##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140161_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8399343 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.83685854953179 31.0 18.0 33.0 18.0 33.0 2 30.082494785604066 32.0 28.0 33.0 25.0 33.0 3 30.770017369215665 33.0 30.0 33.0 27.0 33.0 4 31.41410524608889 33.0 31.0 33.0 28.0 34.0 5 31.674476920397225 33.0 32.0 33.0 30.0 34.0 6 34.55483065758834 37.0 34.0 38.0 28.0 38.0 7 35.68355048722263 38.0 36.0 38.0 31.0 38.0 8 35.613380713229596 38.0 36.0 38.0 31.0 38.0 9 36.28066290422953 38.0 37.0 38.0 33.0 38.0 10-11 36.56003529085549 38.0 37.5 38.0 34.0 38.0 12-13 36.66649861780856 38.0 38.0 38.0 34.0 38.0 14-15 36.680041879466046 38.0 38.0 38.0 34.0 38.0 16-17 36.685141683105456 38.0 38.0 38.0 34.0 38.0 18-19 36.7107464238572 38.0 38.0 38.0 34.0 38.0 20-21 36.73259724777593 38.0 38.0 38.0 34.0 38.0 22-23 36.751265155848124 38.0 38.0 38.0 34.0 38.0 24-25 36.75271821470833 38.0 38.0 38.0 34.0 38.0 26-27 36.70844488994729 38.0 38.0 38.0 34.0 38.0 28-29 36.693794942844974 38.0 38.0 38.0 34.0 38.0 30-31 36.68556823611328 38.0 38.0 38.0 34.0 38.0 32-33 36.66752437038199 38.0 38.0 38.0 34.0 38.0 34-35 36.634708839003466 38.0 38.0 38.0 34.0 38.0 36-37 36.604725147402796 38.0 38.0 38.0 34.0 38.0 38-39 36.59035285934624 38.0 38.0 38.0 34.0 38.0 40-41 36.5769137354325 38.0 38.0 38.0 34.0 38.0 42-43 36.5386200131335 38.0 38.0 38.0 34.0 38.0 44-45 36.466196407782434 38.0 38.0 38.0 34.0 38.0 46-47 36.41052449980567 38.0 38.0 38.0 34.0 38.0 48-49 36.36800139390114 38.0 38.0 38.0 34.0 38.0 50-51 36.349699206222645 38.0 38.0 38.0 33.5 38.0 52-53 36.3112102801654 38.0 38.0 38.0 33.0 38.0 54-55 36.27628781896572 38.0 38.0 38.0 33.0 38.0 56-57 36.244449159026914 38.0 37.5 38.0 33.0 38.0 58-59 36.21974730391375 38.0 37.0 38.0 33.0 38.0 60-61 36.224826746477156 38.0 37.0 38.0 33.0 38.0 62-63 36.211557705048136 38.0 37.0 38.0 33.0 38.0 64-65 36.20566211103453 38.0 37.0 38.0 33.0 38.0 66-67 36.17884836243543 38.0 37.0 38.0 33.0 38.0 68-69 36.17157148773474 38.0 37.0 38.0 33.0 38.0 70-71 36.16035124175397 38.0 37.0 38.0 33.0 38.0 72-73 36.141877347570755 38.0 37.0 38.0 33.0 38.0 74-75 36.13590705139087 38.0 37.0 38.0 33.0 38.0 76-77 36.11031413269865 38.0 37.0 38.0 33.0 38.0 78-79 36.12490884909356 38.0 37.0 38.0 33.0 38.0 80-81 36.07516986009722 38.0 37.0 38.0 33.0 38.0 82-83 36.07293309376939 38.0 37.0 38.0 33.0 38.0 84-85 36.05968756471922 38.0 37.0 38.0 33.0 38.0 86-87 36.02377080220233 38.0 37.0 38.0 32.0 38.0 88-89 36.017016317882984 38.0 37.0 38.0 32.0 38.0 90-91 36.01798785278142 38.0 37.0 38.0 32.0 38.0 92-93 36.000043787201854 38.0 37.0 38.0 31.5 38.0 94-95 35.97793016663374 38.0 37.0 38.0 31.0 38.0 96-97 35.98859658997365 38.0 37.0 38.0 31.5 38.0 98-99 36.0385225100631 38.0 37.0 38.0 33.0 38.0 100-101 35.4716533507324 38.0 35.5 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 7.0 19 35.0 20 102.0 21 532.0 22 2171.0 23 6616.0 24 14780.0 25 27760.0 26 45509.0 27 67407.0 28 94295.0 29 126150.0 30 162315.0 31 203601.0 32 257298.0 33 331243.0 34 455276.0 35 704089.0 36 1519230.0 37 4380926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.27805496215597 