##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140167_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8931297 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.409789977872194 18.0 18.0 32.0 18.0 33.0 2 27.82760588971568 29.0 25.0 32.0 18.0 33.0 3 29.85896426913135 31.0 29.0 33.0 25.0 33.0 4 30.513017762145857 32.0 31.0 33.0 27.0 33.0 5 31.465155956632056 33.0 32.0 33.0 28.0 33.0 6 35.73973119469658 37.0 36.0 38.0 31.0 38.0 7 36.070078287621605 38.0 37.0 38.0 33.0 38.0 8 36.58603996709549 38.0 37.0 38.0 34.0 38.0 9 36.74781187995428 38.0 38.0 38.0 34.0 38.0 10-11 36.82254335512524 38.0 38.0 38.0 35.0 38.0 12-13 36.85499216967032 38.0 38.0 38.0 35.0 38.0 14-15 36.87735784623443 38.0 38.0 38.0 35.0 38.0 16-17 36.86888970325363 38.0 38.0 38.0 35.0 38.0 18-19 36.87735219196047 38.0 38.0 38.0 35.0 38.0 20-21 36.879092159161075 38.0 38.0 38.0 35.0 38.0 22-23 36.885747542036526 38.0 38.0 38.0 35.0 38.0 24-25 36.88263392294735 38.0 38.0 38.0 35.0 38.0 26-27 36.83645560329238 38.0 38.0 38.0 35.0 38.0 28-29 36.81770245062363 38.0 38.0 38.0 35.0 38.0 30-31 36.8076804451728 38.0 38.0 38.0 35.0 38.0 32-33 36.79019510380394 38.0 38.0 38.0 35.0 38.0 34-35 36.76194941216568 38.0 38.0 38.0 35.0 38.0 36-37 36.73723911101543 38.0 38.0 38.0 34.5 38.0 38-39 36.7241211936909 38.0 38.0 38.0 34.5 38.0 40-41 36.7135785183452 38.0 38.0 38.0 34.0 38.0 42-43 36.668775149692365 38.0 38.0 38.0 34.0 38.0 44-45 36.606339421519905 38.0 38.0 38.0 34.0 38.0 46-47 36.56211049718254 38.0 38.0 38.0 34.0 38.0 48-49 36.53077954591083 38.0 38.0 38.0 34.0 38.0 50-51 36.51825687469763 38.0 38.0 38.0 34.0 38.0 52-53 36.48471971264788 38.0 38.0 38.0 34.0 38.0 54-55 36.456775794017496 38.0 38.0 38.0 34.0 38.0 56-57 36.4296566478769 38.0 38.0 38.0 34.0 38.0 58-59 36.4119129102759 38.0 38.0 38.0 34.0 38.0 60-61 36.41626097611112 38.0 38.0 38.0 34.0 38.0 62-63 36.40127430756257 38.0 38.0 38.0 34.0 38.0 64-65 36.39301588147494 38.0 38.0 38.0 34.0 38.0 66-67 36.36769508022763 38.0 38.0 38.0 34.0 38.0 68-69 36.359472179163916 38.0 38.0 38.0 34.0 38.0 70-71 36.348577106029694 38.0 38.0 38.0 34.0 38.0 72-73 36.33322942602106 38.0 38.0 38.0 33.0 38.0 74-75 36.325469355326575 38.0 38.0 38.0 33.0 38.0 76-77 36.30388396679611 38.0 37.0 38.0 33.0 38.0 78-79 36.318327870801696 38.0 37.0 38.0 33.0 38.0 80-81 36.27539845389306 38.0 37.0 38.0 33.0 38.0 82-83 36.27668745834661 38.0 37.0 38.0 33.0 38.0 84-85 36.263060313423736 38.0 37.0 38.0 33.0 38.0 86-87 36.2241389299481 38.0 37.0 38.0 33.0 38.0 88-89 36.21914453601035 38.0 37.0 38.0 33.0 38.0 90-91 36.21917864990358 38.0 37.0 38.0 33.0 38.0 92-93 36.20182737801946 38.0 37.0 38.0 33.0 38.0 94-95 36.18316545091704 38.0 37.0 38.0 33.0 38.0 96-97 36.19088878256427 38.0 37.0 38.0 33.0 38.0 98-99 36.22229549917213 38.0 37.0 38.0 33.0 38.0 100-101 35.62758702653875 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 29.0 19 45.0 20 116.0 21 468.0 22 1912.0 23 5693.0 24 12636.0 25 23828.0 26 39356.0 27 60136.0 28 86334.0 29 116194.0 30 150039.0 31 192727.0 32 244232.0 33 323209.0 34 459834.0 35 746831.0 36 1812249.0 37 4655425.