##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140160_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11665716 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.640104902262323 30.0 18.0 33.0 18.0 33.0 2 30.041405345372713 32.0 28.0 33.0 25.0 33.0 3 30.737675081409492 33.0 30.0 33.0 27.0 33.0 4 31.394294957977717 33.0 31.0 33.0 28.0 33.0 5 31.663910556368766 33.0 32.0 33.0 30.0 34.0 6 34.56355435020019 37.0 34.0 38.0 28.0 38.0 7 35.70060311771691 38.0 36.0 38.0 31.0 38.0 8 35.58920498321749 38.0 36.0 38.0 31.0 38.0 9 36.26497713470823 38.0 37.0 38.0 33.0 38.0 10-11 36.55211343221453 38.0 37.5 38.0 34.0 38.0 12-13 36.66731660534167 38.0 38.0 38.0 34.0 38.0 14-15 36.67321337155816 38.0 38.0 38.0 34.0 38.0 16-17 36.671222366462544 38.0 38.0 38.0 34.0 38.0 18-19 36.700870653802994 38.0 38.0 38.0 34.0 38.0 20-21 36.72447952693351 38.0 38.0 38.0 34.0 38.0 22-23 36.74329501508281 38.0 38.0 38.0 34.0 38.0 24-25 36.74496106405871 38.0 38.0 38.0 34.0 38.0 26-27 36.69867696008467 38.0 38.0 38.0 34.0 38.0 28-29 36.68445837223936 38.0 38.0 38.0 34.0 38.0 30-31 36.67816928958611 38.0 38.0 38.0 34.0 38.0 32-33 36.662705737103785 38.0 38.0 38.0 34.0 38.0 34-35 36.63010490664111 38.0 38.0 38.0 34.0 38.0 36-37 36.60156765332839 38.0 38.0 38.0 34.0 38.0 38-39 36.58942219182126 38.0 38.0 38.0 34.0 38.0 40-41 36.57904628332744 38.0 38.0 38.0 34.0 38.0 42-43 36.54199115190282 38.0 38.0 38.0 34.0 38.0 44-45 36.47624269749157 38.0 38.0 38.0 34.0 38.0 46-47 36.42776271517698 38.0 38.0 38.0 34.0 38.0 48-49 36.39208850815619 38.0 38.0 38.0 34.0 38.0 50-51 36.376430537800786 38.0 38.0 38.0 34.0 38.0 52-53 36.34860770787529 38.0 38.0 38.0 33.5 38.0 54-55 36.31405102848278 38.0 38.0 38.0 33.0 38.0 56-57 36.278550607868226 38.0 37.5 38.0 33.0 38.0 58-59 36.25021133914518 38.0 37.0 38.0 33.0 38.0 60-61 36.24827572454473 38.0 37.0 38.0 33.0 38.0 62-63 36.23089345672245 38.0 37.0 38.0 33.0 38.0 64-65 36.21990489512939 38.0 37.0 38.0 33.0 38.0 66-67 36.19146936491845 38.0 37.0 38.0 33.0 38.0 68-69 36.18023653854315 38.0 37.0 38.0 33.0 38.0 70-71 36.165975740713094 38.0 37.0 38.0 33.0 38.0 72-73 36.144206427195925 38.0 37.0 38.0 33.0 38.0 74-75 36.13477852930145 38.0 37.0 38.0 33.0 38.0 76-77 36.113212883611666 38.0 37.0 38.0 33.0 38.0 78-79 36.12373087897721 38.0 37.0 38.0 33.0 38.0 80-81 36.075756543890975 38.0 37.0 38.0 33.0 38.0 82-83 36.07460599041569 38.0 37.0 38.0 33.0 38.0 84-85 36.06168057393033 38.0 37.0 38.0 33.0 38.0 86-87 36.01944010883669 38.0 37.0 38.0 31.5 38.0 88-89 36.008644380372296 38.0 37.0 38.0 31.5 38.0 90-91 36.00768611520806 38.0 37.0 38.0 31.5 38.0 92-93 35.98752956474972 38.0 37.0 38.0 31.0 38.0 94-95 35.96414984568146 38.0 37.0 38.0 31.0 38.0 96-97 35.97304567364165 38.0 37.0 38.0 31.5 38.0 98-99 36.002579369002405 38.0 37.0 38.0 32.0 38.0 100-101 35.38326080320282 38.0 35.5 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 4.0 17 12.0 18 21.0 19 54.0 20 164.0 21 888.0 22 3351.0 23 9527.0 24 21339.0 25 39038.0 26 62937.0 27 93272.0 28 130116.0 29 171615.0 30 220350.0 31 278903.0 32 353244.0 33 461999.0 34 638064.0 35 996653.0 36 2156371.0 37 6027794.