##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140169_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10324630 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.963561212363057 18.0 18.0 32.0 18.0 33.0 2 28.35230860573212 31.0 27.0 32.0 18.0 33.0 3 30.171589877797075 31.0 29.0 33.0 27.0 33.0 4 30.71103458429019 32.0 31.0 33.0 27.0 33.0 5 31.553006354707144 33.0 32.0 33.0 30.0 33.0 6 35.78800024795078 37.0 36.0 38.0 31.0 38.0 7 36.09872576547537 38.0 37.0 38.0 33.0 38.0 8 36.59391658587281 38.0 37.0 38.0 34.0 38.0 9 36.75257389368917 38.0 38.0 38.0 34.0 38.0 10-11 36.82615464186126 38.0 38.0 38.0 35.0 38.0 12-13 36.859670903460945 38.0 38.0 38.0 35.0 38.0 14-15 36.88136790374086 38.0 38.0 38.0 35.0 38.0 16-17 36.8736698554815 38.0 38.0 38.0 35.0 38.0 18-19 36.88104794070102 38.0 38.0 38.0 35.0 38.0 20-21 36.88202303813398 38.0 38.0 38.0 35.0 38.0 22-23 36.89116674645385 38.0 38.0 38.0 35.0 38.0 24-25 36.88994323072248 38.0 38.0 38.0 35.0 38.0 26-27 36.842054515159425 38.0 38.0 38.0 35.0 38.0 28-29 36.82176999326738 38.0 38.0 38.0 35.0 38.0 30-31 36.8131821246798 38.0 38.0 38.0 35.0 38.0 32-33 36.794910598083405 38.0 38.0 38.0 35.0 38.0 34-35 36.76702678997644 38.0 38.0 38.0 35.0 38.0 36-37 36.74272611690576 38.0 38.0 38.0 35.0 38.0 38-39 36.73117933738291 38.0 38.0 38.0 34.5 38.0 40-41 36.720465914204354 38.0 38.0 38.0 34.5 38.0 42-43 36.67637143656529 38.0 38.0 38.0 34.0 38.0 44-45 36.615055146518515 38.0 38.0 38.0 34.0 38.0 46-47 36.57234045373784 38.0 38.0 38.0 34.0 38.0 48-49 36.541308088213306 38.0 38.0 38.0 34.0 38.0 50-51 36.52901981609028 38.0 38.0 38.0 34.0 38.0 52-53 36.492971189754 38.0 38.0 38.0 34.0 38.0 54-55 36.464515876568115 38.0 38.0 38.0 34.0 38.0 56-57 36.43698743791144 38.0 38.0 38.0 34.0 38.0 58-59 36.41522111155217 38.0 38.0 38.0 34.0 38.0 60-61 36.41478405580144 38.0 38.0 38.0 34.0 38.0 62-63 36.39990539010479 38.0 38.0 38.0 34.0 38.0 64-65 36.393406364417594 38.0 38.0 38.0 34.0 38.0 66-67 36.3664319009931 38.0 38.0 38.0 34.0 38.0 68-69 36.36306027827018 38.0 38.0 38.0 34.0 38.0 70-71 36.350595880799645 38.0 38.0 38.0 34.0 38.0 72-73 36.332013467029114 38.0 38.0 38.0 33.0 38.0 74-75 36.32374114656286 38.0 38.0 38.0 33.0 38.0 76-77 36.29975051945274 38.0 37.0 38.0 33.0 38.0 78-79 36.310161680907484 38.0 37.0 38.0 33.0 38.0 80-81 36.270275985087295 38.0 37.0 38.0 33.0 38.0 82-83 36.26821741627729 38.0 37.0 38.0 33.0 38.0 84-85 36.254419343109916 38.0 37.0 38.0 33.0 38.0 86-87 36.21927322197125 38.0 37.0 38.0 33.0 38.0 88-89 36.21040396949731 38.0 37.0 38.0 33.0 38.0 90-91 36.213842701624216 38.0 37.0 38.0 33.0 38.0 92-93 36.194684285760566 38.0 37.0 38.0 33.0 38.0 94-95 36.17254993750949 38.0 37.0 38.0 33.0 38.0 96-97 36.176629460478054 38.0 37.0 38.0 33.0 38.0 98-99 36.21002752760445 38.0 37.0 38.0 33.0 38.0 100-101 35.626047577088045 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 24.0 19 50.0 20 110.0 21 475.0 22 2019.0 23 6118.0 24 14408.0 25 27210.0 26 45501.0 27 69626.0 28 99627.0 29 134094.0 30 172759.0 31 220714.0 32 281493.0 33 372225.0 34 523862.0 35 844940.0 36 2009777.0 37 5499592.