##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140165_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9848525 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.557692649406892 18.0 18.0 32.0 18.0 33.0 2 27.979097479064123 30.0 25.0 32.0 18.0 33.0 3 29.96021861141643 31.0 29.0 33.0 25.0 33.0 4 30.585292010732573 32.0 31.0 33.0 27.0 33.0 5 31.489488629007898 33.0 32.0 33.0 28.0 33.0 6 35.75678195465819 37.0 36.0 38.0 31.0 38.0 7 36.082141335885325 38.0 37.0 38.0 33.0 38.0 8 36.58567694147093 38.0 37.0 38.0 34.0 38.0 9 36.74353255944418 38.0 38.0 38.0 34.0 38.0 10-11 36.819430270015054 38.0 38.0 38.0 35.0 38.0 12-13 36.849603163925565 38.0 38.0 38.0 35.0 38.0 14-15 36.872786686331196 38.0 38.0 38.0 35.0 38.0 16-17 36.86420250748209 38.0 38.0 38.0 35.0 38.0 18-19 36.87052705862045 38.0 38.0 38.0 35.0 38.0 20-21 36.87296712152357 38.0 38.0 38.0 35.0 38.0 22-23 36.88066403672504 38.0 38.0 38.0 35.0 38.0 24-25 36.876202265210665 38.0 38.0 38.0 35.0 38.0 26-27 36.8287411208979 38.0 38.0 38.0 35.0 38.0 28-29 36.80802880254723 38.0 38.0 38.0 35.0 38.0 30-31 36.79744837221063 38.0 38.0 38.0 35.0 38.0 32-33 36.777370780575566 38.0 38.0 38.0 35.0 38.0 34-35 36.747963875617515 38.0 38.0 38.0 35.0 38.0 36-37 36.718985162340054 38.0 38.0 38.0 34.5 38.0 38-39 36.70426541597831 38.0 38.0 38.0 34.0 38.0 40-41 36.69284177827956 38.0 38.0 38.0 34.0 38.0 42-43 36.645710679849174 38.0 38.0 38.0 34.0 38.0 44-45 36.58030362492997 38.0 38.0 38.0 34.0 38.0 46-47 36.5314983179553 38.0 38.0 38.0 34.0 38.0 48-49 36.498243164167974 38.0 38.0 38.0 34.0 38.0 50-51 36.48368892521862 38.0 38.0 38.0 34.0 38.0 52-53 36.451290630529584 38.0 38.0 38.0 34.0 38.0 54-55 36.42235200912076 38.0 38.0 38.0 34.0 38.0 56-57 36.39419877672387 38.0 38.0 38.0 34.0 38.0 58-59 36.37578295000485 38.0 38.0 38.0 34.0 38.0 60-61 36.379522582567006 38.0 38.0 38.0 34.0 38.0 62-63 36.36334059655032 38.0 38.0 38.0 34.0 38.0 64-65 36.35614527980539 38.0 38.0 38.0 34.0 38.0 66-67 36.32994674076761 38.0 38.0 38.0 33.0 38.0 68-69 36.326152232351205 38.0 38.0 38.0 33.0 38.0 70-71 36.314123997802604 38.0 38.0 38.0 33.0 38.0 72-73 36.295233167460054 38.0 37.0 38.0 33.0 38.0 74-75 36.28634091590834 38.0 37.0 38.0 33.0 38.0 76-77 36.26524759837053 38.0 37.0 38.0 33.0 38.0 78-79 36.278688643000244 38.0 37.0 38.0 33.0 38.0 80-81 36.23825513388154 38.0 37.0 38.0 33.0 38.0 82-83 36.24025895578774 38.0 37.0 38.0 33.0 38.0 84-85 36.226178638099384 38.0 37.0 38.0 33.0 38.0 86-87 36.1881887822467 38.0 37.0 38.0 33.0 38.0 88-89 36.17912814602546 38.0 37.0 38.0 33.0 38.0 90-91 36.18256193421245 38.0 37.0 38.0 33.0 38.0 92-93 36.16626077550755 38.0 37.0 38.0 33.0 38.0 94-95 36.14418034806425 38.0 37.0 38.0 33.0 38.0 96-97 36.15395793933981 38.0 37.0 38.0 33.0 38.0 98-99 36.187316969061754 38.0 37.0 38.0 33.0 38.0 100-101 35.58686019643685 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 36.0 19 54.0 20 100.0 21 532.0 22 2097.0 23 6357.0 24 14210.0 25 26877.0 26 45115.0 27 68499.0 28 97655.0 29 131746.0 30 170183.0 31 216316.0 32 275341.0 33 362797.0 34 511052.0 35 825703.0 36 1971823.0 37 5122025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.76552580208711 