##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140162_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8687296 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.416251731263674 18.0 18.0 32.0 18.0 33.0 2 27.808951139687196 29.0 25.0 32.0 18.0 33.0 3 29.837806608638637 31.0 29.0 33.0 25.0 33.0 4 30.499649833504005 32.0 31.0 33.0 27.0 33.0 5 31.43871890632022 33.0 32.0 33.0 28.0 33.0 6 35.717341621604696 37.0 36.0 38.0 31.0 38.0 7 36.050474163652304 38.0 37.0 38.0 33.0 38.0 8 36.56844730512233 38.0 37.0 38.0 34.0 38.0 9 36.730998575391006 38.0 38.0 38.0 34.0 38.0 10-11 36.806936473673744 38.0 38.0 38.0 34.5 38.0 12-13 36.840002976760545 38.0 38.0 38.0 35.0 38.0 14-15 36.865027506832966 38.0 38.0 38.0 35.0 38.0 16-17 36.852394864869346 38.0 38.0 38.0 35.0 38.0 18-19 36.861635024292944 38.0 38.0 38.0 35.0 38.0 20-21 36.86227167691151 38.0 38.0 38.0 35.0 38.0 22-23 36.870176897023214 38.0 38.0 38.0 35.0 38.0 24-25 36.86560054581962 38.0 38.0 38.0 35.0 38.0 26-27 36.8167328997346 38.0 38.0 38.0 35.0 38.0 28-29 36.79622135657974 38.0 38.0 38.0 35.0 38.0 30-31 36.786700271887064 38.0 38.0 38.0 35.0 38.0 32-33 36.7687210502301 38.0 38.0 38.0 35.0 38.0 34-35 36.73860153598312 38.0 38.0 38.0 34.5 38.0 36-37 36.71195960270316 38.0 38.0 38.0 34.0 38.0 38-39 36.70130991481949 38.0 38.0 38.0 34.0 38.0 40-41 36.689196848303446 38.0 38.0 38.0 34.0 38.0 42-43 36.64247928022618 38.0 38.0 38.0 34.0 38.0 44-45 36.57707293687628 38.0 38.0 38.0 34.0 38.0 46-47 36.530387566478666 38.0 38.0 38.0 34.0 38.0 48-49 36.496083902595885 38.0 38.0 38.0 34.0 38.0 50-51 36.48214747726111 38.0 38.0 38.0 34.0 38.0 52-53 36.44785190145956 38.0 38.0 38.0 34.0 38.0 54-55 36.41968013605607 38.0 38.0 38.0 34.0 38.0 56-57 36.390716383147755 38.0 38.0 38.0 34.0 38.0 58-59 36.37208014314122 38.0 38.0 38.0 34.0 38.0 60-61 36.37586716463804 38.0 38.0 38.0 34.0 38.0 62-63 36.3633276940927 38.0 38.0 38.0 34.0 38.0 64-65 36.35227571954864 38.0 38.0 38.0 34.0 38.0 66-67 36.325532136396674 38.0 38.0 38.0 33.0 38.0 68-69 36.3185832018369 38.0 38.0 38.0 33.0 38.0 70-71 36.308055538782966 38.0 37.0 38.0 33.0 38.0 72-73 36.28596258469972 38.0 37.0 38.0 33.0 38.0 74-75 36.280030235490884 38.0 37.0 38.0 33.0 38.0 76-77 36.256440397420604 38.0 37.0 38.0 33.0 38.0 78-79 36.26980750221557 38.0 37.0 38.0 33.0 38.0 80-81 36.22921133467898 38.0 37.0 38.0 33.0 38.0 82-83 36.228891268732255 38.0 37.0 38.0 33.0 38.0 84-85 36.21481704903165 38.0 37.0 38.0 33.0 38.0 86-87 36.175871364452355 38.0 37.0 38.0 33.0 38.0 88-89 36.16922310408029 38.0 37.0 38.0 33.0 38.0 90-91 36.17149073747174 38.0 37.0 38.0 33.0 38.0 92-93 36.15261740503604 38.0 37.0 38.0 33.0 38.0 94-95 36.12938096304099 38.0 37.0 38.0 33.0 38.0 96-97 36.14066103999198 38.0 37.0 38.0 33.0 38.0 98-99 36.17301419439188 38.0 37.0 38.0 33.0 38.0 100-101 35.57993205588292 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 10.0 18 22.0 19 68.0 20 95.0 21 501.0 22 1924.0 23 5577.0 24 12602.0 25 23741.0 26 39743.0 27 60697.0 28 86503.0 29 116325.0 30 149689.0 31 191535.0 32 243998.0 33 321720.0 34 453536.0 35 737632.0 36 1770608.0 37 4470770.