17.75638880326711 13.888014812587127 21.07754142198979 2 15.701799533606378 20.21359289649202 41.996141841094 22.0884657288076 3 19.53864828197116 25.945292394405772 28.625547162375586 25.890512161247482 4 13.293706424419149 18.308872491574636 37.018121536410646 31.37929954759557 5 15.00805367017255 36.747139053368606 34.09955155754313 14.145255718915713 6 31.141864310101397 36.57183663055551 18.06644876867155 14.219850290671543 7 27.759790259785795 32.43845381716165 21.72628263901117 18.075473284041383 8 25.099105965788038 36.37430927633268 19.8806263775631 18.645958380316173 9 25.91982491963955 17.314568532324493 20.892145969035912 35.87346057900005 10-11 25.22773062296245 26.626357955994767 27.20879044996677 20.93712097107601 12-13 25.898708373475415 24.078748167116146 27.7232225134094 22.29932094599904 14-15 22.881742060063505 25.15083620230773 25.964822486711164 26.0025992509176 16-17 22.294178247036704 28.43724205571793 26.423382162152443 22.84519753509292 18-19 22.29555335458976 27.27063890592395 28.51548627077142 21.918321468714876 20-21 23.29955545692166 26.249966365788303 28.66485514191494 21.785623035375096 22-23 23.07049628872902 26.133789115986445 28.46718674467837 22.32852785060616 24-25 22.720617641337846 26.28932039840753 28.690627823069942 22.299434137184683 26-27 22.52826073286158 26.340380989312635 28.743174501241953 22.388183776583833 28-29 22.61866274255187 26.41540107828565 28.626569948245788 22.339366230916692 30-31 22.941598670585964 26.099493658492552 28.56793608518477 22.390971585736715 32-33 22.683547141032793 26.227457476272026 28.541838877442522 22.547156505252662 34-35 22.896156475790256 26.36741243081577 28.460023052078693 22.276408041315285 36-37 22.965075537009564 26.182367013009678 28.36885110135251 22.483706348628246 38-39 22.598793894558735 26.496923103602732 28.455299093979797 22.44898390785873 40-41 22.90575995776041 26.3183038722544 28.342685471583078 22.43325069840211 42-43 22.73110926183585 26.416793131654696 28.096716606883216 22.755380999626233 44-45 22.61791194543535 26.492277547065058 28.08362539795557 22.806185109544028 46-47 22.82372538244462 26.475735737669297 27.858920442842845 22.841618437043234 48-49 22.926660638759653 26.708333398626955 27.56733835519625 22.797667607417146 50-51 22.85427107741468 26.792925097179783 27.571051954935623 22.78175187046992 52-53 23.16748292823069 26.706779328702318 27.359941259194315 22.76579648387268 54-55 23.102048268426827 26.60014149035267 27.401480572155695 22.89632966906481 56-57 23.0619240687258 26.823875827012944 27.290279932699413 22.82392017156184 58-59 22.903208115548104 26.732444376946844 27.550567223229816 22.813780284275236 60-61 22.99523090066076 26.708114022766328 27.444072657649986 22.852582418922925 62-63 22.919778849627118 26.767852278900538 27.564072442557507 22.748296428914834 64-65 22.968262415339353 26.69104284885738 27.510451560407063 22.83024317539621 66-67 23.014389619034894 26.858764882940566 27.161458202531552 22.965387295492985 68-69 22.955892766811576 26.84106587272111 27.295004506212184 22.90803685425513 70-71 22.99327735264018 26.595868437188376 27.271529000639344 