25.810738156221362 14.324632368806498 23.099103672885025 2 14.509198077884761 20.86520570339213 39.53361543987551 25.091980778847596 3 17.932148495584784 25.217196786584207 31.38297591481581 25.467678803015207 4 13.655801249425675 18.27195442972425 38.197983962065386 29.874260358784692 5 14.04629589468615 36.63328772810276 34.96278326734644 14.357633109864656 6 30.06698972688804 38.2904851234068 18.174031136642288 13.46849401306287 7 26.421550435217455 33.02175706514427 22.765571494208523 17.791121005429748 8 23.99883231245288 37.65605509454461 20.45044308665511 17.894669506347398 9 24.960052393632548 17.494040985832903 21.468991549495993 36.076915071038556 10-11 24.170328679217754 27.187095608798618 28.413208335239286 20.229367376744342 12-13 24.84226560788131 24.57082882927157 28.883355851103687 21.70354971174343 14-15 22.020926991605343 25.99160280346549 26.641893075359 25.345577129570163 16-17 21.494051139637662 29.13890658753468 27.444063958816166 21.92297831401149 18-19 21.483577490030235 28.16556286347448 29.321807072632705 21.029052573862582 20-21 22.33193387596957 27.178892363698615 29.366164311329186 21.123009449002627 22-23 21.9884822721682 27.122809645240274 29.22940891995598 21.659299162635545 24-25 21.74511964515687 27.25739689392428 29.334819936782118 21.662663524136732 26-27 21.711139562397857 27.395999168569237 29.21251694334728 21.68034432568563 28-29 21.691495789122193 27.416916959454575 29.276100068617044 21.615487182806184 30-31 21.907393049406938 27.290004328415986 29.17913189964278 21.6234707225343 32-33 21.72798693015122 27.43231419874087 29.11200225980114 21.72769661130677 34-35 21.840700965819963 27.455379477111958 29.109211902508907 21.59470765455917 36-37 21.86006761076957 27.313879058538937 29.1347052942304 21.691348036461093 38-39 21.686865598066742 27.49871960473978 29.18325482422092 21.63115997297255 40-41 21.979489097255883 27.35916211150461 29.005027088635636 21.656321702603872 42-43 21.80915360984863 27.498382763645985 28.834027277907353 21.858436348598033 44-45 21.903801818392097 27.5294513799487 28.703226650728837 21.863520150930373 46-47 21.99558728021786 27.534834284036958 28.491765961320926 21.977812474424262 48-49 21.927719600352606 27.699069024428336 28.44117023135391 21.932041143865142 50-51 21.927930658336443 27.780027850079804 28.3114994011229 21.98054209046085 52-53 22.078098364829874 27.745751855008816 28.19379955799904 21.982350222162278 54-55 22.069605189789062 27.63173169769751 28.301698649512435 21.996964463000992 56-57 22.030411596058077 27.74512629760819 28.25514988251385 21.969312223819877 58-59 22.002611010460164 27.803545426215102 28.254243996299266 21.939599567025468 60-61 22.048899614580534 27.74654066587585 28.320769935434814 21.8837897841088 62-63 22.10967715254704 27.766290842331642 28.270863618925983 21.85316838619534 64-65 21.9993242741663 27.71445756913135 28.274265656220386 22.011952500481954 66-67 22.045908341487454 27.81848042822994 28.130275310995493 22.00533591928711 68-69 22.014692854355506 27.707327713162215 28.22198608829229 22.055993344189986 70-71 22.017580025397034 27.495793923517837 28.292458805043186 