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 36.549842436587866 26.266274338988794 14.017537793117674 23.16634543130567 2 14.662352934676107 20.792096873411474 39.20895523762515 25.33659495428727 3 18.14157957528476 25.174409154598504 31.19022995624288 25.49378131387386 4 13.835156532021012 18.073713615836272 38.00807523998262 30.083054612160105 5 14.221899639558783 36.52530107107501 34.736130336907344 14.516668952458861 6 30.256745021696048 38.043437221432306 18.081449049278394 13.618368707593248 7 26.556974690398484 32.83081409911669 22.685551407480535 17.926659803004295 8 24.09146643558594 37.60431324085193 20.371114326022735 17.933105997539396 9 25.085676832008485 17.2800374247637 21.446466196155857 36.18781954707195 10-11 24.408194702252274 27.1048279640079 28.183748325356262 20.303229008383564 12-13 25.043550710569978 24.450413831752872 28.721229580721207 21.78480587695594 14-15 22.2266514229514 25.78960127524146 26.431694050714977 25.552053251092172 16-17 21.745028602686038 28.905893157088236 27.176753272825056 22.172324967400673 18-19 21.730858485770487 27.987914766574086 29.027369390889866 21.253857356765558 20-21 22.646303871447834 27.017265327681383 29.0109340226119 21.32549677825888 22-23 22.2785822573869 26.912257026011677 28.911040353768552 21.898120362832866 24-25 21.997078578703672 27.107482078146404 29.01904092971562 21.876398413434302 26-27 21.981090402306354 27.16462942313413 28.942043639189386 21.912236535370134 28-29 21.983630872512595 27.22519770359537 28.97636402293272 21.814807400959317 30-31 22.185916302749373 27.098690266596552 28.882470947515916 21.83292248313816 32-33 22.019124807698415 27.228432637439713 28.811785453485385 21.94065710137649 34-35 22.100498817141688 27.229795233093146 28.823243700977212 21.846462248787958 36-37 22.127498551238563 27.093315906602548 28.841446445739134 21.937739096419755 38-39 21.990553243765238 27.29160771995065 28.886046031311913 21.831793004972198 40-41 22.236179077051148 27.204958866936185 28.67338683849885 21.885475217513818 42-43 22.072734141860163 27.28090769777514 28.54793770910685 22.098420451257837 44-45 22.13005213826768 27.343890785112674 28.444720856364302 22.081336220255345 46-47 22.237175450233106 27.3111607046648 28.22630544254664 22.22535840255545 48-49 22.213656302621185 27.43971051200215 28.19230956711935 22.15432361825731 50-51 22.13776785892257 27.53554112400476 28.09167791734507 22.235013099727603 52-53 22.28814076747532 27.537689973212352 27.939168194193492 22.235001065118833 54-55 22.32666381837148 27.44682034362709 27.98113128643271 22.24538455156873 56-57 22.2536670208627 27.515801554181664 28.03242894535386 22.19810247960178 58-59 22.208148515648716 27.601415708882204 28.037044890879837 22.153390884589243 60-61 22.31096250761966 27.487429923698826 28.055316651517643 22.14629091716387 62-63 22.294613568452032 27.533054998170115 28.066894630858087 22.10543680251977 64-65 22.229133340256528 27.481946826780085 28.07170598650181 22.217213846461572 66-67 22.285432128302475 27.57637712663926 27.90180100751852 22.236389737539742 68-69 22.25876156018315 27.474980086439967 27.973360190234214 22.292898163142674 70-71 22.264140130224412 27.267621012714187 28.030254596538605 22.437984260522793 72-73 22.332044106490937 