##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140168_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8399720 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.688831056273305 18.0 18.0 32.0 18.0 33.0 2 27.99910889886806 30.0 25.0 32.0 18.0 33.0 3 29.979105493992655 31.0 29.0 33.0 25.0 33.0 4 30.593689432504892 32.0 31.0 33.0 27.0 33.0 5 31.466532098689004 33.0 32.0 33.0 28.0 33.0 6 35.72710257008567 37.0 36.0 38.0 31.0 38.0 7 36.053640597543726 38.0 37.0 38.0 33.0 38.0 8 36.56469096588934 38.0 37.0 38.0 34.0 38.0 9 36.727041972827664 38.0 38.0 38.0 34.0 38.0 10-11 36.80124414861448 38.0 38.0 38.0 34.5 38.0 12-13 36.829269963760694 38.0 38.0 38.0 35.0 38.0 14-15 36.85355380893649 38.0 38.0 38.0 35.0 38.0 16-17 36.842767377960215 38.0 38.0 38.0 35.0 38.0 18-19 36.852333649216874 38.0 38.0 38.0 35.0 38.0 20-21 36.85481894075818 38.0 38.0 38.0 35.0 38.0 22-23 36.860483946449094 38.0 38.0 38.0 35.0 38.0 24-25 36.854448153817046 38.0 38.0 38.0 35.0 38.0 26-27 36.8070335905967 38.0 38.0 38.0 35.0 38.0 28-29 36.78765587055547 38.0 38.0 38.0 35.0 38.0 30-31 36.77991382932774 38.0 38.0 38.0 35.0 38.0 32-33 36.759552251183166 38.0 38.0 38.0 35.0 38.0 34-35 36.726471353135395 38.0 38.0 38.0 34.5 38.0 36-37 36.7024737483684 38.0 38.0 38.0 34.0 38.0 38-39 36.67953272888955 38.0 38.0 38.0 34.0 38.0 40-41 36.68037393460607 38.0 38.0 38.0 34.0 38.0 42-43 36.637297535889 38.0 38.0 38.0 34.0 38.0 44-45 36.56757665720268 38.0 38.0 38.0 34.0 38.0 46-47 36.5149499481995 38.0 38.0 38.0 34.0 38.0 48-49 36.48062090887626 38.0 38.0 38.0 34.0 38.0 50-51 36.46434489137457 38.0 38.0 38.0 34.0 38.0 52-53 36.42502178511694 38.0 38.0 38.0 34.0 38.0 54-55 36.39255334453133 38.0 38.0 38.0 34.0 38.0 56-57 36.36249367587159 38.0 38.0 38.0 34.0 38.0 58-59 36.341045394351355 38.0 38.0 38.0 33.5 38.0 60-61 36.340111295652406 38.0 38.0 38.0 33.5 38.0 62-63 36.32361831564581 38.0 38.0 38.0 33.0 38.0 64-65 36.313545049955714 38.0 38.0 38.0 33.0 38.0 66-67 36.28284922870979 38.0 37.0 38.0 33.0 38.0 68-69 36.27610636337478 38.0 37.0 38.0 33.0 38.0 70-71 36.260845822171916 38.0 37.0 38.0 33.0 38.0 72-73 36.239457811482154 38.0 37.0 38.0 33.0 38.0 74-75 36.23235158647131 38.0 37.0 38.0 33.0 38.0 76-77 36.21221548091438 38.0 37.0 38.0 33.0 38.0 78-79 36.22319571798444 38.0 37.0 38.0 33.0 38.0 80-81 36.17898991340601 38.0 37.0 38.0 33.0 38.0 82-83 36.18475022217331 38.0 37.0 38.0 33.0 38.0 84-85 36.16953564449258 38.0 37.0 38.0 33.0 38.0 86-87 36.13401183941343 38.0 37.0 38.0 33.0 38.0 88-89 36.12951945697537 38.0 37.0 38.0 33.0 38.0 90-91 36.13073116782492 38.0 37.0 38.0 33.0 38.0 92-93 36.11421261895798 38.0 37.0 38.0 33.0 38.0 94-95 36.09284035717546 38.0 37.0 38.0 33.0 38.0 96-97 36.10109143330038 38.0 37.0 38.0 33.0 38.0 98-99 36.13505132042304 38.0 37.0 38.0 33.0 38.0 100-101 35.53696592682761 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 17.0 18 44.0 19 94.0 20 163.0 21 522.0 22 2013.0 23 5839.0 24 12874.0 25 24059.0 26 39517.0 27 59031.0 28 84427.0 29 114382.0 30 147276.0 31 187044.0 32 238100.0 33 313204.0 34 439357.0 35 713860.0 36 1706734.0 37 4311163.