##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140166_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7805400 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.620794578112587 18.0 18.0 32.0 18.0 33.0 2 27.975580239321495 30.0 25.0 32.0 18.0 33.0 3 29.959868936889844 31.0 29.0 33.0 25.0 33.0 4 30.583371768262996 32.0 31.0 33.0 27.0 33.0 5 31.46636187767443 33.0 32.0 33.0 28.0 33.0 6 35.740471468470545 37.0 36.0 38.0 31.0 38.0 7 36.06780421246829 38.0 37.0 38.0 33.0 38.0 8 36.577274194788224 38.0 37.0 38.0 34.0 38.0 9 36.73935480564737 38.0 38.0 38.0 34.0 38.0 10-11 36.81724876367643 38.0 38.0 38.0 35.0 38.0 12-13 36.84561495887462 38.0 38.0 38.0 35.0 38.0 14-15 36.867806134214774 38.0 38.0 38.0 35.0 38.0 16-17 36.85817337996771 38.0 38.0 38.0 35.0 38.0 18-19 36.866550593179085 38.0 38.0 38.0 35.0 38.0 20-21 36.86866720149882 38.0 38.0 38.0 35.0 38.0 22-23 36.876819480102995 38.0 38.0 38.0 35.0 38.0 24-25 36.87237460759374 38.0 38.0 38.0 35.0 38.0 26-27 36.823880244262654 38.0 38.0 38.0 35.0 38.0 28-29 36.80406133949633 38.0 38.0 38.0 35.0 38.0 30-31 36.794141605155176 38.0 38.0 38.0 35.0 38.0 32-33 36.77671621843041 38.0 38.0 38.0 35.0 38.0 34-35 36.74865274979287 38.0 38.0 38.0 35.0 38.0 36-37 36.72060195857312 38.0 38.0 38.0 34.5 38.0 38-39 36.70648872468838 38.0 38.0 38.0 34.0 38.0 40-41 36.69263974751682 38.0 38.0 38.0 34.0 38.0 42-43 36.6478131407666 38.0 38.0 38.0 34.0 38.0 44-45 36.58360822789588 38.0 38.0 38.0 34.0 38.0 46-47 36.535882714625316 38.0 38.0 38.0 34.0 38.0 48-49 36.50116530767707 38.0 38.0 38.0 34.0 38.0 50-51 36.48754843882011 38.0 38.0 38.0 34.0 38.0 52-53 36.45139921947427 38.0 38.0 38.0 34.0 38.0 54-55 36.422871216233055 38.0 38.0 38.0 34.0 38.0 56-57 36.394545407209236 38.0 38.0 38.0 34.0 38.0 58-59 36.37623172254097 38.0 38.0 38.0 34.0 38.0 60-61 36.379631361790985 38.0 38.0 38.0 34.0 38.0 62-63 36.36463508084171 38.0 38.0 38.0 34.0 38.0 64-65 36.35389897659549 38.0 38.0 38.0 34.0 38.0 66-67 36.32733913036909 38.0 38.0 38.0 33.0 38.0 68-69 36.32224137335456 38.0 38.0 38.0 33.0 38.0 70-71 36.31143362565909 38.0 37.5 38.0 33.0 38.0 72-73 36.29233493713103 38.0 37.0 38.0 33.0 38.0 74-75 36.2834856749877 38.0 37.0 38.0 33.0 38.0 76-77 36.26381593300894 38.0 37.0 38.0 33.0 38.0 78-79 36.27292651858616 38.0 37.0 38.0 33.0 38.0 80-81 36.23196159734799 38.0 37.0 38.0 33.0 38.0 82-83 36.234117722462784 38.0 37.0 38.0 33.0 38.0 84-85 36.21990144320556 38.0 37.0 38.0 33.0 38.0 86-87 36.18498489371332 38.0 37.0 38.0 33.0 38.0 88-89 36.176673112738 38.0 37.0 38.0 33.0 38.0 90-91 36.178096551673875 38.0 37.0 38.0 33.0 38.0 92-93 36.158008829601876 38.0 37.0 38.0 33.0 38.0 94-95 36.13746528067822 38.0 37.0 38.0 33.0 38.0 96-97 36.14582388047175 38.0 37.0 38.0 33.0 38.0 98-99 36.18128797858396 38.0 37.0 38.0 33.0 38.0 100-101 35.580526370892315 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 29.0 19 40.0 20 93.0 21 396.0 22 1689.0 23 4940.0 24 10987.0 25 21416.0 26 35415.0 27 54268.0 28 77894.0 29 104361.0 30 135068.0 31 170646.0 32 218134.0 33 287066.0 34 404600.0 35 656961.0 36 1567870.0 37 4053522.