E-4 0.0 28-29 0.0 9.9159845671222E-5 0.0 4.867846969314535E-4 0.0 30-31 0.0 1.0817437709587856E-4 0.0 0.0013116143222875274 0.0 32-33 0.0 1.0817437709587856E-4 0.0 0.0029387372444380343 0.0 34-35 4.507265712328273E-6 1.307107056575199E-4 0.0 0.004962499549273429 0.0 36-37 9.014531424656546E-6 1.532470342191613E-4 0.0 0.007946309450834747 0.0 38-39 9.014531424656546E-6 1.5775429993148955E-4 0.0 0.012769083763025997 9.014531424656546E-6 40-41 9.014531424656546E-6 1.7127609706847437E-4 0.0 0.017911873940792557 1.352179713698482E-5 42-43 9.014531424656546E-6 1.7127609706847437E-4 0.0 0.023347636389860454 1.802906284931309E-5 44-45 9.014531424656546E-6 2.0733422276710057E-4 0.0 0.029234125410161182 1.802906284931309E-5 46-47 9.014531424656546E-6 2.343778170410702E-4 0.0 0.035629935455955 1.802906284931309E-5 48-49 9.014531424656546E-6 2.343778170410702E-4 0.0 0.04193560018750225 1.802906284931309E-5 50-51 9.014531424656546E-6 2.4339234846572675E-4 0.0 0.04841704828183031 1.802906284931309E-5 52-53 9.014531424656546E-6 2.4339234846572675E-4 0.0 0.05445678433635019 1.802906284931309E-5 54-55 9.014531424656546E-6 2.4339234846572675E-4 0.0 0.060600187502253634 1.802906284931309E-5 56-57 9.014531424656546E-6 2.524068798903833E-4 0.0 0.06706360653373238 1.802906284931309E-5 58-59 9.014531424656546E-6 2.614214113150398E-4 0.0 0.07332419860815635 1.802906284931309E-5 60-61 9.014531424656546E-6 2.7494320845202467E-4 0.0 0.08002199545667615 1.802906284931309E-5 62-63 9.014531424656546E-6 2.9297227130133775E-4 0.0 0.08616990588829193 1.802906284931309E-5 64-65 9.014531424656546E-6 3.3353766271229223E-4 0.0 0.0919031478743735 1.802906284931309E-5 66-67 9.014531424656546E-6 3.425521941369488E-4 0.0 0.09775357876897559 1.802906284931309E-5 68-69 9.014531424656546E-6 3.921321169725598E-4 0.0 0.10352738614646811 1.802906284931309E-5 70-71 9.014531424656546E-6 4.1016117982187287E-4 0.0 0.10910738109833051 1.802906284931309E-5 72-73 9.014531424656546E-6 4.191757112465294E-4 0.0 0.11342083438502866 1.802906284931309E-5 74-75 9.014531424656546E-6 4.326975083835142E-4 0.0 0.11680579093498719 1.802906284931309E-5 76-77 9.014531424656546E-6 4.5523383694515563E-4 0.0 0.11978960083654852 1.802906284931309E-5 78-79 9.014531424656546E-6 4.687556340821404E-4 0.0 0.12269678722100025 1.802906284931309E-5 80-81 9.014531424656546E-6 4.687556340821404E-4 0.0 0.12402643060613709 1.802906284931309E-5 82-83 1.802906284931309E-5 4.687556340821404E-4 0.0 0.12463941874301374 1.802906284931309E-5 84-85 1.802906284931309E-5 4.7326289979446865E-4 0.0 0.1250946525799589 1.802906284931309E-5 86-87 1.802906284931309E-5 4.7777016550679694E-4 0.0 0.12533804492842462 1.802906284931309E-5 88-89 1.802906284931309E-5 4.957992283561101E-4 0.0 0.12542819024267118 1.802906284931309E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17495 0.0 52.03202 1 GTATCAA 33020 0.0 39.119766 1 ATCAACG 40425 0.0 31.508581 3 TCAACGC 40975 0.0 31.104324 4 CAACGCA 41485 0.0 30.72194 5 TATCAAC 41930 0.0 30.530958 2 AACGCAG 42970 0.0 29.82938 6 ACGCAGA 47895 0.0 26.610235 7 CGCAGAG 48655 0.0 26.17697 8 ATATGCG 1065 0.0 22.936335 5 GCAGAGT 55545 0.0 22.891321 9 GTGGTAT 9245 0.0 22.622625 1 TGGTATC 9085 0.0 22.124731 2 GAGTACT 35100 0.0 20.687809 12-13 CAGAGTA 54880 0.0 19.730085 10-11 AGAGTAC 51750 0.0 19.135307 10-11 TACATGG 35845 0.0 18.85529 2 ACGGTAC 1060 0.0 18.598679 3 GTACTTT 39150 0.0 18.48212 14-15 GTACATG 37555 0.0 18.361933 1 >>END_MODULE