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 37.28679051206469 25.51618387279576 14.29866709842709 22.89835851671246 2 14.620784978546904 20.623794602677233 39.63802364840733 25.11739677036854 3 18.38786310719466 25.145664334132434 30.978392865816893 25.488079692856008 4 13.801983875652999 18.141771392379745 37.59356264256428 30.462682089402982 5 14.201976300166294 36.70543275914451 34.505875533653565 14.586715407035634 6 30.310879410266057 37.81996304638726 17.99074254856114 13.87841499478554 7 26.87214573819127 32.87252432223931 22.094665060263914 18.160664879305504 8 24.282237979361216 37.7743424780826 19.98879724562247 17.954622296933707 9 24.998416613887127 17.607265480277913 21.125882767520825 36.26843513831414 10-11 24.545447564701124 27.213745317774634 27.702821231449605 20.537985886074633 12-13 25.231915717100268 24.421119964722596 28.5238623090723 21.823102009104836 14-15 22.33636359307215 25.796681317948693 26.193188582476555 25.6737665065026 16-17 21.715408370755217 29.20341987590063 26.937195525565137 22.14397622777902 18-19 21.7475642045211 28.046089631559145 28.942345697237528 21.264000466682223 20-21 22.639164515853672 26.913798939155814 29.001771169053725 21.445265375936792 22-23 22.3857399755783 26.92496494857537 28.852656383645463 21.836638692200868 24-25 22.061411055180645 27.181699922305935 28.989078179279797 21.76781084323362 26-27 21.945403028613228 27.24322241875224 28.95158464358582 21.859789909048715 28-29 21.758180490956033 27.175047570430895 29.036133275237198 22.030638663375875 30-31 21.972314522779225 27.07892067250024 29.080201963740386 21.868562840980143 32-33 21.83131189510558 27.189304165046014 29.006296357409937 21.97308758243847 34-35 21.913515441789976 27.309959861760696 29.065855203067407 21.710669493381918 36-37 21.99982294808968 27.18869913931631 28.870818409843224 21.94065950275079 38-39 21.90685091353785 27.230885731412574 28.95996453951876 21.902298815530816 40-41 22.063693735334287 27.09188542326758 28.935475354314892 21.908945487083244 42-43 22.054457380914567 27.18116623703468 28.762837037127532 22.001539344923216 44-45 21.97990735585505 27.288014681235946 28.672891047136705 22.059186915772298 46-47 22.154249893186044 27.292072451177184 28.338991837491484 22.214685818145288 48-49 22.124836341446354 27.368560469144 28.286979738935113 22.219623450474533 50-51 22.045412123350975 27.480834884402228 28.26052566814355 22.213227324103247 52-53 22.145523857152657 27.454691805882476 28.255427048440623 22.14435728852425 54-55 22.100767949462067 27.477517972128005 28.174952596125753 22.246761482284167 56-57 22.201175431092686 27.57023568879946 28.067030896212568 22.161557983895285 58-59 22.02676496091078 27.667894352665968 28.2500563852202 22.055284301203056 60-61 22.192152800218455 27.725711057609924 28.110199747899355 21.97193639427226 62-63 22.082412571935357 27.878713573378157 28.03077923599357 22.00809461869292 64-65 22.03512623301704 27.857059573540855 27.996750908526675 22.111063284915435 66-67 22.099077441382768 27.825502288183362 27.95237688539825 22.123043385035622 68-69 22.088175061908917 27.653551867126524 28.016490714184965 22.241782356779595 