22.19416724604195 72-73 22.05093093056646 27.56466145767385 28.213163674819835 22.17124393693986 74-75 21.910248521378392 27.67012531369603 28.209353053778646 22.21027311114693 76-77 22.080501723514633 27.66773051477959 28.133156894862495 22.118610866843284 78-79 21.979684760972308 27.731342438232215 28.062916806691145 22.226055994104332 80-81 22.08713801010884 27.691122509166792 28.03956551572871 22.182173964995656 82-83 22.06752398627996 27.69321111709014 28.153840428244937 22.085424468384968 84-85 22.183068326202964 27.708067396475805 28.047085323831972 22.06177895348926 86-87 22.079334794618 27.70992068036798 28.075693410603737 22.135051114410288 88-89 22.081909782993296 27.689863062452325 28.075764450375868 22.152462704178514 90-91 22.113394856580467 27.790687833706563 28.063019330217546 22.03289797949542 92-93 22.205126927120634 27.716019102283884 28.041499540688513 22.037354429906966 94-95 22.020466341154766 27.83882375938597 28.055112256799276 22.085597642659984 96-97 22.03043740088501 27.879100967189903 28.04517726199473 22.045284369930357 98-99 22.323553998296752 28.39476339432099 28.11011588616452 21.17156672121774 100-101 22.899693668926872 30.964554280606976 25.483836810999843 20.651915239466312 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2969.0 1 2791.5 2 2906.0 3 3275.0 4 3783.0 5 4935.5 6 6537.5 7 9297.5 8 12183.5 9 13730.0 10 13603.0 11 13078.0 12 14278.5 13 17808.0 14 25303.0 15 34394.0 16 40839.0 17 43890.0 18 43715.0 19 41470.0 20 38529.5 21 36231.5 22 36538.5 23 41102.0 24 50829.5 25 65437.5 26 83167.5 27 102524.0 28 123997.0 29 146183.5 30 166515.5 31 188752.0 32 212362.0 33 236403.0 34 259593.0 35 278735.0 36 301266.0 37 321972.0 38 336479.0 39 349516.0 40 363014.0 41 376057.5 42 383299.5 43 388602.0 44 394582.0 45 400560.5 46 403143.0 47 401889.0 48 399106.5 49 393625.0 50 385345.5 51 373615.0 52 354630.5 53 333011.5 54 312785.5 55 289796.5 56 266758.5 57 242244.0 58 215720.5 59 186859.0 60 156415.0 61 127947.5 62 101396.5 63 78816.0 64 60790.5 65 47398.0 66 37049.0 67 27619.0 68 20311.5 69 15217.0 70 10853.5 71 7259.0 72 4909.0 73 3253.5 74 2042.0 75 1264.0 76 774.0 77 451.5 78 282.0 79 181.0 80 120.0 81 72.5 82 48.5 83 39.0 84 26.5 85 16.0 86 10.5 87 7.0 88 4.0 89 2.0 90 1.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0031781408891179133 4 0.0 5 0.03953891572595896 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.5230707136347827E-5 12-13 7.107663330295654E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.196005266616011E-5 46-47 8.723430611215888E-4 48-49 2.131463670240829E-5 50-51 6.441554727207404E-5 52-53 0.0013022745007682068 54-55 6.147196636254001E-4 56-57 0.0036767866703715816 58-59 0.008375425320605704 60-61 0.010964209005748729 62-63 0.0061636756216655215 64-65 0.008196102708004752 66-67 0.005143119240374942 68-69 0.002449628720617435 70-71 0.00450170963706673 72-73 0.0029349467021264246 74-75 0.001258886177512128 76-77 0.0019282629234554376 78-79 6.645692621269521E-4 80-81 4.2912260504256535E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.37038631531135E-4 94-95 2.848960236349741E-4 96-97 9.176926087660752E-5 98-99 