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.610132275926595 24.823204318217698 14.169650631548055 23.39701277430765 2 14.627168237505847 20.749779895260172 39.435863561212365 25.187188306021618 3 18.00608587994877 25.17942749412886 31.170162295943545 25.64432432997883 4 13.787041278961087 18.007889871114024 38.0779456503526 30.127123199572285 5 14.195153566825097 36.548585593832 34.86479156632144 14.391469273021459 6 30.38080783524446 37.928923360934 18.13465470433323 13.555614099488311 7 26.68611853402979 32.74366248475732 22.742325875116105 17.82789310609678 8 24.248433115762985 37.30751610469334 20.46895627252502 17.975094507018653 9 25.169880179725567 17.279437616650668 21.41948912454974 36.13119307907402 10-11 24.37871251251316 26.96469417761617 28.323798769127624 20.33279454074304 12-13 24.98706005394098 24.29816289571198 28.769262940285056 21.94551411006199 14-15 22.188589052449245 25.708647739303757 26.408934403357254 25.693828804889744 16-17 21.802011306942717 28.81302768234794 27.185589217240715 22.19937179346863 18-19 21.832884083981703 27.964561441911233 28.878628096115794 21.32392637799127 20-21 22.688888427202762 27.041599066373788 28.83519156350282 21.43432094292063 22-23 22.3655089613876 26.871638601842402 28.727762406389374 22.035090030380623 24-25 22.08539604260115 27.067497029747088 28.842451392228856 22.0046555354229 26-27 22.07456838136357 27.178302807127565 28.72853411577974 22.018594695729128 28-29 22.050681381990792 27.2255221240842 28.768444772639022 21.95535172128598 30-31 22.286555450323757 27.079656309762747 28.698602339818862 21.93518590009463 32-33 22.099537062454736 27.207956333973083 28.628238150519756 22.064268453052424 34-35 22.18496973236552 27.249939293300972 28.614707706375746 21.95038326795776 36-37 22.25033893605627 27.115563864526454 28.61508374075144 22.01901345866583 38-39 22.040395927594584 27.27528722989688 28.682143384822538 22.002173457686 40-41 22.345771683928746 27.171046552023192 28.500874922848162 21.982306841199897 42-43 22.19486736740507 27.265318838856768 28.328603122888563 22.2112106708496 44-45 22.225676550296097 27.320413723448944 28.25617717658225 22.197732549672715 46-47 22.306512265046162 27.28199520015003 28.07948589525877 22.33200663954504 48-49 22.262031202010053 27.406813036437566 28.061871190135907 22.269284571416474 50-51 22.24378311384202 27.470919721784494 27.961701825177688 22.323595339195805 52-53 22.41526240810689 27.441921570842997 27.818717280258277 22.32409874079184 54-55 22.4007759910966 27.317723487785166 27.897367464134533 22.3841330569837 56-57 22.351576554556633 27.412931032136544 27.917150886187148 22.318341527119678 58-59 22.29640809373639 27.422528643730598 27.956986356624157 22.324076905908854 60-61 22.352289728571535 27.362575082659795 27.99955667539059 22.28557851337808 62-63 22.351021973728155 27.460216005515946 27.97051487550305 22.218247145252846 64-65 22.244832162472132 27.4243274911231 27.97204178246452 22.358798563940244 66-67 22.29838247165783 27.5535811568624 27.76907349016069 22.37896288131908 68-69 22.300636179039195 27.461915168442797 27.836722280868464 22.400726371649547 70-71 22.265349675563552 27.251575758593066 27.858772630902624 22.624301934940753 72-73 22.348695898700125 