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.91061397345864 18.198377193478738 14.43900228670062 20.452006546362007 2 15.129830007862354 20.210135408748165 43.43613371009546 21.223900873294017 3 19.31059023600199 26.563813325403252 28.908865734333233 25.216730704261526 4 12.742604054478953 18.772941155090695 38.29009723878071 30.194357551649638 5 14.285705710310156 37.48138494148744 34.71207823375488 13.520831114447516 6 30.036621841299755 37.625611664127604 18.6930146422217 13.64475185235094 7 27.143597529718704 33.00012618171058 22.15610254869911 17.7001737398716 8 24.2274970520455 37.40408218406826 20.37844912391147 17.989971639974776 9 25.465123615215727 18.052668177418344 21.26480706370702 35.217401143658904 10-11 24.50974072313613 27.18501180596303 27.97283749860167 20.33240997229917 12-13 25.35418677100672 24.574778072730723 28.49592641334716 21.575108742915397 14-15 22.35998297746932 25.981166778840098 26.62393061102853 25.03491963266205 16-17 21.548351597107285 29.208005749497072 27.235880763769664 22.007761889625975 18-19 21.46599917227541 28.10630311932847 29.398354117312646 21.029343591083478 20-21 22.53402652139264 27.040722076182522 29.46447951369316 20.96077188873168 22-23 22.171032154884944 26.97596237674424 29.30150158706171 21.551503881309106 24-25 21.849752809258653 27.14109302658748 29.41903098484257 21.590123179311295 26-27 21.762262792391027 27.298590444278915 29.3433942272011 21.59575253612896 28-29 21.627989654460137 27.409992927491423 29.352301415583455 21.60971600246499 30-31 21.994664607190202 27.204199248675554 29.298267228501977 21.50286891563227 32-33 21.722255694904582 27.322008921841718 29.243163395397904 21.712571987855796 34-35 21.88316589758428 27.39875959727014 29.256281549335306 21.461792955810274 36-37 21.87343281564344 27.31717969860664 29.16174620788507 21.647641277864846 38-39 21.69669446212423 27.470668561775184 29.196844265179518 21.635792710921066 40-41 22.003796880863554 27.337568530612195 29.045577261798 21.613057326726253 42-43 21.87299317949764 27.4003101741327 28.861517195699516 21.86517945067014 44-45 21.955599024128365 27.5251399335018 28.729358020425533 21.789903021944298 46-47 21.979633324059105 27.575796180974432 28.42267343640567 22.02189705856079 48-49 21.943143395360487 27.66207441266244 28.386976742669745 22.007805449307323 50-51 21.90230829777217 27.791958122151485 28.259893511630946 22.0458400684454 52-53 22.12712925283479 27.867282858903792 27.918403737651783 22.08718415060963 54-55 22.1115834940586 27.770095385190825 27.976431489214075 22.141889631536504 56-57 22.065970237531662 27.847552387064045 27.960271511513056 22.126205863891236 58-59 22.06337682581089 27.886845408722493 28.01282911022003 22.036948655246587 60-61 22.12309329246238 27.796113371306646 28.03448505788701 22.046308278343965 62-63 22.08779668559235 27.87567409831093 27.985639915657767 22.050889300438943 64-65 22.01281655685485 27.8858528299724 27.98827857022524 22.113052042947505 66-67 22.109672255252917 27.886975974569744 27.82307343023079 22.18027833994655 68-69 22.04174639626001 27.879456953185382 27.912056370979997 22.166740279574608 70-71 22.041271725646666 27.641617163385323 27.95672953442635 