70-71 22.05211358458829 27.484867001080538 28.112484996284792 22.350534418046372 72-73 22.089431375573295 27.504962603130327 28.057918759855333 22.347687261441042 74-75 21.997185247361898 27.526544427273024 28.066703323438034 22.40956700192704 76-77 22.175528151853243 27.462080957821865 27.997452559826858 22.364938330498035 78-79 22.084639771221084 27.49215996345039 27.972345687780848 22.45085457754768 80-81 22.131753987551207 27.555005747469057 27.934976127265855 22.37826413771388 82-83 22.164968410122583 27.500945803637876 28.011518153647643 22.322567632591902 84-85 22.23696396892219 27.601319826922776 27.905715712366113 22.25600049178892 86-87 22.22387561456264 27.60189999653958 27.899744726464892 22.274479662432885 88-89 22.211628743638556 27.549404837097562 27.895391984563368 22.343574434700514 90-91 22.222660974564167 27.55892869019562 27.92483570238448 22.29357463285573 92-93 22.206963648323256 27.510343670981523 27.961223087651515 22.321469593043698 94-95 22.105355616971373 27.622325716014988 28.003429268627794 22.268889398385845 96-97 22.119014771876675 27.675398765647643 27.937043738296058 22.26854272417963 98-99 22.393395135146797 28.217606759277853 27.995681848409575 21.39331625716578 100-101 23.011267459111544 30.70085694042568 25.36238136094659 20.92549423951619 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3368.0 1 3045.5 2 2690.5 3 2742.5 4 3154.5 5 4095.5 6 5586.0 7 8194.0 8 10771.0 9 12264.0 10 12178.0 11 11475.0 12 12340.0 13 15325.0 14 21675.5 15 29236.5 16 34338.5 17 36520.5 18 36257.0 19 33855.5 20 30487.0 21 27744.0 22 27259.5 23 30349.0 24 37218.0 25 47909.0 26 61414.0 27 76123.5 28 93193.5 29 112207.0 30 131161.0 31 151840.0 32 171436.0 33 190137.0 34 208749.0 35 225562.5 36 243893.5 37 261579.5 38 277321.5 39 290893.5 40 302310.5 41 313866.0 42 323069.0 43 331818.0 44 346325.5 45 357661.0 46 359300.5 47 358099.5 48 353780.0 49 346372.5 50 339139.5 51 331135.5 52 316624.0 53 297726.5 54 280438.5 55 261827.0 56 240914.5 57 216709.5 58 191072.5 59 165343.5 60 138993.0 61 114520.0 62 91600.0 63 71503.5 64 54775.5 65 41123.0 66 31030.0 67 23048.0 68 16604.5 69 12001.0 70 8534.5 71 5847.0 72 4055.0 73 2766.0 74 1821.5 75 1201.0 76 760.5 77 464.5 78 270.0 79 157.0 80 100.5 81 64.5 82 45.0 83 33.0 84 22.5 85 13.0 86 8.5 87 7.0 88 5.0 89 3.0 90 1.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003238203178201178 4 0.0 5 0.03715600043810984 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.7857738115080028E-5 12-13 1.0714642869048015E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 3.690853382510264E-5 46-47 9.301564151027637E-4 48-49 6.250385961333112E-6 50-51 7.556968204811976E-5 52-53 0.0013504117519551014 54-55 7.209662734529371E-4 56-57 0.0037322649162922356 58-59 0.009128202334788433 60-61 0.011278836170145351 62-63 0.006497717257976458 64-65 0.008361712176758252 66-67 0.005488694457934332 68-69 0.0027224558060851335 70-71 0.004769661090744605 72-73 0.003076424003193987 74-75 0.0013292633873092732 76-77 0.002094660793423994 78-79 7.821127020175972E-4 80-81 3.9838715804687284E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 