##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140170_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15014092 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.81322107257635 32.0 30.0 33.0 18.0 33.0 2 31.36309868089259 33.0 32.0 33.0 27.0 34.0 3 31.71789209763734 33.0 31.0 33.0 29.0 34.0 4 31.775891276009233 33.0 32.0 33.0 29.0 34.0 5 32.15418854500159 33.0 33.0 34.0 31.0 34.0 6 35.76808554256894 38.0 36.0 38.0 31.0 38.0 7 36.02938932304398 38.0 36.0 38.0 32.0 38.0 8 36.316506119717396 38.0 37.0 38.0 33.0 38.0 9 36.610400615634966 38.0 38.0 38.0 34.0 38.0 10-11 36.71550484038595 38.0 38.0 38.0 34.0 38.0 12-13 36.76918554248901 38.0 38.0 38.0 34.0 38.0 14-15 36.77517335047634 38.0 38.0 38.0 34.5 38.0 16-17 36.761097174574395 38.0 38.0 38.0 34.0 38.0 18-19 36.771327463558904 38.0 38.0 38.0 35.0 38.0 20-21 36.77418484639853 38.0 38.0 38.0 35.0 38.0 22-23 36.782404763257745 38.0 38.0 38.0 35.0 38.0 24-25 36.77551847262116 38.0 38.0 38.0 35.0 38.0 26-27 36.73041761712021 38.0 38.0 38.0 34.0 38.0 28-29 36.70934448534684 38.0 38.0 38.0 34.0 38.0 30-31 36.69910781323293 38.0 38.0 38.0 34.0 38.0 32-33 36.68110801181811 38.0 38.0 38.0 34.0 38.0 34-35 36.646329821993675 38.0 38.0 38.0 34.0 38.0 36-37 36.61647471795544 38.0 38.0 38.0 34.0 38.0 38-39 36.602942363921535 38.0 38.0 38.0 34.0 38.0 40-41 36.58951845414628 38.0 38.0 38.0 34.0 38.0 42-43 36.54675728402351 38.0 38.0 38.0 34.0 38.0 44-45 36.47614772891852 38.0 38.0 38.0 34.0 38.0 46-47 36.423604881875086 38.0 38.0 38.0 34.0 38.0 48-49 36.3846934901635 38.0 38.0 38.0 34.0 38.0 50-51 36.36971631927687 38.0 38.0 38.0 34.0 38.0 52-53 36.332399699534975 38.0 38.0 38.0 33.5 38.0 54-55 36.30206484826571 38.0 38.0 38.0 33.0 38.0 56-57 36.273699028339436 38.0 38.0 38.0 33.0 38.0 58-59 36.25006258906423 38.0 37.5 38.0 33.0 38.0 60-61 36.25110163668133 38.0 37.0 38.0 33.0 38.0 62-63 36.23653047862476 38.0 37.0 38.0 33.0 38.0 64-65 36.226266451551936 38.0 37.0 38.0 33.0 38.0 66-67 36.19979690526257 38.0 37.0 38.0 33.0 38.0 68-69 36.19315783046137 38.0 37.0 38.0 33.0 38.0 70-71 36.18053768040431 38.0 37.0 38.0 33.0 38.0 72-73 36.16195156207836 38.0 37.0 38.0 33.0 38.0 74-75 36.15087725795281 38.0 37.0 38.0 33.0 38.0 76-77 36.132594133937474 38.0 37.0 38.0 33.0 38.0 78-79 36.145204563689944 38.0 37.0 38.0 33.0 38.0 80-81 36.10138608128038 38.0 37.0 38.0 33.0 38.0 82-83 36.10240972933161 38.0 37.0 38.0 33.0 38.0 84-85 36.08827522517883 38.0 37.0 38.0 33.0 38.0 86-87 36.047740797304826 38.0 37.0 38.0 32.5 38.0 88-89 36.03887764268376 38.0 37.0 38.0 32.5 38.0 90-91 36.04112141035157 38.0 37.0 38.0 32.5 38.0 92-93 36.02430452007215 38.0 37.0 38.0 32.5 38.0 94-95 36.001074951997566 38.0 37.0 38.0 32.0 38.0 96-97 36.012453611190224 38.0 37.0 38.0 32.5 38.0 98-99 36.04774974441534 38.0 37.0 38.0 33.0 38.0 100-101 35.42956183589659 38.0 35.5 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 20.0 20 112.0 21 800.0 22 3693.0 23 10909.0 24 24624.0 25 46339.0 26 75554.0 27 113726.0 28 160802.0 29 215748.0 30 276417.0 31 346509.0 32 437700.0 33 564351.0 34 769372.0 35 1168576.0 36 2369597.0 37 8429236.