23.139325209532103 72-73 22.96014929599869 26.67970382985188 27.1388919544241 23.22125491972533 74-75 22.79604503942983 26.72096535190403 27.263639935486655 23.219349673179483 76-77 23.05571768332917 26.779042685597716 27.021440822366838 23.143798808706283 78-79 22.939236805684164 26.758035763512396 27.114129966113865 23.188597464689575 80-81 23.0007806073545 26.676453172625596 27.136328997942606 23.186437222077295 82-83 23.165591803536753 26.622720265094685 27.192879791642916 23.018808139725643 84-85 23.180984673878974 26.72948462600646 27.08405430308361 23.005476397030957 86-87 23.035878901703548 26.871774390522756 27.041542342950674 23.050804364823023 88-89 23.186318234707546 26.78942099814709 26.906795272998256 23.11746549414711 90-91 23.14823869427314 26.852662594344263 26.94801893006526 23.051079781317338 92-93 23.249305592109334 26.88561108767871 26.985994414354515 22.87908890585744 94-95 23.027212049972793 27.085883993993825 27.009085640882446 22.877818315150936 96-97 23.040783388410592 27.01104158978834 27.046097716578455 22.90207730522261 98-99 23.359541288878322 27.54580664394531 27.130602316703 21.96404975047337 100-101 24.015370452442124 29.99668579923202 24.464353924502127 21.523589823823734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2613.0 1 2313.0 2 2612.5 3 3351.5 4 3856.5 5 5537.0 6 7508.0 7 10219.0 8 13690.0 9 15235.5 10 14126.5 11 12554.5 12 12986.5 13 15793.0 14 21976.0 15 29817.0 16 36658.5 17 41711.0 18 43194.5 19 40725.5 20 36199.0 21 31377.0 22 28640.0 23 29860.0 24 34653.5 25 43601.5 26 55929.0 27 69420.5 28 84062.5 29 99206.0 30 112946.0 31 127149.5 32 143336.5 33 160175.5 34 176046.5 35 190978.5 36 209514.0 37 226197.0 38 238240.0 39 250291.0 40 263162.0 41 275240.0 42 284110.5 43 292499.5 44 302540.0 45 316631.5 46 331794.0 47 347292.5 48 357122.5 49 360325.5 50 359314.5 51 357497.0 52 343079.5 53 321403.0 54 309759.0 55 296692.5 56 281360.0 57 261239.0 58 237510.0 59 210197.5 60 180181.5 61 152743.5 62 125519.5 63 104261.0 64 87172.0 65 68528.5 66 53154.0 67 37464.5 68 24473.0 69 18667.0 70 13936.5 71 9389.5 72 6612.0 73 4442.0 74 2869.0 75 1855.5 76 1158.5 77 675.0 78 398.0 79 242.5 80 152.0 81 98.5 82 67.0 83 47.5 84 32.0 85 23.0 86 17.0 87 11.5 88 7.0 89 4.0 90 3.0 91 2.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0039050673368143203 4 0.0 5 0.03775295282023844 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.952846550021829E-6 12-13 1.3096262410048024E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 2.4645497621863514E-5 46-47 9.943939796405292E-4 48-49 6.26818714500122E-6 50-51 9.476322618244764E-5 52-53 0.0014059018742834909 54-55 8.258123592998187E-4 56-57 0.003996006056398341 58-59 0.008910187387795237 60-61 0.011575889997914379 62-63 0.006583384328751148 64-65 0.008619648322332878 66-67 0.005718954631345403 68-69 0.0028173589307170224 70-71 0.004582111436950147 72-73 0.0028689834338566874 74-75 0.0014225375891679522 76-77 0.0018274048981032729 78-79 7.351130420080348E-4 80-81 4.7118934186842854E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.8229384446096736E-4 94-95 2.2282614082566E-4 96-97 1.1680170760981812E-4 98-99 