27.33684241643828 27.955480836553313 22.37563264051747 74-75 22.091876081602845 27.465187674305003 28.009328005660706 22.433608238431443 76-77 22.28035328610065 27.467902860445587 27.898844057756893 22.35289979569687 78-79 22.226988014703043 27.54578209154389 27.79237113204757 22.4348587617055 80-81 22.25882650902002 27.461750971952082 27.825636839670114 22.453785679357775 82-83 22.303109492612354 27.457662578893398 27.950142237462604 22.289085691031644 84-85 22.393277202492204 27.449514641200924 27.886436710084002 22.27077144622287 86-87 22.25538309832712 27.52833591694991 27.876412355917214 22.33986862880576 88-89 22.3222874929427 27.50298892232332 27.79639757908501 22.378326005648972 90-91 22.348865318484545 27.561284481713294 27.834172189317023 22.255678010485134 92-93 22.426865857823326 27.495425049834864 27.796178864377207 22.281530227964602 94-95 22.225567896341513 27.620702541600373 27.826358631479188 22.327370930578926 96-97 22.28204874341122 27.62541210439336 27.846150767742834 22.24638838445259 98-99 22.572148898427173 28.187428063607133 27.864404267510594 21.3760187704551 100-101 23.156121712872277 30.710894627117785 25.23497205488003 20.89801160512991 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2170.0 1 2066.0 2 2401.0 3 2947.5 4 3436.0 5 4435.0 6 5851.5 7 8157.5 8 10451.5 9 11900.5 10 11901.0 11 11303.0 12 12215.5 13 15210.0 14 21433.5 15 28854.0 16 34178.5 17 36436.5 18 35668.5 19 33103.5 20 30319.5 21 28183.0 22 28540.5 23 32775.5 24 40901.5 25 53651.5 26 69833.0 27 87573.0 28 105687.0 29 123553.5 30 140843.5 31 158817.5 32 177726.5 33 197961.0 34 218202.5 35 235039.5 36 254854.5 37 273116.0 38 284921.5 39 296152.0 40 309162.0 41 321060.0 42 327242.0 43 332100.0 44 339226.0 45 347155.5 46 351964.5 47 353671.5 48 353820.0 49 352035.0 50 347157.5 51 339904.5 52 326567.5 53 309198.5 54 293433.0 55 274776.0 56 253303.5 57 230142.0 58 205282.5 59 178937.5 60 151428.0 61 124114.5 62 98080.5 63 76245.0 64 58950.5 65 44930.0 66 33763.0 67 24960.0 68 18392.0 69 13591.5 70 9727.5 71 6652.5 72 4623.0 73 3046.0 74 1890.5 75 1156.0 76 709.5 77 417.5 78 251.0 79 163.0 80 109.0 81 69.5 82 45.5 83 33.0 84 25.0 85 21.0 86 17.5 87 11.0 88 6.5 89 4.5 90 3.5 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0029007875407952026 4 0.0 5 0.037031085391818125 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.755530834911116E-6 12-13 1.0935508586331121E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.7818547670762417E-5 46-47 9.697787024863808E-4 48-49 1.2065618140319037E-5 50-51 8.507887845133105E-5 52-53 0.0014927347255001549 54-55 7.329061045042808E-4 56-57 0.004057362167405647 58-59 0.00888271287177607 60-61 0.011552576886052664 62-63 0.006556174707521937 64-65 0.00835701527313277 66-67 0.005748889165734997 68-69 0.0027883081365171264 70-71 0.004668498877625989 72-73 0.0030486574995321203 74-75 0.001360215639519385 76-77 0.0021453453303196274 78-79 8.008277029377142E-4 80-81 4.865218709054645E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.9627141021226317E-4 94-95 2.939090148801726E-4 96-97 1.1901649233849927E-4 98-99 5.830443491917049E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 95.0 20-21 265.0 