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.7765136956466 25.74946831680631 14.370973941117688 23.103044046429392 2 14.500896815025497 20.791618623004588 39.53912675839803 25.168357803571883 3 17.967753061314436 25.15279666845352 31.37719175969079 25.502258510541253 4 13.664565557178362 18.25310682348118 38.236579803725625 29.845747815614832 5 14.09781126283315 36.587014199434456 34.981357546883615 14.333816990848785 6 30.13900632895175 38.27847387705947 18.149973095549235 13.432546698439543 7 26.575793681297565 32.88593794040023 22.73643887565019 17.801829502652012 8 24.087272913623902 37.67581417992672 20.381095139262563 17.855817767186817 9 24.998744458964307 17.470007943218796 21.48971225049325 36.04153534732365 10-11 24.242711727951914 27.18382960410931 28.35222591745624 20.221232750482535 12-13 24.894230127415813 24.507228275233945 28.871693646530623 21.726847950819618 14-15 22.056211084633716 25.967996515233043 26.626636687421527 25.349155712711713 16-17 21.528480282881084 29.105664027468166 27.389634099469596 21.976221590181154 18-19 21.487649575934608 28.138468239936454 29.279940810208316 21.093941373920618 20-21 22.399260602652653 27.177573680775264 29.290599671978267 21.132566044593815 22-23 22.049460647346184 27.091727619734858 29.168932333894347 21.689879399024615 24-25 21.775728166162818 27.26514636744347 29.26052788611197 21.698597580281735 26-27 21.782810476500423 27.37727190214879 29.157751294318874 21.68216632703191 28-29 21.719651857417862 27.434428739280786 29.21458064832893 21.631338754972422 30-31 21.965845554810546 27.256299856839806 29.160889835934157 21.61696475241549 32-33 21.784972498756897 27.410264157674906 29.073467009882247 21.731296333685947 34-35 21.85638834883427 27.45680557698743 29.076469244107578 21.61033683007072 36-37 21.930374499642078 27.291100688562807 29.07364981711 21.70487499468512 38-39 21.741228492043426 27.47923381467633 29.098021096860894 21.68151659641935 40-41 22.011014810940672 27.377538176823208 28.950087072468435 21.661359939767692 42-43 21.851209753250288 27.49945529393535 28.769833984364094 21.87950096845027 44-45 21.961760397342672 27.550244867050917 28.631356870992597 21.856637864613816 46-47 22.038001772407302 27.50352865030751 28.45263643086895 22.00583314641624 48-49 21.968462603119885 27.6612881828633 28.42108480289211 21.949164411124706 50-51 21.9297126407544 27.74326982089297 28.298230199131684 22.028787339220944 52-53 22.111238783941822 27.742039599005174 28.161262701318773 21.98545891573423 54-55 22.11945539797595 27.636066713809633 28.230076321845132 22.014401566369283 56-57 22.100394590360693 27.733023909174214 28.220307589668554 21.94627391079654 58-59 22.023877414085486 27.7841613403599 28.248833850385672 21.943127395168936 60-61 22.076927695846855 27.713888683947722 28.28202762690955 21.927155993295866 62-63 22.132037102678346 27.762629572550573 28.219465632290337 21.885867692480744 64-65 22.03311888775919 27.715427891950135 28.249017474891815 22.00243574539886 66-67 22.10832449878723 27.764138604180395 28.128893986449448 21.998642910582934 68-69 22.079386960652972 27.632535987156814 28.212972020375048 22.075105031815166 70-71 22.020535157230764 27.446614474865388 28.285466414465194 22.247383953438653 72-73 22.14389336403121 27.53574648408478 28.2120517556817 