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.64090589027961 19.182938268927618 14.717193687104087 25.45896215368868 2 14.085274021232852 20.522626343304676 43.72311692242195 21.66898271304052 3 18.754811553616776 26.52401443995614 29.26472999815764 25.456444008269447 4 12.424227852073905 19.09776495308541 38.47593980375237 30.002067391088318 5 14.194451366835336 37.31227919609053 35.01881039415872 13.474459042915418 6 29.652995332651482 38.16600431114982 18.778658076692217 13.40234227950648 7 26.438382021370323 32.99197846929405 22.654157174473156 17.915482334862475 8 23.712536195995067 37.61580786903397 20.793911479961626 17.877744455009335 9 24.95458266806944 17.886929159618845 21.53164507051109 35.626843101800624 10-11 24.044528180617036 27.36967198306257 28.427305355720083 20.158494480600304 12-13 24.939211192646844 24.676164623300213 28.926370838183367 21.458253345869576 14-15 21.915284653910472 26.092350439840118 27.01886334518265 24.97350156106676 16-17 21.247065756623844 29.29397595272495 27.635457408946206 21.823500881705 18-19 21.134941094006884 28.206474290952794 29.809318472272583 20.849266142767743 20-21 22.052898102007294 27.25925512972757 29.831177418068926 20.856669350196206 22-23 21.693452553323127 27.168959755443534 29.731380014000557 21.406207677232782 24-25 21.439112451660964 27.28063549488559 29.855748480540043 21.424503572913395 26-27 21.427975590156294 27.46972905276036 29.735317058993743 21.366978298089602 28-29 21.313151039280058 27.541549707183332 29.76963911216213 21.375660141374482 30-31 21.64425988128545 27.34529084591481 29.711843379753976 21.298605893045764 32-33 21.421274237179265 27.465389565160958 29.67775592309547 21.435580274564302 34-35 21.557987388431034 27.52838574530232 29.637126775983013 21.276500090283637 36-37 21.537612135819685 27.45716696048631 29.62388856038038 21.38133234331363 38-39 21.36394136544849 27.603794999492216 29.6714460487507 21.3608175863086 40-41 21.70721430849599 27.533307453162603 29.455634692817885 21.30384354552352 42-43 21.579687371621066 27.54528866431134 29.32232013255553 21.552703831512062 44-45 21.66195849743678 27.725984102352324 29.129075683813184 21.482981716397713 46-47 21.678539286178292 27.715980263141184 28.868857390291048 21.73662306038948 48-49 21.660591294418328 27.75327962329345 28.877549379791073 21.708579702497147 50-51 21.62302936610366 27.953485677721552 28.69429727167212 21.729187684502673 52-53 21.769690471433513 27.896987661168428 28.59365194731682 21.73966992008124 54-55 21.744213581926914 27.82053056861244 28.655780070734053 21.779475778726592 56-57 21.79869129717141 27.91263255477423 28.56682117258688 21.721854975467476 58-59 21.75331702155428 27.972503383052572 28.616604356409738 21.657575238983416 60-61 21.790553611923137 27.92255183282215 28.640912198410568 21.645982356844147 62-63 21.727226274989963 27.959607441602486 28.63823410439711 21.67493217901044 64-65 21.688864794974155 27.923269757925716 28.642456189613995 21.74540925748613 66-67 21.781909726506072 27.98275221327602 28.476816107288382 21.758521952929527 68-69 21.790742832902374 27.90886602138437 28.54798424483548 21.752406900877773 70-71 21.743714053579595 27.685588847172056 28.60856311696964 21.962133982278704 72-73 21.78184996743604 