22.36038157654166 72-73 22.07614382350129 27.7175331281707 27.905495302020267 22.300827746307743 74-75 21.9417494032916 27.80325659340917 27.922605835303287 22.332388167995944 76-77 22.11544252258279 27.747854233121043 27.799130665839815 22.33757257845635 78-79 22.025190067550017 27.778644466383817 27.77300614063997 22.42315932542619 80-81 22.063629886542024 27.80184321686991 27.75565672957866 22.378870167009403 82-83 22.14084046871028 27.78189585273177 27.865729589804104 22.21153408875384 84-85 22.258418361585523 27.82493101997037 27.753384420718756 22.16326619772535 86-87 22.09960038678207 27.90141147474466 27.78777328470916 22.211214853764115 88-89 22.14941373628303 27.849974052492556 27.772668226339935 22.227943984884476 90-91 22.17224368080534 27.87816744936149 27.7836050027035 22.165983867129675 92-93 22.15717696127292 27.814358804020063 27.85157935547883 22.17688487922819 94-95 22.001799603596307 27.97298586368421 27.829893390501148 22.195321142218333 96-97 22.030078140116643 28.009623242214587 27.804514969440813 22.155783648227956 98-99 22.269462383645873 28.54015685926775 27.8533768601032 21.337003896983177 100-101 22.938350261488882 31.050406057920593 25.269913677947514 20.74133000264301 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4011.0 1 3392.5 2 3081.0 3 3934.5 4 5384.5 5 7739.0 6 9589.5 7 10066.5 8 9865.5 9 9496.0 10 9212.0 11 9927.0 12 12163.5 13 18689.5 14 30020.0 15 44000.0 16 57279.5 17 66187.0 18 70283.0 19 66070.0 20 58469.0 21 52126.5 22 48602.0 23 51425.0 24 59331.0 25 73044.0 26 91317.5 27 111821.5 28 135542.5 29 161743.5 30 188412.0 31 215931.0 32 244967.0 33 275046.0 34 305382.0 35 332132.0 36 360305.0 37 388742.5 38 408432.0 39 423445.5 40 439782.0 41 454599.5 42 463392.0 43 471178.0 44 478112.5 45 485183.0 46 489742.0 47 488600.0 48 487468.5 49 480678.0 50 468569.0 51 453450.0 52 429796.0 53 403725.5 54 379086.0 55 351927.0 56 322379.5 57 289984.0 58 257239.5 59 223429.0 60 187162.0 61 152607.5 62 119555.0 63 91852.5 64 71048.5 65 54356.5 66 40718.5 67 29898.5 68 21971.0 69 16381.5 70 12080.0 71 8405.0 72 5770.0 73 3869.5 74 2577.5 75 1625.5 76 1019.0 77 654.5 78 406.0 79 248.5 80 157.0 81 103.5 82 74.5 83 58.0 84 40.5 85 26.5 86 16.0 87 8.5 88 5.5 89 3.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003711731024482338 4 0.0 5 0.038214542510721164 6 0.0 7 0.0 8 0.0 9 0.0 10-11 8.572127077326415E-6 12-13 1.157237155439066E-4 14-15 4.286063538663207E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.7797156112337605E-5 46-47 0.0010144988950042124 48-49 0.0 50-51 8.672055451495961E-5 52-53 0.0012586421574767885 54-55 6.034268798174642E-4 56-57 0.0036374767263438828 58-59 0.008615500798005462 60-61 0.010893470689203393 62-63 0.005997688711914258 64-65 0.008176601865046705 66-67 0.005166031987369587 68-69 0.002571763868298009 70-71 0.004443098031088411 72-73 0.0028588866066110554 74-75 0.0012552307582954874 76-77 0.0020650532463298257 78-79 7.702571467539103E-4 80-81 3.423130518209576E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 1.9856804858077624E-4 94-95 3.1796986616313626E-4 96-97 1.4123559679383896E-4 98-99 4.893853768270314E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1185.0 