22.10830839620231 74-75 21.916524812807666 27.657802613426107 28.218062458320713 22.207610115445508 76-77 22.083207117244424 27.6610952522357 28.12352364481226 22.132173985707613 78-79 21.996056804120506 27.74426629165182 28.051691951389685 22.20798495283799 80-81 22.08014064442886 27.668495878878787 28.059929465074696 22.191434011617662 82-83 22.141199842006614 27.663340075856453 28.133011601719282 22.06244848041765 84-85 22.232017240263076 27.653439834237048 28.04501366416619 22.069529261333685 86-87 22.044987451282896 27.742724686344506 28.036740371031204 22.175547491341394 88-89 22.14759728816668 27.67047177413605 28.05026299571129 22.131667941985985 90-91 22.161317209702027 27.775531679991406 28.03894974925353 22.024201361053038 92-93 22.226272199586028 27.711717323227937 28.022087258111107 22.039923219074932 94-95 22.01259756894065 27.83750505526453 28.063595897890924 22.086301477903895 96-97 22.024860565575977 27.86174082483104 28.067849126914545 22.045549482678435 98-99 22.356207001160517 28.370629103450344 28.059681590763592 21.21348230462555 100-101 22.92013654595206 30.94837763219762 25.45529707199197 20.676188749858344 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2142.0 1 2045.0 2 2190.5 3 2469.0 4 2893.5 5 3834.0 6 5007.0 7 7108.5 8 9365.5 9 10681.0 10 10602.0 11 10125.0 12 10990.0 13 13519.5 14 19229.0 15 26258.5 16 31249.0 17 33700.0 18 33661.0 19 31892.5 20 29728.0 21 27885.5 22 27988.0 23 31637.5 24 39225.0 25 50591.0 26 64718.0 27 80391.5 28 97462.0 29 115082.5 30 131716.5 31 148543.5 32 166307.5 33 185920.5 34 203958.0 35 219641.5 36 239065.0 37 255599.0 38 265855.0 39 275815.5 40 286310.0 41 296157.0 42 302101.0 43 306655.0 44 312198.0 45 316631.5 46 317428.5 47 316741.0 48 315341.0 49 311277.5 50 305414.0 51 296549.0 52 282631.5 53 266035.0 54 250349.5 55 233545.0 56 214660.0 57 193969.5 58 172721.0 59 149956.5 60 125972.5 61 102981.5 62 81100.0 63 62443.5 64 47673.5 65 36613.0 66 28414.5 67 21157.5 68 15180.0 69 11141.5 70 8039.5 71 5452.5 72 3717.5 73 2467.5 74 1585.5 75 1011.5 76 635.5 77 373.5 78 233.5 79 149.5 80 93.0 81 57.0 82 41.0 83 25.5 84 17.5 85 13.0 86 10.0 87 8.5 88 6.5 89 5.0 90 4.5 91 3.5 92 3.0 93 3.5 94 2.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0032797806646680506 4 0.0 5 0.039037076895482616 6 0.0 7 0.0 8 0.0 9 0.0 10-11 6.405821610679786E-6 12-13 1.4092807543495528E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.9840675408335983E-5 46-47 8.731979294410747E-4 48-49 1.343417292212136E-5 50-51 6.0885745530732585E-5 52-53 0.0013209707718874813 54-55 6.648498673041915E-4 56-57 0.0037346550376458065 58-59 0.008490862239758723 60-61 0.010788900519261376 62-63 0.006371884339079649 64-65 0.008251144073361697 66-67 0.00514934054422442 68-69 0.0025127719940297114 70-71 0.004550895430544198 72-73 0.002701653470655638 74-75 0.0013541421320901273 76-77 0.0019845998039573517 78-79 7.602408202050031E-4 80-81 4.7100042769877544E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.1705830684552057E-4 94-95 3.3302294511846844E-4 96-97 1.3973424683364253E-4 98-99 5.506464250170361E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 71.0 20-21 285.0 22-23 583.0 24-25 875.0 26-27 1989.0 