27.739471647329694 28.626023596686277 21.85265478854798 74-75 21.65524897196712 27.890376881154715 28.552641234226346 21.90173291265182 76-77 21.77686523026919 27.836973466213564 28.469096068884497 21.91706523463275 78-79 21.72225949793255 27.92504262458739 28.428510720525153 21.9241871569549 80-81 21.75045336901491 27.9035901809361 28.409771942934103 21.936184507114888 82-83 21.820075350322025 27.900329035512478 28.503509552971547 21.776086061193954 84-85 21.990451288587547 27.87219301413159 28.360051925554963 21.777303771725894 86-87 21.73652573873453 27.944292684910053 28.44235918886147 21.87682238749394 88-89 21.868838015960513 27.962313860056405 28.36920445780871 21.79964366617437 90-91 21.923644403970226 27.927772937157247 28.37634755179262 21.77223510707991 92-93 21.880870141469824 27.952865748274036 28.38781902716111 21.77844508309503 94-95 21.75291970426055 28.09909009864866 28.350457446149395 21.797532750941397 96-97 21.75987905255687 28.10718009556824 28.387743693854006 21.745197158020883 98-99 22.04699824437087 28.617594917925608 28.449628844305092 20.88577799339843 100-101 22.626002051800995 31.170637880141218 25.838096859757755 20.365263208300032 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3741.0 1 3513.0 2 4350.5 3 5724.0 4 7181.0 5 10681.0 6 14178.5 7 18431.0 8 23438.0 9 25691.5 10 24329.0 11 22216.0 12 23448.5 13 29351.5 14 41970.5 15 57821.5 16 70800.5 17 79346.0 18 81125.5 19 76496.0 20 69491.5 21 63014.0 22 61108.0 23 66668.5 24 79453.5 25 99654.0 26 127633.0 27 159085.0 28 191661.0 29 226137.5 30 259952.0 31 294752.0 32 332406.5 33 370804.0 34 408010.0 35 443072.0 36 480408.0 37 513741.5 38 534452.5 39 549855.5 40 572457.5 41 594172.0 42 604783.5 43 613727.5 44 623590.0 45 628739.5 46 627461.0 47 623623.5 48 616976.0 49 602628.5 50 582224.5 51 556647.0 52 525444.5 53 493950.5 54 461093.0 55 425136.0 56 388126.0 57 348587.0 58 309010.0 59 267836.5 60 223498.0 61 179211.5 62 137692.5 63 104405.0 64 78854.0 65 58440.5 66 42929.5 67 32358.5 68 24204.0 69 17488.0 70 12784.0 71 9315.5 72 6654.0 73 4641.5 74 3186.0 75 2123.0 76 1361.5 77 832.0 78 512.0 79 314.0 80 201.5 81 133.0 82 91.0 83 63.0 84 46.0 85 34.0 86 24.0 87 16.5 88 11.5 89 8.0 90 7.0 91 6.0 92 4.5 93 3.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.004995307075512791 4 0.0 5 0.042839753479597696 6 0.0 7 0.0 8 0.0 9 0.0 10-11 2.997184245307675E-5 12-13 1.3653839339734965E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.4846805382665375E-5 46-47 0.0010197358918843293 48-49 2.8083917835724106E-5 50-51 1.5216509700701871E-4 52-53 0.001372328859897699 54-55 7.646905399702489E-4 56-57 0.0039033454962881316 58-59 0.008787561218034746 60-61 0.010854440374019093 62-63 0.0063159395198967285 64-65 0.008312804525987986 66-67 0.005268934310615269 68-69 0.0026118471335983724 70-71 0.004481818812476602 72-73 0.002917589797230987 74-75 0.0013717178970177333 76-77 0.001918357156669202 78-79 6.983360477179369E-4 80-81 4.1270744659665815E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.7448147191888807E-4 94-95 2.710593425055512E-4 96-97 8.713282933671746E-5 98-99 4.94173980778519E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 