27.30231664841472 27.775365549474557 22.573621903410604 74-75 22.191903078467416 27.374322999046917 27.81082282554186 22.6229510969438 76-77 22.403165380708 27.35987653067256 27.67670247507006 22.56025561354938 78-79 22.369147698714727 27.42759819056509 27.584611186903135 22.618642923817045 80-81 22.412712823857472 27.378132382912973 27.569071675543494 22.640083117686057 82-83 22.408398754840537 27.409923674322208 27.655639658596197 22.52603791224106 84-85 22.540086694757775 27.426748740654883 27.568082037220886 22.465082527366462 86-87 22.436285146755427 27.450598515315573 27.5689348717976 22.544181466131402 88-89 22.442185896230992 27.465670078560773 27.58430011448792 22.507843910720315 90-91 22.477983663859664 27.547396207131484 27.57060920602022 22.404010922988633 92-93 22.577666161818975 27.49484525774205 27.535736316185343 22.391752264253636 94-95 22.454629584834755 27.58352697723559 27.598034273800252 22.363809164129396 96-97 22.426380466648943 27.605045088620194 27.6085740602121 22.36000038451877 98-99 22.717406866946234 28.097419419157614 27.715682292600757 21.469491421295395 100-101 23.280988554440224 30.62915556881115 25.02805941664839 21.061796460100236 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2532.0 1 2434.0 2 2674.5 3 3154.0 4 3756.5 5 4925.0 6 6431.5 7 8571.5 8 10721.5 9 12146.0 10 12215.5 11 11874.5 12 12981.5 13 16116.5 14 22898.0 15 31002.5 16 36811.5 17 39792.5 18 39778.0 19 37348.5 20 34127.5 21 31691.0 22 31939.5 23 36804.5 24 46130.0 25 60325.5 26 78864.0 27 100086.5 28 122096.0 29 144637.5 30 165799.5 31 187354.5 32 210424.0 33 234135.5 34 257364.0 35 278886.5 36 305233.5 37 327771.5 38 342479.5 39 356285.5 40 372169.5 41 386607.0 42 394909.0 43 402088.5 44 410231.5 45 417710.0 46 422751.0 47 425638.5 48 424538.5 49 421328.5 50 417655.0 51 408601.5 52 391240.0 53 369974.0 54 350421.5 55 328427.5 56 303015.5 57 275844.0 58 247055.5 59 216364.0 60 182643.5 61 150070.0 62 119342.5 63 92280.0 64 71080.5 65 55040.5 66 42975.5 67 32085.0 68 23383.5 69 17759.0 70 13110.0 71 9138.0 72 6378.0 73 4328.0 74 2807.0 75 1742.5 76 1076.0 77 686.5 78 450.5 79 269.5 80 162.0 81 105.5 82 72.0 83 48.5 84 35.0 85 25.5 86 18.0 87 15.0 88 12.5 89 9.0 90 6.0 91 3.0 92 2.0 93 2.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003912973152548808 4 0.0 5 0.038829478635069734 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.452836566540399E-5 12-13 1.1622692532323192E-4 14-15 9.685577110269325E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.007882908486249E-5 46-47 9.240299906809303E-4 48-49 2.545041249265056E-5 50-51 1.1283041875266177E-4 52-53 0.0014356276936093703 54-55 8.160272746461418E-4 56-57 0.003946176662478695 58-59 0.008681001651604047 60-61 0.010816290459686502 62-63 0.006140706335415445 64-65 0.007904340751004093 66-67 0.005397491515818024 68-69 0.002623915795797431 70-71 0.004287632324559807 72-73 0.00284503178917789 74-75 0.0014038067631237893 76-77 0.001894468221063619 78-79 6.778154673813369E-4 80-81 5.22180759135944E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.9751113746787512E-4 94-95 2.809064163395147E-4 96-97 1.0751335584663003E-4 98-99 