28-29 4590.0 30-31 12464.0 32-33 15979.0 34-35 22435.0 36-37 36666.0 38-39 43211.0 40-41 42961.0 42-43 48881.0 44-45 58301.0 46-47 58479.0 48-49 54284.0 50-51 48532.0 52-53 47360.0 54-55 51239.0 56-57 53113.0 58-59 52824.0 60-61 51919.0 62-63 50115.0 64-65 52615.0 66-67 56737.0 68-69 57608.0 70-71 57241.0 72-73 53509.0 74-75 54633.0 76-77 58175.0 78-79 60680.0 80-81 60645.0 82-83 58042.0 84-85 57224.0 86-87 59024.0 88-89 62215.0 90-91 64734.0 92-93 63226.0 94-95 67965.0 96-97 112973.0 98-99 662338.0 100-101 5328660.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.19687889517526 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1406397322733 75.05363648176663 2 7.501871594971413 12.632683483379267 3 1.8521220382403087 4.678286848584133 4 0.6995074504418042 2.355853763644856 5 0.30769491517555314 1.2953475754848638 6 0.17205827194256298 0.8692061691396665 7 0.09851803388115155 0.5806437677377463 8 0.058282732721549414 0.3925779350908932 9 0.04352866705376937 0.3298480117555162 >10 0.1236484316166252 1.5744787834000566 >50 0.0015327244960586935 0.08522969645045038 >100 5.205171806939243E-4 0.08711366081157579 >500 2.4963344068986184E-5 0.014145353974268492 >1k 4.9926661135813755E-5 0.050948468780151454 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.281164322135957E-5 1.281164322135957E-5 2 0.0 1.281164322135957E-5 0.0 1.281164322135957E-5 1.281164322135957E-5 3 0.0 1.281164322135957E-5 0.0 1.281164322135957E-5 1.281164322135957E-5 4 0.0 1.4092807543495528E-4 0.0 1.281164322135957E-5 1.281164322135957E-5 5 0.0 1.6655136187767442E-4 0.0 1.281164322135957E-5 1.281164322135957E-5 6 0.0 1.6655136187767442E-4 0.0 1.281164322135957E-5 2.562328644271914E-5 7 1.281164322135957E-5 1.79363005099034E-4 0.0 1.281164322135957E-5 2.562328644271914E-5 8 1.281164322135957E-5 2.0498629154175313E-4 0.0 1.281164322135957E-5 5.124657288543828E-5 9 3.8434929664078716E-5 2.9466779409127015E-4 0.0 3.8434929664078716E-5 7.686985932815743E-5 10-11 5.7652394496118074E-5 2.9466779409127015E-4 0.0 3.8434929664078716E-5 7.686985932815743E-5 12-13 7.686985932815743E-5 3.0747943731262973E-4 0.0 4.48407512747585E-5 7.686985932815743E-5 14-15 7.686985932815743E-5 3.971609398621467E-4 0.0 7.686985932815743E-5 1.4092807543495528E-4 16-17 7.686985932815743E-5 4.0997258308350627E-4 0.0 1.1530478899223615E-4 1.79363005099034E-4 18-19 7.686985932815743E-5 4.548133343582648E-4 0.0 1.345222538242755E-4 1.9217464832039355E-4 20-21 7.686985932815743E-5 4.996540856330233E-4 0.0 1.729571834883542E-4 2.1139211315243292E-4 22-23 7.686985932815743E-5 5.509006585184615E-4 0.0 2.1139211315243292E-4 2.4342122120583185E-4 24-25 7.686985932815743E-5 5.829297665718605E-4 0.0 2.1779793476311271E-4 2.8185615086991057E-4 26-27 8.327568093883722E-5 6.021472314038999E-4 0.0 2.626386860378712E-4 2.8185615086991057E-4 28-29 8.9681502549517E-5 6.085530530145797E-4 0.0 4.3559586952622543E-4 2.8185615086991057E-4 30-31 8.9681502549517E-5 7.238578420068158E-4 0.0 0.001050554744151485 2.8185615086991057E-4 32-33 8.9681502549517E-5 7.49481128449535E-4 0.0 0.0023189074230660824 3.3310272375534883E-4 34-35 8.9681502549517E-5 8.9681502549517E-4 0.0 0.004195813154995259 3.715376534194276E-4 