4.5964098659234E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 107.0 20-21 404.0 22-23 745.0 24-25 1139.0 26-27 2599.0 28-29 5871.0 30-31 16131.0 32-33 20781.0 34-35 29084.0 36-37 47038.0 38-39 55233.0 40-41 54978.0 42-43 63292.0 44-45 74572.0 46-47 75259.0 48-49 70575.0 50-51 62680.0 52-53 60828.0 54-55 65482.0 56-57 68310.0 58-59 68389.0 60-61 65788.0 62-63 64562.0 64-65 68353.0 66-67 72362.0 68-69 74233.0 70-71 73257.0 72-73 69449.0 74-75 71184.0 76-77 75135.0 78-79 78243.0 80-81 78407.0 82-83 74794.0 84-85 74419.0 86-87 76548.0 88-89 80277.0 90-91 83275.0 92-93 81426.0 94-95 88412.0 96-97 145031.0 98-99 833487.0 100-101 6676386.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.60238452186877 #Duplication Level Percentage of deduplicated Percentage of total 1 89.48322384004203 75.70494111571689 2 7.283699220194658 12.324366443370884 3 1.808496850353069 4.590094378204767 4 0.6339998919476632 2.1455161058151777 5 0.30563624225271596 1.2928777445441653 6 0.16076000346718486 0.8160407777440638 7 0.09628108732787095 0.5701926700607316 8 0.05648014422364703 0.38226839035676724 9 0.03891016408616939 0.29627033974443995 >10 0.1297040260956661 1.6374886147815384 >50 0.0022991309465058567 0.1273247796004985 >100 4.497342904085569E-4 0.07486143494336836 >500 3.9777018199860214E-5 0.020309146802367888 >1k 1.9887754205480673E-5 0.017448058314255225 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.0769023787826094E-5 0.0 0.0 0.0 3 0.0 5.0769023787826094E-5 0.0 0.0 0.0 4 0.0 1.8276848563617394E-4 0.0 0.0 0.0 5 0.0 2.0307609515130438E-4 0.0 0.0 0.0 6 4.061521903026088E-5 2.0307609515130438E-4 0.0 0.0 0.0 7 5.0769023787826094E-5 2.0307609515130438E-4 0.0 0.0 0.0 8 5.0769023787826094E-5 2.0307609515130438E-4 0.0 0.0 0.0 9 5.0769023787826094E-5 3.046141427269566E-4 0.0 0.0 1.015380475756522E-5 10-11 5.58459261666087E-5 3.046141427269566E-4 0.0 2.030760951513044E-5 1.015380475756522E-5 12-13 7.107663330295654E-5 3.046141427269566E-4 0.0 2.030760951513044E-5 1.015380475756522E-5 14-15 7.107663330295654E-5 4.264597998177392E-4 0.0 2.030760951513044E-5 1.015380475756522E-5 16-17 1.1169185233321742E-4 4.366136045753044E-4 0.0 3.046141427269566E-5 1.523070713634783E-5 18-19 1.1676875471200003E-4 4.7722882360556526E-4 0.0 3.046141427269566E-5 3.046141427269566E-5 20-21 1.2184565709078263E-4 5.178440426358261E-4 0.0 3.046141427269566E-5 3.046141427269566E-5 22-23 1.2184565709078263E-4 5.381516521509567E-4 0.0 5.0769023787826094E-5 4.061521903026088E-5 24-25 1.472301689846957E-4 6.193820902114784E-4 0.0 6.599973092417393E-5 5.0769023787826094E-5 26-27 1.624608761210435E-4 6.549204068629567E-4 0.0 1.0153804757565219E-4 5.0769023787826094E-5 28-29 1.624608761210435E-4 6.599973092417393E-4 0.0 2.538451189391305E-4 5.0769023787826094E-5 30-31 1.6753777849982612E-4 7.41227747302261E-4 0.0 7.513815520598262E-4 5.0769023787826094E-5 32-33 1.8784538801495655E-4 7.41227747302261E-4 0.0 0.0019952226348615657 5.0769023787826094E-5 34-35 2.183068022876522E-4 8.732272091506088E-4 0.0 0.0037518308579203487 5.0769023787826094E-5 36-37 2.2338370466643483E-4 0.0010052266709989566 0.0 0.006376589387750958 5.0769023787826094E-5 