22-23 583.0 24-25 908.0 26-27 2021.0 28-29 4747.0 30-31 13298.0 32-33 17057.0 34-35 24138.0 36-37 39764.0 38-39 48517.0 40-41 47728.0 42-43 54319.0 44-45 64703.0 46-47 65391.0 48-49 62024.0 50-51 55498.0 52-53 53717.0 54-55 57814.0 56-57 60761.0 58-59 61040.0 60-61 60322.0 62-63 58085.0 64-65 60263.0 66-67 64853.0 68-69 67097.0 70-71 66213.0 72-73 61688.0 74-75 63432.0 76-77 66008.0 78-79 70584.0 80-81 70564.0 82-83 66585.0 84-85 65960.0 86-87 67867.0 88-89 72632.0 90-91 74548.0 92-93 72721.0 94-95 77757.0 96-97 128315.0 98-99 738166.0 100-101 5879248.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.38229025402495 #Duplication Level Percentage of deduplicated Percentage of total 1 88.82798575810618 74.06680891162806 2 7.660699586123489 12.775333528780752 3 1.8842146814096656 4.713304063985876 4 0.715118661880616 2.3851292732399783 5 0.3362889700517888 1.402027225504268 6 0.19876737377709552 0.9944207311987228 7 0.10667209848311623 0.6226194714407594 8 0.06879233705164421 0.45888500922343306 9 0.047033117649902256 0.3529556160692268 >10 0.15116392431634942 1.918372724554313 >50 0.002609848053440389 0.14467981560301538 >100 5.576811501852489E-4 0.08872928332764715 >500 4.798136831510477E-5 0.025064911080372215 >1k 4.798057818320226E-5 0.051669434363682924 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1511061669822232E-5 0.0 1.1511061669822232E-5 0.0 3 0.0 1.1511061669822232E-5 0.0 1.1511061669822232E-5 0.0 4 0.0 9.208849335857786E-5 0.0 1.1511061669822232E-5 0.0 5 0.0 9.208849335857786E-5 0.0 1.1511061669822232E-5 0.0 6 1.2662167836804456E-4 9.208849335857786E-5 0.0 1.1511061669822232E-5 1.1511061669822232E-5 7 1.2662167836804456E-4 9.208849335857786E-5 0.0 1.1511061669822232E-5 1.1511061669822232E-5 8 1.2662167836804456E-4 9.208849335857786E-5 0.0 1.1511061669822232E-5 1.1511061669822232E-5 9 1.2662167836804456E-4 1.6115486337751124E-4 0.0 5.7555308349111164E-5 1.1511061669822232E-5 10-11 1.49643801707689E-4 1.6115486337751124E-4 0.0 6.331083918402228E-5 1.1511061669822232E-5 12-13 1.6115486337751124E-4 1.7266592504733348E-4 0.0 6.90663700189334E-5 1.1511061669822232E-5 14-15 1.6691039421242235E-4 2.1871017172662242E-4 0.0 6.90663700189334E-5 1.7266592504733347E-5 16-17 1.9568804838697795E-4 2.2446570256153355E-4 0.0 9.208849335857786E-5 4.604424667928893E-5 18-19 2.071991100568002E-4 2.705099492408225E-4 0.0 1.035995550284001E-4 4.604424667928893E-5 20-21 2.071991100568002E-4 3.223097267550225E-4 0.0 1.0935508586331121E-4 4.604424667928893E-5 22-23 2.1871017172662242E-4 3.5108738092957806E-4 0.0 1.2662167836804456E-4 5.179977751420005E-5 24-25 2.5324335673608913E-4 3.913760967739559E-4 0.0 1.6115486337751124E-4 6.90663700189334E-5 26-27 2.935320725804669E-4 4.259092817834226E-4 0.0 2.1871017172662242E-4 6.90663700189334E-5 28-29 3.107986650852003E-4 4.259092817834226E-4 0.0 3.741095042692226E-4 6.90663700189334E-5 30-31 3.165541959201114E-4 4.4317587428815595E-4 0.0 0.0010705287352934675 7.482190085384452E-5 32-33 3.223097267550225E-4 4.4893140512306705E-4 0.0 0.003079208996677447 8.057743168875562E-5 34-35 3.338207884248447E-4 4.719535284627115E-4 0.0 0.005703731057396916 8.057743168875562E-5 36-37 3.4533185009466696E-4 