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.33905579447196 26.36023636880511 14.191813350289436 23.108894486433492 2 14.405802427127885 20.858806957153032 39.60014989984097 25.13524071587811 3 17.86941792382395 25.39670827307503 31.364642868499775 25.369230934601244 4 13.66371535959447 18.23934418483676 38.302499625754244 29.794440829814526 5 14.020028756517512 36.6840041339314 35.01158089946274 14.284386210088348 6 30.00978469308545 38.32526227713623 18.203134438368807 13.46181859140951 7 26.369316796877317 32.94018774652774 22.963831568919947 17.72666388767499 8 23.9351686546758 37.73362368310001 20.52748889662946 17.803718765594738 9 24.92242728015875 17.542043445649607 21.50267760662309 36.03285166756855 10-11 24.132393551842867 27.198353967889986 28.47934946955067 20.189903010716474 12-13 24.82030583277705 24.587287877691967 28.967720885883626 21.62468540364736 14-15 22.014311023359763 25.986208945912338 26.66164835857547 25.337831672152433 16-17 21.481947134889815 29.14840924000176 27.427617735699528 21.942025889408896 18-19 21.495388631684737 28.25731245976928 29.220817536355582 21.0264813721904 20-21 22.330485604235914 27.27139383986488 29.268028876231693 21.13009167966751 22-23 22.060856233244436 27.156714080285617 29.11666672731818 21.665762959151767 24-25 21.793753357653546 27.351639654731734 29.20652295326258 21.648084034352138 26-27 21.69936021064952 27.483010468918838 29.122872112294896 21.694757208136743 28-29 21.67739286452501 27.50843186142899 29.15117861206043 21.662996661985567 30-31 21.898559468629724 27.345662098843736 29.131638196757553 21.624140235768984 32-33 21.791658437759015 27.455916084689107 29.00775325993934 21.74467221761254 34-35 21.856668069645956 27.49027087823219 29.044199478316933 21.608861573804923 36-37 21.87381857706299 27.395070994724062 29.03316387337079 21.697946554842154 38-39 21.738221587345997 27.527732921225656 29.078187863350145 21.655857628078202 40-41 21.991708052189114 27.409066700568125 28.913321998676224 21.685903248566536 42-43 21.80641637326916 27.559780011834263 28.7479744887538 21.88582912614278 44-45 21.894256451910003 27.618706527899356 28.651534774001135 21.83550224618951 46-47 21.977596192091127 27.604488239800297 28.436609478548498 21.98130608956008 48-49 21.960606617310326 27.7079188293909 28.407268791396767 21.924205761902005 50-51 21.969460293871524 27.757185062618923 28.295407471064493 21.977947172445063 52-53 22.046416383150046 27.75283251170438 28.1967673397456 22.00398376539998 54-55 22.038010177688545 27.731513946067075 28.205989646325598 22.02448622991879 56-57 22.03035608242381 27.78552358098772 28.21043765816398 21.973682678424492 58-59 21.961650535373842 27.8302835064858 28.260180336258745 21.947885621881618 60-61 22.06971537979136 27.747655065096353 28.28706093688974 21.895568618222544 62-63 22.058381436833706 