20-21 4325.0 22-23 2550.0 24-25 3063.0 26-27 4708.0 28-29 9317.0 30-31 22135.0 32-33 27235.0 34-35 37735.0 36-37 60869.0 38-39 73688.0 40-41 72912.0 42-43 84396.0 44-45 98091.0 46-47 97143.0 48-49 90981.0 50-51 112479.0 52-53 72473.0 54-55 76374.0 56-57 78473.0 58-59 84562.0 60-61 85599.0 62-63 79831.0 64-65 84483.0 66-67 90672.0 68-69 92277.0 70-71 92821.0 72-73 85638.0 74-75 86851.0 76-77 91806.0 78-79 95919.0 80-81 98459.0 82-83 91227.0 84-85 89109.0 86-87 92341.0 88-89 98604.0 90-91 105651.0 92-93 100210.0 94-95 107071.0 96-97 169967.0 98-99 975609.0 100-101 7736877.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.26808224459108 #Duplication Level Percentage of deduplicated Percentage of total 1 87.3762400856912 71.00899465507088 2 8.368368280430067 13.60162483334036 3 2.28359507118014 5.5675017617403135 4 0.8931282041782458 2.9033126540848646 5 0.4097013571210227 1.6647821793115927 6 0.22430790233234324 1.0937443832913947 7 0.1401136942532717 0.797073985971786 8 0.07978960263411264 0.5187478391305846 9 0.05475503022128881 0.4004852669395892 >10 0.16606836329427235 2.0500198450494898 >50 0.0028931973427430415 0.1542955545777884 >100 9.254465130865948E-4 0.15174136126861604 >500 9.48051063012487E-5 0.05309971051473141 >1k 1.8959701913500985E-5 0.03457596970801854 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.572127077326415E-6 2 0.0 2.5716381231979246E-5 0.0 0.0 8.572127077326415E-6 3 0.0 3.428850830930566E-5 0.0 0.0 8.572127077326415E-6 4 0.0 6.857701661861132E-5 0.0 2.5716381231979246E-5 8.572127077326415E-6 5 0.0 6.857701661861132E-5 0.0 2.5716381231979246E-5 8.572127077326415E-6 6 1.628704144692019E-4 7.714914369593773E-5 0.0 2.5716381231979246E-5 8.572127077326415E-6 7 1.714425415465283E-4 7.714914369593773E-5 0.0 4.2860635386632075E-5 8.572127077326415E-6 8 1.714425415465283E-4 8.572127077326415E-5 0.0 4.2860635386632075E-5 8.572127077326415E-6 9 1.714425415465283E-4 1.628704144692019E-4 0.0 5.143276246395849E-5 2.5716381231979246E-5 10-11 1.8858679570118113E-4 1.628704144692019E-4 0.0 6.00048895412849E-5 2.5716381231979246E-5 12-13 1.9715892277850756E-4 1.628704144692019E-4 0.0 6.857701661861132E-5 3.000244477064245E-5 14-15 2.0573104985583397E-4 2.6573593939711887E-4 0.0 8.572127077326415E-5 5.57188260026217E-5 16-17 2.6573593939711887E-4 2.7002200293578207E-4 0.0 9.429339785059057E-5 7.714914369593773E-5 18-19 2.7430806647444527E-4 2.8716625709043493E-4 0.0 1.0286552492791698E-4 8.143520723460093E-5 20-21 2.7430806647444527E-4 3.0002444770642453E-4 0.0 1.157237155439066E-4 8.572127077326415E-5 22-23 3.2145476539974054E-4 3.214547653997406E-4 0.0 1.5858435093053867E-4 9.857946138925377E-5 24-25 3.9003178201835187E-4 3.7288752786369906E-4 0.0 2.5716381231979246E-4 1.3715403323722263E-4 26-27 3.943178455570151E-4 3.986039090956783E-4 0.0 3.6860146432503586E-4 1.4144009677588586E-4 28-29 3.943178455570151E-4 4.0717603617300473E-4 0.0 8.357823900393255E-4 1.671564780078651E-4 30-31 4.243202903276576E-4 4.371784809436472E-4 0.0 0.002023021990249034 1.8430073216251793E-4 32-33 4.414645444823104E-4 4.371784809436472E-4 0.0 0.004654665002988244 