163.0 20-21 661.0 22-23 1427.0 24-25 2205.0 26-27 4292.0 28-29 9284.0 30-31 26122.0 32-33 34200.0 34-35 47343.0 36-37 75692.0 38-39 91892.0 40-41 90807.0 42-43 105855.0 44-45 125503.0 46-47 125680.0 48-49 116859.0 50-51 104262.0 52-53 99096.0 54-55 104123.0 56-57 108670.0 58-59 109940.0 60-61 106867.0 62-63 102066.0 64-65 107571.0 66-67 113718.0 68-69 117518.0 70-71 116270.0 72-73 108622.0 74-75 109490.0 76-77 116361.0 78-79 121686.0 80-81 123901.0 82-83 115837.0 84-85 114861.0 86-87 118969.0 88-89 125646.0 90-91 130099.0 92-93 127196.0 94-95 134932.0 96-97 221995.0 98-99 1248026.0 100-101 1.0048385E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.46371788838933 #Duplication Level Percentage of deduplicated Percentage of total 1 87.79117781461963 71.51795742579597 2 8.121079917418896 13.23146726683354 3 2.172463178270292 5.309307824325741 4 0.8353296332418507 2.721962303449034 5 0.41247459982125395 1.6800857217982454 6 0.21406622102067563 1.0463178143197147 7 0.12634187151893614 0.720459500523682 8 0.08073070162950709 0.5261298481982318 9 0.055863338713678705 0.40957517387471937 >10 0.18480829001301857 2.2785057247437357 >50 0.004238465076802787 0.23247032356127922 >100 0.0013029745967317332 0.17632463599557038 >500 6.150091354787728E-5 0.037512583641038225 >1k 6.149314529469685E-5 0.11192385293942425 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.660409434017056E-6 0.0 0.0 0.0 3 0.0 6.660409434017056E-6 0.0 0.0 0.0 4 0.0 3.9962456604102335E-5 0.0 0.0 0.0 5 6.660409434017056E-6 4.662286603811939E-5 0.0 6.660409434017056E-6 0.0 6 5.3283275472136446E-5 4.662286603811939E-5 0.0 6.660409434017056E-6 0.0 7 5.3283275472136446E-5 4.662286603811939E-5 0.0 6.660409434017056E-6 0.0 8 5.99436849061535E-5 5.99436849061535E-5 0.0 6.660409434017056E-6 0.0 9 6.660409434017055E-5 1.5318941698239227E-4 0.0 3.3302047170085275E-5 0.0 10-11 6.993429905717907E-5 1.5318941698239227E-4 0.0 4.329266132111086E-5 6.660409434017056E-6 12-13 7.32645037741876E-5 1.5318941698239227E-4 0.0 5.3283275472136446E-5 6.660409434017056E-6 14-15 7.992491320820467E-5 2.2312371603957137E-4 0.0 6.993429905717908E-5 6.660409434017056E-6 16-17 9.657593679324731E-5 2.264539207565799E-4 0.0 8.658532264222172E-5 6.660409434017056E-6 18-19 9.990614151025583E-5 2.3311433019059696E-4 0.0 9.324573207623877E-5 6.660409434017056E-6 20-21 1.0989675566128141E-4 2.4310494434162251E-4 0.0 1.0656655094427289E-4 6.660409434017056E-6 22-23 1.1655716509529848E-4 2.830674009457249E-4 0.0 1.3653839339734965E-4 6.660409434017056E-6 24-25 1.19887369812307E-4 3.1636944811581013E-4 0.0 1.6651023585042638E-4 9.990614151025584E-6 26-27 1.2321757452931552E-4 3.3968088113486985E-4 0.0 2.0647269245452872E-4 1.3320818868034112E-5 28-29 1.2654777924632406E-4 3.3968088113486985E-4 0.0 5.095213217023047E-4 1.3320818868034112E-5 30-31 1.2654777924632406E-4 3.6632251887093806E-4 0.0 0.0014619598707667437 1.3320818868034112E-5 32-33 1.2654777924632406E-4 3.6632251887093806E-4 0.0 0.0034933847481419455 1.3320818868034112E-5 34-35 1.2654777924632406E-4 4.529078415131597E-4 0.0 0.0060942746321256056 1.3320818868034112E-5 36-37 1.2654777924632406E-4 5.328327547213644E-4 0.0 