27.750291886079108 28.305230808346753 21.886095868740433 64-65 21.993417422568832 27.681360066560135 28.321346425260874 22.00387608561016 66-67 22.070960139533014 27.765110768643613 28.139281522028803 22.02464756979457 68-69 22.012216231611905 27.725902429539584 28.205460089324667 22.05642124952384 70-71 21.986687824807515 27.554027372542627 28.268185210305546 22.19109959234431 72-73 22.03763354218564 27.625076774419444 28.19669913682577 22.140590546569147 74-75 21.9320489198281 27.72654188880367 28.18179112691139 22.159618064456843 76-77 22.022234881954507 27.694576943326876 28.11497939596749 22.16820877875112 78-79 21.977612565094358 27.718514106468096 28.08681400257228 22.217059325865275 80-81 22.018343884536563 27.734020450211656 28.059476033350496 22.18815963190129 82-83 22.057461176651795 27.7084123706117 28.178975010368408 22.0551514423681 84-85 22.14091978427111 27.7172844763902 28.08449917104923 22.057296568289456 86-87 22.041828868499476 27.773046567463783 28.076382370965124 22.108742193071617 88-89 22.099119739135908 27.744880561717416 28.03718089837898 22.11881880076769 90-91 22.132997078502058 27.796569865442894 28.040717131704213 22.029715924350835 92-93 22.14164019643349 27.74619132281349 28.04320944454977 22.068959036203246 94-95 21.986065864245614 27.862292026817727 28.043921489617755 22.107720619318908 96-97 22.03409474768265 27.88498936091707 28.049829765202954 22.03108612619732 98-99 22.343117454522073 28.407712243842088 28.086791887073293 21.162378414562554 100-101 22.87642258748484 30.963190267726386 25.5004258756684 20.65996126912037 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2081.0 1 2023.5 2 2337.5 3 2804.0 4 3325.5 5 4392.5 6 5716.5 7 7880.5 8 10253.0 9 11692.0 10 11727.0 11 11266.0 12 12021.0 13 15111.5 14 21831.0 15 29528.5 16 34849.0 17 37516.5 18 37523.5 19 35198.5 20 32260.0 21 30491.0 22 31229.0 23 35342.5 24 43694.0 25 56460.5 26 71695.5 27 88642.0 28 107758.0 29 128750.5 30 149686.0 31 170308.5 32 191669.5 33 214179.5 34 234387.0 35 252341.0 36 274333.5 37 294322.0 38 308753.5 39 323011.5 40 337050.0 41 349098.0 42 356385.0 43 361896.0 44 367948.5 45 373878.0 46 377360.0 47 376731.5 48 374302.5 49 369837.0 50 362459.5 51 350323.5 52 331292.0 53 310056.0 54 288107.5 55 263875.5 56 240074.0 57 214666.0 58 187948.0 59 161301.5 60 134574.5 61 110064.5 62 87966.0 63 68474.0 64 52498.0 65 39310.0 66 29415.0 67 22396.5 68 16492.5 69 12154.0 70 9185.5 71 6520.5 72 4483.0 73 2966.0 74 1959.5 75 1279.0 76 798.5 77 482.0 78 307.0 79 211.0 80 142.0 81 88.0 82 55.5 83 41.5 84 31.0 85 23.5 86 16.5 87 10.5 88 9.5 89 9.0 90 5.5 91 1.5 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0033701712080563442 4 0.0 5 0.036209746467954204 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.1196582086565927E-5 12-13 1.231624029522252E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.6354381448003104E-5 46-47 0.0010516134203633022 48-49 1.1780210718519227E-5 50-51 