38-39 2.2846060704521744E-4 0.0010610725971655654 0.0 0.00996088246717148 5.0769023787826094E-5 40-41 2.5384511893913046E-4 0.0012286103756653916 0.0 0.01410363480825809 5.0769023787826094E-5 42-43 2.6907582607547833E-4 0.0012895332042107829 0.0 0.01821084883269322 5.0769023787826094E-5 44-45 2.7922963083304355E-4 0.0014418402755742611 0.0 0.023130367237733568 5.0769023787826094E-5 46-47 2.8430653321182616E-4 0.001533224518392348 0.0 0.028516960661621918 5.0769023787826094E-5 48-49 2.8430653321182616E-4 0.0015383014207711308 0.0 0.03407616876638887 5.0769023787826094E-5 50-51 2.8430653321182616E-4 0.001675377784998261 0.0 0.039097225219004876 5.0769023787826094E-5 52-53 3.046141427269566E-4 0.0016956853945133915 0.0 0.04395582079549983 5.58459261666087E-5 54-55 3.046141427269566E-4 0.0017109161016497392 0.0 0.04912918431947931 6.092282854539132E-5 56-57 3.046141427269566E-4 0.0017363006135436524 0.0 0.054632546498079665 6.092282854539132E-5 58-59 3.046141427269566E-4 0.0017616851254375655 0.0 0.06000390921483166 6.092282854539132E-5 60-61 3.4015245937843485E-4 0.0018073772468466091 0.0 0.06514173442215968 7.107663330295654E-5 62-63 3.5538316651478267E-4 0.0018276848563617395 0.0 0.07004094521768488 7.107663330295654E-5 64-65 3.5538316651478267E-4 0.0019596843182100874 0.0 0.07511784759646749 7.107663330295654E-5 66-67 3.5538316651478267E-4 0.00196476122058887 0.0 0.08036228775374993 7.107663330295654E-5 68-69 3.655369712723479E-4 0.0019952226348615657 0.0 0.08540872871825983 7.107663330295654E-5 70-71 3.807676784086957E-4 0.002040914756270609 0.0 0.09049578490180002 7.107663330295654E-5 72-73 4.0615219030260875E-4 0.0020561454634069566 0.0 0.09436946141681116 8.123043806052176E-5 74-75 4.1630599506017397E-4 0.0020866068776796524 0.0 0.09739529523456558 8.123043806052176E-5 76-77 4.1630599506017397E-4 0.0021729142181189567 0.0 0.10024343746906263 8.123043806052176E-5 78-79 4.1630599506017397E-4 0.002213529437149218 0.0 0.10297988785122644 8.123043806052176E-5 80-81 4.1630599506017397E-4 0.002238913949043131 0.0 0.10403080664363445 9.646114519686958E-5 82-83 4.1630599506017397E-4 0.0022744522656946093 0.0 0.10443188193155828 1.1676875471200003E-4 84-85 4.1630599506017397E-4 0.002299836777588522 0.0 0.1048329572194821 1.2184565709078263E-4 86-87 4.1630599506017397E-4 0.0023455288989975656 0.0 0.10505634092414853 1.2184565709078263E-4 88-89 4.264597998177392E-4 0.002492759067982261 0.0 0.10511218685031515 1.2184565709078263E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13500 0.0 49.739086 1 GTATCAA 24420 0.0 35.872677 1 TCAACGC 29850 0.0 30.847454 4 ATCAACG 30100 0.0 30.549116 3 TATCAAC 30380 0.0 29.981068 2 CAACGCA 30705 0.0 29.903454 5 AACGCAG 31745 0.0 28.95197 6 ACGCAGA 37000 0.0 24.863518 7 CGCAGAG 37740 0.0 24.306847 8 GTGGTAT 6845 0.0 21.234335 1 GCAGAGT 43535 0.0 21.031366 9 TGGTATC 6620 0.0 20.904259 2 GAGTACT 25770 0.0 20.127872 12-13 CAGAGTA 42945 0.0 18.889486 10-11 GTACTTT 28670 0.0 17.993443 14-15 AGAGTAC 39925 0.0 17.676395 10-11 AGTACTT 28575 0.0 15.617627 12-13 ACTTTTT 33360 0.0 15.431662 16-17 TACATGG 27675 0.0 14.167812 2 TATACTG 5730 0.0 14.049638 5 >>END_MODULE