4.90954090400101E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 85.0 20-21 353.0 22-23 790.0 24-25 1211.0 26-27 2526.0 28-29 5488.0 30-31 14854.0 32-33 18971.0 34-35 25948.0 36-37 41581.0 38-39 48149.0 40-41 49743.0 42-43 57610.0 44-45 69152.0 46-47 69765.0 48-49 64178.0 50-51 57065.0 52-53 48536.0 54-55 52087.0 56-57 51857.0 58-59 59617.0 60-61 58426.0 62-63 57192.0 64-65 61313.0 66-67 65718.0 68-69 67171.0 70-71 67159.0 72-73 61923.0 74-75 63279.0 76-77 66506.0 78-79 69594.0 80-81 70997.0 82-83 66871.0 84-85 66172.0 86-87 68603.0 88-89 73133.0 90-91 74805.0 92-93 74233.0 94-95 80656.0 96-97 130819.0 98-99 734768.0 100-101 5580439.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.58842820996098 #Duplication Level Percentage of deduplicated Percentage of total 1 90.02250415072261 76.14862129634315 2 6.976137036550865 11.802009337982659 3 1.6330978723570821 4.144235464071512 4 0.5896699047315688 1.9951700161584336 5 0.278305837164124 1.1770726663685298 6 0.15512059394582933 0.7872844334923976 7 0.08722108498544487 0.5164526139980345 8 0.057301651422072296 0.38776453021025376 9 0.037194942705521365 0.28316355667376447 >10 0.15700843849084997 2.1760197850292515 >50 0.004659913353136001 0.26831726237422315 >100 0.0017025683470931789 0.2391607394565137 >500 5.06701492938885E-5 0.03979651542628375 >1k 2.5335074563275703E-5 0.03493178241500138 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.952846550021829E-5 0.0 0.0 0.0 3 0.0 5.952846550021829E-5 0.0 0.0 0.0 4 0.0 1.666797034006112E-4 0.0 0.0 0.0 5 0.0 1.666797034006112E-4 0.0 0.0 0.0 6 2.3811386200087318E-5 1.666797034006112E-4 0.0 0.0 0.0 7 2.3811386200087318E-5 1.666797034006112E-4 0.0 0.0 0.0 8 2.3811386200087318E-5 2.262081689008295E-4 0.0 1.1905693100043659E-5 1.1905693100043659E-5 9 3.571707930013097E-5 3.4526509990126606E-4 0.0 1.1905693100043659E-5 1.1905693100043659E-5 10-11 3.571707930013097E-5 3.4526509990126606E-4 0.0 1.1905693100043659E-5 1.1905693100043659E-5 12-13 5.952846550021829E-5 3.4526509990126606E-4 0.0 1.1905693100043659E-5 1.1905693100043659E-5 14-15 6.548131205024012E-5 3.9288787230144074E-4 0.0 1.1905693100043659E-5 1.785853965006549E-5 16-17 1.1905693100043658E-4 3.9288787230144074E-4 0.0 1.1905693100043659E-5 3.571707930013097E-5 18-19 1.250097775504584E-4 4.047935654014844E-4 0.0 1.1905693100043659E-5 5.952846550021829E-5 20-21 1.3096262410048024E-4 4.3455779815159356E-4 0.0 1.1905693100043659E-5 7.143415860026195E-5 22-23 1.3096262410048024E-4 4.8813341710179E-4 0.0 1.785853965006549E-5 7.143415860026195E-5 24-25 2.262081689008295E-4 5.476618826020083E-4 0.0 6.548131205024012E-5 7.143415860026195E-5 26-27 3.095480206011351E-4 5.714732688020956E-4 0.0 1.7263254995063303E-4 7.143415860026195E-5 28-29 3.095480206011351E-4 5.714732688020956E-4 0.0 5.833789619021393E-4 7.143415860026195E-5 30-31 3.095480206011351E-4 6.905301998025321E-4 0.0 0.0019942035942573126 7.143415860026195E-5 32-33 3.095480206011351E-4 6.905301998025321E-4 0.0 0.004839664245167748 7.143415860026195E-5 34-35 3.155008671511569E-4 8.33398517003056E-4 0.0 0.008012531456329382 8.33398517003056E-5 36-37 3.2145371370117875E-4 9.7626683420358E-4 