36-37 8.9681502549517E-5 0.001044148922540805 0.0 0.0067645476208778536 3.715376534194276E-4 38-39 8.9681502549517E-5 0.0010633663873728444 0.0 0.010742562841110002 3.715376534194276E-4 40-41 8.9681502549517E-5 0.0011466420683116816 0.0 0.01527147871986061 3.8434929664078716E-4 42-43 8.9681502549517E-5 0.0011914828195864402 0.0 0.019204653188817998 3.9075511825146695E-4 44-45 8.9681502549517E-5 0.0013260050734107158 0.0 0.023836062213339483 3.9716093986214674E-4 46-47 8.9681502549517E-5 0.001434904040792272 0.0 0.02933866297691342 4.2919004791554564E-4 48-49 8.9681502549517E-5 0.001434904040792272 0.0 0.03495016270786891 4.868424424116637E-4 50-51 8.9681502549517E-5 0.0015758321162272274 0.0 0.04038229943372537 4.996540856330233E-4 52-53 8.9681502549517E-5 0.001639890332334025 0.0 0.045609449868040074 5.573064801291413E-4 54-55 8.9681502549517E-5 0.0016462961539447049 0.0 0.05090706434007226 6.27770517846619E-4 56-57 1.1530478899223615E-4 0.0016655136187767442 0.0 0.05646731749814231 6.405821610679786E-4 58-59 1.4092807543495528E-4 0.0016847310836087836 0.0 0.06207241140748712 6.469879826786584E-4 60-61 1.4092807543495528E-4 0.0017423834781049017 0.0 0.06785046250032029 6.533938042893382E-4 62-63 1.5373971865631486E-4 0.0017872242293796602 0.0 0.0724114074871243 6.662054475106977E-4 64-65 1.5373971865631486E-4 0.0019986163425320933 0.0 0.07724139698157685 6.662054475106977E-4 66-67 1.5373971865631486E-4 0.002037051272196172 0.0 0.08227637276757117 6.662054475106977E-4 68-69 1.5373971865631486E-4 0.00208189202347093 0.0 0.08727931944551208 6.662054475106977E-4 70-71 1.5373971865631486E-4 0.002113921131524329 0.0 0.09213493222640737 7.17452020396136E-4 72-73 1.5373971865631486E-4 0.002145950239577728 0.0 0.0957990621877162 7.943218797242935E-4 74-75 1.5373971865631486E-4 0.002235631742127245 0.0 0.0989955671714454 7.943218797242935E-4 76-77 1.5373971865631486E-4 0.002331719066287442 0.0 0.10189099853947267 7.943218797242935E-4 78-79 1.6014554026699465E-4 0.0023701539959515208 0.0 0.1046711251185077 7.943218797242935E-4 80-81 1.6655136187767442E-4 0.0023765598175622005 0.0 0.10580495554359802 8.07133522945653E-4 82-83 1.6655136187767442E-4 0.00238937146078356 0.0 0.10623414559151356 8.583800958310913E-4 84-85 1.6655136187767442E-4 0.002421400568836959 0.0 0.1065736541368796 8.583800958310913E-4 86-87 1.6655136187767442E-4 0.002479052963333077 0.0 0.10672098803392523 8.583800958310913E-4 88-89 1.6655136187767442E-4 0.0025687344658825943 0.0 0.10677223460681066 8.775975606631306E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10735 0.0 52.01679 1 GTATCAA 19065 0.0 34.452606 1 TCAACGC 23050 0.0 30.02613 4 ATCAACG 23325 0.0 29.635538 3 CAACGCA 23985 0.0 28.891953 5 TATCAAC 23730 0.0 28.817709 2 AACGCAG 24800 0.0 27.94786 6 ACGCAGA 28960 0.0 23.918526 7 CGCAGAG 29565 0.0 23.443796 8 GTGGTAT 4950 0.0 23.406364 1 TGGTATC 4830 0.0 22.905731 2 GCAGAGT 33930 0.0 20.453478 9 GAGTACT 19615 0.0 20.431404 12-13 CAGAGTA 33695 0.0 18.884092 10-11 GTACTTT 21520 0.0 18.450924 14-15 AGAGTAC 31455 0.0 17.197664 10-11 ACTTTTT 25220 0.0 15.822655 16-17 AGTACTT 21670 0.0 15.530424 12-13 TACATGG 23385 0.0 13.932266 2 GTACATG 23240 0.0 13.925482 1 >>END_MODULE