4.949756518023559E-4 0.0 0.009749869234339431 8.057743168875562E-5 38-39 3.4533185009466696E-4 5.064867134721783E-4 0.0 0.015643532809288416 8.057743168875562E-5 40-41 3.568429117644892E-4 5.295088368118227E-4 0.0 0.02238325941696933 8.057743168875562E-5 42-43 3.568429117644892E-4 5.46775429316556E-4 0.0 0.02892154244542836 8.057743168875562E-5 44-45 3.6835397343431143E-4 6.388639226751339E-4 0.0 0.03625408872910512 8.057743168875562E-5 46-47 3.798650351041337E-4 6.906637001893339E-4 0.0 0.04448449782302802 8.633296252366674E-5 48-49 3.798650351041337E-4 6.964192310242451E-4 0.0 0.05269188479361127 9.208849335857786E-5 50-51 4.028871584437781E-4 7.712411318780896E-4 0.0 0.06172806820442173 9.208849335857786E-5 52-53 4.143982201136004E-4 7.712411318780896E-4 0.0 0.069998766014189 1.2662167836804456E-4 54-55 4.143982201136004E-4 7.712411318780896E-4 0.0 0.07835004125564501 1.6115486337751124E-4 56-57 4.143982201136004E-4 7.712411318780896E-4 0.0 0.08453723690317447 1.6115486337751124E-4 58-59 4.143982201136004E-4 7.827521935479118E-4 0.0 0.08939490492783946 1.6115486337751124E-4 60-61 4.374203434532448E-4 8.115298477224674E-4 0.0 0.09459790480259911 1.6115486337751124E-4 62-63 4.4893140512306705E-4 8.40307501897023E-4 0.0 0.09917930734718836 1.6115486337751124E-4 64-65 4.4893140512306705E-4 9.43907056925423E-4 0.0 0.10382402073096163 1.6115486337751124E-4 66-67 4.4893140512306705E-4 9.496625877603341E-4 0.0 0.10840542327555087 1.6691039421242235E-4 68-69 4.604424667928893E-4 9.726847110999785E-4 0.0 0.1131307140910129 1.7266592504733348E-4 70-71 4.8346459013253373E-4 9.957068344396231E-4 0.0 0.11828191418825834 1.8417698671715572E-4 72-73 5.410198984816449E-4 0.0010072178961094452 0.0 0.12200574263844584 1.9568804838697795E-4 74-75 5.410198984816449E-4 0.001035995550284001 0.0 0.12506192951178363 1.9568804838697795E-4 76-77 5.410198984816449E-4 0.0010993063894680231 0.0 0.1280317834225978 1.9568804838697795E-4 78-79 5.410198984816449E-4 0.001139595105312401 0.0 0.13074263844584091 1.9568804838697795E-4 80-81 5.525309601514672E-4 0.001139595105312401 0.0 0.13194554439033734 2.0144357922188908E-4 82-83 5.640420218212894E-4 0.001139595105312401 0.0 0.13247505322714917 2.1871017172662242E-4 84-85 5.697975526562005E-4 0.0011683727594869566 0.0 0.1329182291014373 2.1871017172662242E-4 86-87 5.870641451609338E-4 0.0011741282903218677 0.0 0.13313693927316395 2.1871017172662242E-4 88-89 5.98575206830756E-4 0.0012547057220106234 0.0 0.1332290277665225 2.1871017172662242E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11305 0.0 53.365566 1 GTATCAA 21155 0.0 36.207756 1 TCAACGC 26255 0.0 31.04544 4 ATCAACG 26510 0.0 30.649427 3 TATCAAC 26335 0.0 30.539282 2 CAACGCA 27270 0.0 29.858015 5 AACGCAG 28360 0.0 28.731686 6 ACGCAGA 33700 0.0 24.204756 7 CGCAGAG 34625 0.0 23.54557 8 TGGTATC 5500 0.0 23.09274 2 GTGGTAT 5525 0.0 22.279703 1 GCAGAGT 39715 0.0 20.582638 9 GAGTACT 22010 0.0 19.932827 12-13 CAGAGTA 38980 0.0 18.734234 10-11 GTACTTT 23940 0.0 18.16252 14-15 AGAGTAC 36425 0.0 17.010344 10-11 GTACATG 28345 0.0 15.9132 1 TACATGG 28060 0.0 15.904315 2 ACATGGG 28445 0.0 15.490261 3 ACTTTTT 28225 0.0 15.467541 16-17 >>END_MODULE