0.010440191787821735 1.3320818868034112E-5 38-39 1.2654777924632406E-4 5.394931641553815E-4 0.0 0.01712391265485785 1.3320818868034112E-5 40-41 1.332081886803411E-4 6.127576679295691E-4 0.0 0.02441373078038952 1.3320818868034112E-5 42-43 1.5318941698239227E-4 6.327388962316203E-4 0.0 0.03134388679648426 1.3320818868034112E-5 44-45 1.598498264164093E-4 7.359752424588846E-4 0.0 0.03929641566070063 1.3320818868034112E-5 46-47 1.6651023585042638E-4 7.925887226480296E-4 0.0 0.047641908681524 1.6651023585042638E-5 48-49 1.6651023585042638E-4 7.925887226480296E-4 0.0 0.05627046910329309 1.9981228302051167E-5 50-51 1.8649146415247755E-4 8.891646594412769E-4 0.0 0.06512215324110177 1.9981228302051167E-5 52-53 1.8649146415247755E-4 8.991552735923025E-4 0.0 0.07376070427702189 1.9981228302051167E-5 54-55 1.8649146415247755E-4 9.158062971773451E-4 0.0 0.08236262306105491 1.9981228302051167E-5 56-57 1.8982166886948607E-4 9.457781396304219E-4 0.0 0.08839029359884035 1.9981228302051167E-5 58-59 1.9981228302051165E-4 9.59098958498456E-4 0.0 0.09363869623284579 1.9981228302051167E-5 60-61 2.0980289717153724E-4 9.724197773664901E-4 0.0 0.09864066371779259 1.9981228302051167E-5 62-63 2.1313310188854578E-4 9.857405962345241E-4 0.0 0.10350609280934206 1.9981228302051167E-5 64-65 2.2312371603957137E-4 0.0011122883754808484 0.0 0.1084114843574956 1.9981228302051167E-5 66-67 2.3311433019059693E-4 0.0011122883754808484 0.0 0.11349337675565063 1.9981228302051167E-5 68-69 2.3311433019059693E-4 0.0011222789896318738 0.0 0.11879506266512821 1.9981228302051167E-5 70-71 2.3311433019059693E-4 0.0011289393990658908 0.0 0.12384032281139612 1.9981228302051167E-5 72-73 2.3311433019059693E-4 0.0011322696037828995 0.0 0.12784322888124036 1.9981228302051167E-5 74-75 2.39774739624614E-4 0.0011389300132169165 0.0 0.1309702911105114 1.9981228302051167E-5 76-77 2.4643514905863103E-4 0.0011788924698210189 0.0 0.13374768184449648 1.9981228302051167E-5 78-79 2.497653537756396E-4 0.001205534107557087 0.0 0.13630527906715906 1.9981228302051167E-5 80-81 2.530955584926481E-4 0.001205534107557087 0.0 0.13764069115867947 1.9981228302051167E-5 82-83 2.564257632096566E-4 0.001205534107557087 0.0 0.1381235708426457 1.9981228302051167E-5 84-85 2.664163773606822E-4 0.0012088643122740955 0.0 0.1385564974558568 1.9981228302051167E-5 86-87 2.664163773606822E-4 0.0012188549264251212 0.0 0.1387196774869902 1.9981228302051167E-5 88-89 2.730767867946993E-4 0.0012721382018972575 0.0 0.13880959301434945 1.9981228302051167E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21805 0.0 51.55115 1 GTATCAA 41130 0.0 39.02298 1 ATCAACG 49700 0.0 31.824146 3 TCAACGC 49955 0.0 31.660326 4 TATCAAC 51455 0.0 31.058113 2 CAACGCA 51365 0.0 30.774492 5 AACGCAG 52840 0.0 29.943497 6 GTGGTAT 10750 0.0 28.042229 1 TGGTATC 10440 0.0 27.176378 2 ACGCAGA 60030 0.0 26.321142 7 CGCAGAG 60930 0.0 25.911064 8 GCAGAGT 69625 0.0 22.687624 9 GAGTACT 44665 0.0 20.634981 12-13 TACATGG 43660 0.0 19.683502 2 CAGAGTA 68585 0.0 19.615353 10-11 GTACATG 44750 0.0 19.513334 1 AGAGTAC 64195 0.0 19.061087 10-11 ACATGGG 43735 0.0 18.868502 3 GTACTTT 49800 0.0 18.512032 14-15 AGTACTT 48245 0.0 17.589447 12-13 >>END_MODULE