0.0 0.013876085308100885 8.33398517003056E-5 38-39 3.2145371370117875E-4 9.7626683420358E-4 0.0 0.025115059594542098 8.33398517003056E-5 40-41 3.333594068012224E-4 0.001119135151404104 0.0 0.06474911192458743 9.524554480034927E-5 42-43 3.393122533512442E-4 0.0011369936910541694 0.0 0.07557733979907715 9.524554480034927E-5 44-45 3.4526509990126606E-4 0.0012679563151546495 0.0 0.0920071962771374 9.524554480034927E-5 46-47 3.4526509990126606E-4 0.0013810603996050642 0.0 0.10991931154615307 9.524554480034927E-5 48-49 3.4526509990126606E-4 0.0013810603996050642 0.0 0.12724804785326663 9.524554480034927E-5 50-51 3.5717079300130977E-4 0.001500117330605501 0.0 0.14405888651052828 1.0715123790039293E-4 52-53 3.5717079300130977E-4 0.0015120230237055446 0.0 0.17460294215869027 1.1310408445041475E-4 54-55 3.690764861013534E-4 0.0015179758702555664 0.0 0.25238283518127547 1.250097775504584E-4 56-57 3.809821792013971E-4 0.0015239287168055883 0.0 0.3394491688218948 1.428683172005239E-4 58-59 3.809821792013971E-4 0.00152988156335561 0.0 0.43350414431223966 1.428683172005239E-4 60-61 3.9884071885146254E-4 0.001565598642655741 0.0 0.45444625847521647 1.4882116375054572E-4 62-63 4.047935654014844E-4 0.001631079954705981 0.0 0.467691342049015 1.5477401030056755E-4 64-65 4.047935654014844E-4 0.001976345054607247 0.0 0.4782874089080539 1.5477401030056755E-4 66-67 4.1669925850152805E-4 0.0019942035942573126 0.0 0.48511532390092893 1.6072685685058937E-4 68-69 4.1669925850152805E-4 0.0020477792132075094 0.0 0.4918420405024536 1.666797034006112E-4 70-71 4.1669925850152805E-4 0.0020894491390576623 0.0 0.4978067927455755 1.666797034006112E-4 72-73 4.2265210505154985E-4 0.002119213371807771 0.0 0.5017356714685899 1.666797034006112E-4 74-75 4.286049516015717E-4 0.002172788990757968 0.0 0.505039501303852 1.666797034006112E-4 76-77 4.286049516015717E-4 0.002268034535558317 0.0 0.5078254334892622 1.7263254995063303E-4 78-79 4.286049516015717E-4 0.002333515847608557 0.0 0.5103434875799214 1.7858539650065489E-4 80-81 4.286049516015717E-4 0.002333515847608557 0.0 0.5115161983502757 1.9049108960069854E-4 82-83 4.286049516015717E-4 0.002333515847608557 0.0 0.5120519545397777 2.0834962925076402E-4 84-85 4.286049516015717E-4 0.002333515847608557 0.0 0.5124924651844793 2.262081689008295E-4 86-87 4.286049516015717E-4 0.002369232926908688 0.0 0.51268890912063 2.3811386200087316E-4 88-89 4.4051064470161536E-4 0.0024644784717090373 0.0 0.5127424847395802 2.3811386200087316E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13265 0.0 55.982414 1 GTATCAA 25510 0.0 40.394314 1 TCAACGC 30105 0.0 33.709026 4 ATCAACG 30215 0.0 33.602055 3 TATCAAC 30795 0.0 33.180344 2 CAACGCA 31045 0.0 32.688362 5 AACGCAG 31835 0.0 32.00173 6 GTGGTAT 5970 0.0 29.62698 1 TGGTATC 5650 0.0 29.233313 2 ACGCAGA 36055 0.0 28.280174 7 CGCAGAG 39315 0.0 25.891096 8 GCAGAGT 42590 0.0 23.900173 9 GAGTACT 25400 0.0 22.340736 12-13 GTACATG 30085 0.0 21.686426 1 TACATGG 30005 0.0 21.253016 2 CAGAGTA 41260 0.0 21.241491 10-11 ACATGGG 30035 0.0 20.640013 3 GTACTTT 28210 0.0 20.08507 14-15 CATGGGG 23310 0.0 19.247818 4 AGAGTAC 38810 0.0 18.8587 10-11 >>END_MODULE