5.549422899190881E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 94.0 20-21 356.0 22-23 772.0 24-25 1112.0 26-27 2649.0 28-29 6026.0 30-31 17357.0 32-33 22743.0 34-35 31620.0 36-37 50615.0 38-39 58415.0 40-41 60662.0 42-43 68159.0 44-45 81004.0 46-47 80748.0 48-49 75419.0 50-51 69519.0 52-53 61445.0 54-55 65492.0 56-57 65900.0 58-59 74120.0 60-61 73550.0 62-63 71149.0 64-65 76173.0 66-67 80567.0 68-69 82356.0 70-71 81749.0 72-73 76958.0 74-75 78578.0 76-77 83463.0 78-79 86172.0 80-81 87226.0 82-83 82524.0 84-85 82084.0 86-87 85133.0 88-89 88507.0 90-91 91005.0 92-93 90099.0 94-95 97318.0 96-97 156803.0 98-99 878167.0 100-101 6900822.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.75264656158168 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1165173532748 74.63744180687884 2 7.4500406510781465 12.479212430383276 3 1.8644827707352996 4.684660995526562 4 0.6853661070973319 2.296049013320399 5 0.3368502551059732 1.41060501800346 6 0.1737552789355136 0.8731478678937064 7 0.10729962512946205 0.6290639305760628 8 0.06704068441079365 0.44918677973629917 9 0.04249874483043845 0.32034441195851016 >10 0.1529208117593635 1.9396101562586765 >50 0.002681716967958877 0.1494608584270065 >100 4.8597044858346227E-4 0.07231015257480602 >500 2.001156483832105E-5 0.008949954901036736 >1k 4.001866142940017E-5 0.049956623561387054 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.874230844107731E-5 0.0 1.9371154220538654E-5 0.0 3 0.0 3.874230844107731E-5 0.0 1.9371154220538654E-5 0.0 4 0.0 7.748461688215462E-5 0.0 1.9371154220538654E-5 0.0 5 0.0 8.717019399242394E-5 0.0 1.9371154220538654E-5 0.0 6 7.748461688215462E-5 9.685577110269327E-5 0.0 1.9371154220538654E-5 0.0 7 7.748461688215462E-5 9.685577110269327E-5 0.0 1.9371154220538654E-5 0.0 8 7.748461688215462E-5 9.685577110269327E-5 0.0 1.9371154220538654E-5 0.0 9 7.748461688215462E-5 2.0339711931565587E-4 0.0 1.9371154220538654E-5 0.0 10-11 8.232740543728928E-5 2.130826964259252E-4 9.685577110269327E-6 2.905673133080798E-5 0.0 12-13 8.717019399242394E-5 2.372966392015985E-4 9.685577110269327E-6 2.905673133080798E-5 0.0 14-15 8.717019399242394E-5 3.0993846752861847E-4 9.685577110269327E-6 3.874230844107731E-5 0.0 16-17 1.1622692532323192E-4 3.341524103042918E-4 9.685577110269327E-6 3.874230844107731E-5 0.0 18-19 1.1622692532323192E-4 3.486807759696958E-4 9.685577110269327E-6 3.874230844107731E-5 0.0 20-21 1.2591250243350124E-4 4.0195145007617707E-4 9.685577110269327E-6 4.3585096996211976E-5 0.0 22-23 1.2591250243350124E-4 4.7943606695833164E-4 9.685577110269327E-6 4.842788555134664E-5 0.0 24-25 1.2591250243350124E-4 5.375495296199476E-4 9.685577110269327E-6 8.717019399242395E-5 0.0 26-27 1.2591250243350124E-4 5.61763472395621E-4 9.685577110269327E-6 1.452836566540399E-4 0.0 28-29 1.2591250243350124E-4 5.61763472395621E-4 9.685577110269327E-6 4.939644326237357E-4 0.0 30-31 1.2591250243350124E-4 6.876759748291222E-4 9.685577110269327E-6 0.0016804476286317281 0.0 32-33 1.307552909886359E-4 6.973615519393915E-4 9.685577110269327E-6 0.0045522212418265835 0.0 34-35 1.3559807954377056E-4 7.942173230420848E-4 9.685577110269327E-6 0.008334439103386755 0.0 36-37 1.3559807954377056E-4 