7.46459505243654E-6 92-93 2.187814686965966E-4 94-95 2.821117513268783E-4 96-97 1.1577539295905002E-4 98-99 5.014417644637296E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 356.0 22-23 743.0 24-25 1032.0 26-27 2286.0 28-29 5118.0 30-31 13746.0 32-33 17334.0 34-35 24498.0 36-37 40272.0 38-39 48171.0 40-41 48037.0 42-43 54201.0 44-45 64278.0 46-47 64327.0 48-49 61480.0 50-51 55139.0 52-53 49017.0 54-55 52418.0 56-57 54013.0 58-59 58404.0 60-61 60023.0 62-63 57571.0 64-65 62967.0 66-67 67844.0 68-69 67773.0 70-71 72393.0 72-73 59502.0 74-75 60067.0 76-77 63646.0 78-79 67519.0 80-81 68082.0 82-83 64457.0 84-85 62665.0 86-87 64928.0 88-89 69301.0 90-91 71140.0 92-93 69364.0 94-95 74336.0 96-97 122887.0 98-99 711875.0 100-101 5666399.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.10646673346561 #Duplication Level Percentage of deduplicated Percentage of total 1 88.76113548906791 74.65385489235923 2 7.8459136721962945 13.197841545284414 3 1.901018975241325 4.7966396760246415 4 0.6990861733180819 2.3519067192001213 5 0.327415166279515 1.3768866395360069 6 0.16460564223345278 0.8306639383589184 7 0.09134209874352693 0.5377722832536165 8 0.05780102068656962 0.38891516988282604 9 0.03515083707581883 0.2660771438253743 >10 0.11411607040744695 1.439175442007823 >50 0.002065340437816051 0.10922514940888087 >100 3.495143121910149E-4 0.05104140085815062 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.1905158743386685E-5 0.0 1.1905158743386685E-5 0.0 5 0.0 1.1905158743386685E-5 0.0 1.1905158743386685E-5 0.0 6 0.0 1.1905158743386685E-5 0.0 1.1905158743386685E-5 0.0 7 0.0 1.1905158743386685E-5 0.0 1.1905158743386685E-5 0.0 8 0.0 1.1905158743386685E-5 0.0 1.1905158743386685E-5 1.1905158743386685E-5 9 1.1905158743386685E-5 7.143095246032011E-5 0.0 3.5715476230160056E-5 1.1905158743386685E-5 10-11 1.1905158743386685E-5 7.143095246032011E-5 0.0 3.5715476230160056E-5 1.1905158743386685E-5 12-13 1.1905158743386685E-5 7.143095246032011E-5 0.0 3.5715476230160056E-5 1.1905158743386685E-5 14-15 1.1905158743386685E-5 1.3690932554894688E-4 0.0 3.5715476230160056E-5 1.1905158743386685E-5 16-17 1.7857738115080028E-5 1.4286190492064022E-4 0.0 3.5715476230160056E-5 1.1905158743386685E-5 18-19 2.381031748677337E-5 1.7857738115080026E-4 0.0 4.16680556018534E-5 2.381031748677337E-5 20-21 2.381031748677337E-5 2.0834027800926698E-4 0.0 5.357321434524008E-5 2.381031748677337E-5 22-23 3.5715476230160056E-5 2.5000833361112036E-4 0.0 7.143095246032011E-5 2.9762896858466715E-5 24-25 4.762063497354674E-5 3.1548670669974714E-4 0.0 9.524126994709348E-5 4.762063497354674E-5 26-27 5.952579371693342E-5 3.333444448148272E-4 0.0 1.428619049206402E-4 4.762063497354674E-5 28-29 7.143095246032011E-5 3.333444448148272E-4 0.0 4.881115084788541E-4 4.762063497354674E-5 30-31 7.143095246032011E-5 3.9287023853176056E-4 0.0 0.0016786273828175227 5.357321434524008E-5 32-33 7.143095246032011E-5 4.1668055601853395E-4 0.0 0.004160852980813646 5.952579371693342E-5 34-35 7.143095246032011E-5 4.5239603224869404E-4 0.0 0.007678827389484412 5.952579371693342E-5 36-37 7.143095246032011E-5 4.762063497354674E-4 0.0 0.01312543751458382 