7.715338205114403E-5 52-53 0.0015060364270767898 54-55 7.824207628951517E-4 56-57 0.003869045778088757 58-59 0.008379269577054076 60-61 0.010459169876999424 62-63 0.006225605000942221 64-65 0.007912178199515988 66-67 0.004905965628981368 68-69 0.002486867938026488 70-71 0.004132211784323697 72-73 0.0026016871358608786 74-75 0.0014879977319781938 76-77 0.001770985153614199 78-79 7.64129400463408E-4 80-81 4.1595024269019444E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.064599172309311E-4 94-95 2.5184276952213195E-4 96-97 1.0927184737607697E-4 98-99 6.685013649070284E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 81.0 20-21 292.0 22-23 587.0 24-25 996.0 26-27 2244.0 28-29 5495.0 30-31 15477.0 32-33 20047.0 34-35 27889.0 36-37 44790.0 38-39 53496.0 40-41 53135.0 42-43 60564.0 44-45 69885.0 46-47 70929.0 48-49 65387.0 50-51 59553.0 52-53 57761.0 54-55 61762.0 56-57 64032.0 58-59 63689.0 60-61 62561.0 62-63 61125.0 64-65 63512.0 66-67 67588.0 68-69 68664.0 70-71 67893.0 72-73 64536.0 74-75 65644.0 76-77 68840.0 78-79 71759.0 80-81 71875.0 82-83 69089.0 84-85 68132.0 86-87 70786.0 88-89 73703.0 90-91 76096.0 92-93 73579.0 94-95 79666.0 96-97 130965.0 98-99 749438.0 100-101 6007755.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.54883509005035 #Duplication Level Percentage of deduplicated Percentage of total 1 88.77813459711518 74.17309727056669 2 7.6774174146898995 12.82878562994814 3 1.9241703431853014 4.822865720638629 4 0.7327233525137666 2.44872730183206 5 0.3474088423472447 1.4512802039047623 6 0.18232039495177066 0.9139593966827002 7 0.1005013786750683 0.5877741179272189 8 0.06245386638791923 0.41743582268642415 9 0.04408897516803221 0.33152242640429225 >10 0.14867024663046458 1.8259740519033711 >50 0.0015646164585305352 0.08550700561290187 >100 5.008124662454585E-4 0.08162296324491075 >500 4.5159410597357654E-5 0.03144808864792359 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1196582086565927E-5 0.0 0.0 0.0 3 0.0 1.1196582086565927E-5 0.0 0.0 0.0 4 0.0 3.358974625969778E-5 0.0 0.0 0.0 5 0.0 4.4786328346263706E-5 0.0 0.0 0.0 6 0.0 4.4786328346263706E-5 0.0 0.0 0.0 7 0.0 5.598291043282963E-5 0.0 0.0 0.0 8 0.0 5.598291043282963E-5 0.0 0.0 1.1196582086565927E-5 9 0.0 7.837607460596149E-5 0.0 0.0 2.2393164173131853E-5 10-11 0.0 7.837607460596149E-5 0.0 0.0 2.2393164173131853E-5 12-13 0.0 1.0076923877909334E-4 0.0 0.0 3.358974625969778E-5 14-15 0.0 1.5115385816864E-4 0.0 0.0 6.717949251939556E-5 16-17 0.0 1.5675214921192297E-4 0.0 0.0 8.957265669252741E-5 18-19 0.0 1.959401865149037E-4 0.0 0.0 1.0076923877909334E-4 20-21 0.0 2.3512822381788445E-4 0.0 0.0 1.1756411190894222E-4 22-23 0.0 2.631196790342993E-4 0.0 0.0 1.3435898503879113E-4 24-25 0.0 3.07906007380563E-4 0.0 5.598291043282963E-6 1.5675214921192297E-4 26-27 0.0 3.358974625969778E-4 0.0 3.9188037302980744E-5 1.5675214921192297E-4 28-29 0.0 3.4149575364026075E-4 0.0 2.631196790342993E-4 1.6235044025520595E-4 30-31 0.0 3.806837909432415E-4 