8.862303055896434E-4 9.685577110269327E-6 0.013869746421905676 0.0 38-39 1.3559807954377056E-4 9.104442483653166E-4 9.685577110269327E-6 0.024218785564228452 0.0 40-41 1.3559807954377056E-4 0.0010557279050193566 9.685577110269327E-6 0.05812799102728136 0.0 42-43 1.3559807954377056E-4 0.00107994184779503 9.685577110269327E-6 0.06853030084371062 0.0 44-45 1.3559807954377056E-4 0.0012155399273388004 9.685577110269327E-6 0.0831409939145519 0.0 46-47 1.3559807954377056E-4 0.0013269240641068977 9.685577110269327E-6 0.10010528222318862 0.0 48-49 1.3559807954377056E-4 0.001336609641217167 9.685577110269327E-6 0.11601868541536113 0.0 50-51 1.5012644520917459E-4 0.0014431509894301297 9.685577110269327E-6 0.13170932033399746 0.0 52-53 1.5496923376430923E-4 0.0014528365665403991 9.685577110269327E-6 0.16092586368712486 0.0 54-55 1.5496923376430923E-4 0.001467364932205803 9.685577110269327E-6 0.23293812950197731 0.0 56-57 1.5496923376430923E-4 0.0014722077207609376 9.685577110269327E-6 0.3126068440224976 0.0 58-59 1.5496923376430923E-4 0.0014867360864263416 9.685577110269327E-6 0.3989828206918795 0.0 60-61 1.5496923376430923E-4 0.0015496923376430924 9.685577110269327E-6 0.41954045810842616 0.0 62-63 1.7434038798484788E-4 0.0015835918575290348 9.685577110269327E-6 0.43285328384649135 0.0 64-65 1.7434038798484788E-4 0.0016804476286317281 9.685577110269327E-6 0.44299408308094335 0.0 66-67 1.7434038798484788E-4 0.00172403272562794 9.685577110269327E-6 0.4497933582123524 0.0 68-69 1.7434038798484788E-4 0.0017385610912933442 9.685577110269327E-6 0.45630690881900854 0.0 70-71 1.7918317653998252E-4 0.0017627750340690174 9.685577110269327E-6 0.4626461190376798 0.0 72-73 1.9371154220538655E-4 0.0017918317653998254 9.685577110269327E-6 0.4669465152746394 0.0 74-75 1.9371154220538655E-4 0.0018596308051717107 9.685577110269327E-6 0.47051080765121844 0.0 76-77 2.130826964259252E-4 0.0019758577304949424 9.685577110269327E-6 0.47393950194825385 0.0 78-79 2.130826964259252E-4 0.00201460003893602 9.685577110269327E-6 0.476893602966886 0.0 80-81 2.130826964259252E-4 0.00201460003893602 9.685577110269327E-6 0.47830285443643017 0.0 82-83 2.130826964259252E-4 0.0020388139817116933 9.685577110269327E-6 0.4789324169485977 0.0 84-85 2.130826964259252E-4 0.0020630279244873667 9.685577110269327E-6 0.47944575253544197 0.0 86-87 2.2276827353619451E-4 0.002116298598593848 9.685577110269327E-6 0.47955229388365495 0.0 88-89 2.3245385064646384E-4 0.0022373683124722148 9.685577110269327E-6 0.47958135061498575 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12780 0.0 50.634647 1 GTATCAA 22880 0.0 35.06917 1 TCAACGC 27890 0.0 30.370132 4 ATCAACG 28205 0.0 29.970608 3 TATCAAC 28670 0.0 29.302977 2 CAACGCA 28930 0.0 29.218395 5 AACGCAG 29915 0.0 28.317572 6 ACGCAGA 35450 0.0 23.83505 7 CGCAGAG 36395 0.0 23.192348 8 GTGGTAT 6610 0.0 20.07843 1 GCAGAGT 42135 0.0 20.053461 9 GAGTACT 23650 0.0 19.953442 12-13 TGGTATC 6495 0.0 18.764498 2 CAGAGTA 41435 0.0 18.325815 10-11 GTACTTT 26080 0.0 17.994673 14-15 TATACCG 720 0.0 17.468615 5 AGAGTAC 38455 0.0 17.02897 10-11 TACATGG 29500 0.0 16.15792 2 GTACATG 29745 0.0 15.995671 1 ACATGGG 29765 0.0 15.766351 3 >>END_MODULE