5.952579371693342E-5 38-39 7.143095246032011E-5 4.881115084788541E-4 0.0 0.022893620263532595 6.547837308862676E-5 40-41 7.143095246032011E-5 5.476373021957875E-4 0.0 0.047799212354697536 7.143095246032011E-5 42-43 7.143095246032011E-5 5.654950403108676E-4 0.0 0.057341197087521965 7.738353183201345E-5 44-45 7.143095246032011E-5 6.42878572142881E-4 0.0 0.06953207964074992 8.33361112037068E-5 46-47 7.143095246032011E-5 7.024043658598143E-4 0.0 0.08372898144223856 8.33361112037068E-5 48-49 8.928869057540014E-5 7.083569452315077E-4 0.0 0.09657464772635278 8.33361112037068E-5 50-51 1.0714642869048016E-4 7.916930564352145E-4 0.0 0.10973580071716676 8.33361112037068E-5 52-53 1.0714642869048016E-4 8.035982151786012E-4 0.0 0.12958765292176405 8.928869057540014E-5 54-55 1.250041668055602E-4 8.095507945502945E-4 0.0 0.17135690237293624 9.524126994709348E-5 56-57 1.4881448429233355E-4 8.214559532936812E-4 0.0 0.21847156809988905 9.524126994709348E-5 58-59 1.6071964303572024E-4 8.214559532936812E-4 0.0 0.27058044791969255 9.524126994709348E-5 60-61 1.666722224074136E-4 8.750291676389213E-4 0.0 0.28956917611539434 9.524126994709348E-5 62-63 1.666722224074136E-4 8.869343263823079E-4 0.0 0.29985523326968044 1.0714642869048016E-4 64-65 1.666722224074136E-4 9.643178582143215E-4 0.0 0.3093912654231331 1.0714642869048016E-4 66-67 1.666722224074136E-4 9.821755963294015E-4 0.0 0.3150700261437286 1.0714642869048016E-4 68-69 1.666722224074136E-4 0.0010000333344444814 0.0 0.32032020114956217 1.0714642869048016E-4 70-71 1.666722224074136E-4 0.0010119384931878681 0.0 0.3260584876638745 1.0714642869048016E-4 72-73 1.7262480177910694E-4 0.001029796231302948 0.0 0.33004671584290907 1.3095674617725353E-4 74-75 1.7857738115080026E-4 0.001041701390046335 0.0 0.3333027767592253 1.3095674617725353E-4 76-77 1.7857738115080026E-4 0.0010536065487897215 0.0 0.3362373983894701 1.3095674617725353E-4 78-79 1.7857738115080026E-4 0.001059559128161415 0.0 0.3389220116861038 1.3095674617725353E-4 80-81 1.7857738115080026E-4 0.001059559128161415 0.0 0.34011848013981416 1.4881448429233355E-4 82-83 1.7857738115080026E-4 0.001059559128161415 0.0 0.3405768287514346 1.666722224074136E-4 84-85 1.7857738115080026E-4 0.0010774168662764949 0.0 0.3409161257756211 1.666722224074136E-4 86-87 1.7857738115080026E-4 0.0011428952393651218 0.0 0.3410827979980285 1.666722224074136E-4 88-89 1.7857738115080026E-4 0.0012500416680556019 0.0 0.34110660831551526 1.666722224074136E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12660 0.0 52.0502 1 GTATCAA 22880 0.0 34.666924 1 ATCAACG 27790 0.0 29.667313 3 TCAACGC 27985 0.0 29.521622 4 TATCAAC 28240 0.0 29.102278 2 CAACGCA 28850 0.0 28.591316 5 AACGCAG 30090 0.0 27.459536 6 TGGTATC 5520 0.0 25.65364 2 GTGGTAT 5860 0.0 24.016954 1 ACGCAGA 35525 0.0 23.27084 7 CGCAGAG 36165 0.0 22.859024 8 GAGTACT 20850 0.0 20.564125 12-13 GCAGAGT 41765 0.0 19.866776 9 CAGAGTA 40830 0.0 18.721292 10-11 GTACTTT 23260 0.0 18.321445 14-15 AGAGTAC 38230 0.0 16.814476 10-11 GTACATG 31735 0.0 16.370548 1 GGACCGA 1410 0.0 16.320496 6 TACATGG 31900 0.0 16.176937 2 CTTATAC 7770 0.0 16.044693 1 >>END_MODULE