0.0 8.789316937954253E-4 1.679487312984889E-4 32-33 0.0 3.806837909432415E-4 0.0 0.0024856412232176356 1.7914531338505482E-4 34-35 0.0 4.142735372029393E-4 0.0 0.004338675558544296 2.0153847755818667E-4 36-37 0.0 4.5346157450592E-4 0.0 0.007076239878709666 2.0153847755818667E-4 38-39 0.0 4.702564476357689E-4 0.0 0.011398120564124113 2.0153847755818667E-4 40-41 0.0 5.318376491118815E-4 0.0 0.016347009846386252 2.0153847755818667E-4 42-43 0.0 5.430342311984475E-4 0.0 0.020825642681012623 2.0713676860146965E-4 44-45 0.0 6.550000520641067E-4 0.0 0.02623359182882397 2.1833335068803555E-4 46-47 0.0 7.725641639730489E-4 0.0 0.03178149825271738 2.2393164173131852E-4 48-49 0.0 7.725641639730489E-4 0.0 0.037698891885467475 2.2393164173131852E-4 50-51 0.0 8.509402385790104E-4 0.0 0.043537909443611605 2.2393164173131852E-4 52-53 0.0 8.509402385790104E-4 0.0 0.04893466200933638 2.407265148611674E-4 54-55 0.0 8.845299848387082E-4 0.0 0.05471769665704768 2.575213879910163E-4 56-57 0.0 9.069231490118401E-4 0.0 0.060590303961451514 2.575213879910163E-4 58-59 0.0 9.349146042282549E-4 0.0 0.06645731297481206 2.631196790342993E-4 60-61 0.0 9.629060594446697E-4 0.0 0.07189885186888309 2.6871797007758225E-4 62-63 0.0 0.0010188889698774994 0.0 0.07759231385990187 2.7991455216414815E-4 64-65 0.0 0.001063675298223763 0.0 0.08317940832109827 2.7991455216414815E-4 66-67 0.0 0.001074871880310329 0.0 0.08890646005837674 2.7991455216414815E-4 68-69 0.0 0.0010916667534401777 0.0 0.09429201604201495 2.7991455216414815E-4 70-71 0.0 0.0011252564996998755 0.0 0.09954321304061436 2.7991455216414815E-4 72-73 0.0 0.0011588462459595733 0.0 0.10386509372602881 3.1350429842384595E-4 74-75 0.0 0.0011700428280461393 0.0 0.10729124784451799 3.1350429842384595E-4 76-77 0.0 0.001214829156392403 0.0 0.11033671817206392 3.1350429842384595E-4 78-79 0.0 0.0012428206116088178 0.0 0.11299590641762333 3.1350429842384595E-4 80-81 0.0 0.0012428206116088178 0.0 0.11422753044714559 3.191025894671289E-4 82-83 0.0 0.001248418902652101 0.0 0.11460821423808883 3.5829062677010965E-4 84-85 0.0 0.0012540171936953838 0.0 0.1149441117006858 3.5829062677010965E-4 86-87 0.0 0.0012540171936953838 0.0 0.11512885530511413 3.5829062677010965E-4 88-89 0.0 0.0012708120668252327 0.0 0.11517923992450368 3.5829062677010965E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11460 0.0 50.871544 1 GTATCAA 20630 0.0 34.49937 1 TCAACGC 25450 0.0 30.161705 4 ATCAACG 25600 0.0 29.985815 3 TATCAAC 25885 0.0 29.42123 2 CAACGCA 26425 0.0 28.999624 5 AACGCAG 27400 0.0 28.024073 6 ACGCAGA 32645 0.0 23.548054 7 CGCAGAG 33755 0.0 22.786537 8 TGGTATC 5725 0.0 22.334888 2 GTGGTAT 5970 0.0 22.28955 1 GCAGAGT 38210 0.0 20.039072 9 GAGTACT 21860 0.0 19.287716 12-13 CAGAGTA 37805 0.0 18.190548 10-11 GTACTTT 24010 0.0 17.443363 14-15 AGAGTAC 35255 0.0 16.937395 10-11 TACATGG 27010 0.0 15.951409 2 GTACATG 26680 0.0 15.645077 1 ACATGGG 27130 0.0 15.417529 3 AGTACTT 23940 0.0 15.358394 12-13 >>END_MODULE