1.9715892277850756E-4 34-35 4.7146698925295286E-4 4.928973069462689E-4 0.0 0.008006366690222873 1.9715892277850756E-4 36-37 5.057554975622585E-4 5.486161329488905E-4 0.0 0.01349681408325044 2.0144498631717076E-4 38-39 5.057554975622585E-4 5.786185777195331E-4 0.0 0.023881946037431392 2.185892404718236E-4 40-41 5.100415611009217E-4 6.514816578768076E-4 0.0 0.051878513071979465 2.228753040104868E-4 42-43 5.400440058715641E-4 6.771980391087868E-4 0.0 0.062019339404456614 2.2716136754915E-4 44-45 5.400440058715641E-4 7.500611192660613E-4 0.0 0.07550758136062974 2.314474310878132E-4 46-47 5.400440058715641E-4 7.972078181913567E-4 0.0 0.09048737342825763 2.357334946264764E-4 48-49 5.657603871035435E-4 7.972078181913567E-4 0.0 0.10389846624073482 2.5716381231979246E-4 50-51 5.914767683355227E-4 8.786430254259576E-4 0.0 0.11837678887433914 2.5716381231979246E-4 52-53 6.129070860288387E-4 8.829290889646208E-4 0.0 0.14072432416492908 2.6573593939711887E-4 54-55 6.343374037221547E-4 8.829290889646208E-4 0.0 0.18961545095046028 2.7430806647444527E-4 56-57 6.771980391087868E-4 8.915012160419472E-4 0.0 0.24187970974091944 2.7430806647444527E-4 58-59 6.943422932634396E-4 8.915012160419472E-4 0.0 0.3024932203046945 2.785941300131085E-4 60-61 6.986283568021028E-4 9.215036608125896E-4 0.0 0.322607716491641 2.828801935517717E-4 62-63 7.157726109567556E-4 9.343618514285793E-4 0.0 0.3330271369541312 3.0002444770642453E-4 64-65 7.329168651114085E-4 0.0010886601388204547 0.0 0.34278221756812866 3.0002444770642453E-4 66-67 7.543471828047245E-4 0.001097232265897781 0.0 0.348619836107788 3.0002444770642453E-4 68-69 7.543471828047245E-4 0.0011272347106684236 0.0 0.3542860121059007 3.0002444770642453E-4 70-71 7.586332463433877E-4 0.0011443789648230766 0.0 0.3596093030209204 3.1288263832241414E-4 72-73 7.629193098820509E-4 0.0011486650283617397 0.0 0.3638096452888104 3.343129560157302E-4 74-75 7.757775004980406E-4 0.001174381409593719 0.0 0.36697276018034386 3.343129560157302E-4 76-77 7.886356911140302E-4 0.0012043838543643612 0.0 0.36977584573462957 3.385990195543934E-4 78-79 8.014938817300199E-4 0.0012258141720576773 0.0 0.37272894351276853 3.428850830930566E-4 80-81 8.057799452686831E-4 0.0012258141720576773 0.0 0.3741304862899114 3.471711466317198E-4 82-83 8.057799452686831E-4 0.0012258141720576773 0.0 0.37467481635932165 3.7288752786369906E-4 84-85 8.143520723460095E-4 0.0012301002355963406 0.0 0.3751762857933452 3.7717359140236226E-4 86-87 8.229241994233359E-4 0.0012686748074443096 0.0 0.3753563004619691 3.7717359140236226E-4 88-89 8.272102629619991E-4 0.0013372518240629208 0.0 0.37540773322443305 3.8145965494102547E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20135 0.0 51.098957 1 GTATCAA 36320 0.0 37.251957 1 ATCAACG 41620 0.0 31.823812 3 TCAACGC 41945 0.0 31.586304 4 TATCAAC 43130 0.0 30.979818 2 CAACGCA 42735 0.0 30.962008 5 AACGCAG 43850 0.0 30.262754 6 GTGGTAT 9735 0.0 27.4861 1 TGGTATC 9395 0.0 27.148642 2 ACGCAGA 49225 0.0 26.914469 7 CGCAGAG 50150 0.0 26.443848 8 GCAGAGT 57350 0.0 23.056253 9 GAGTACT 32220 0.0 22.240051 12-13 GTACATG 43630 0.0 20.930899 1 CAGAGTA 56585 0.0 20.592777 10-11 TACATGG 43110 0.0 20.43254 2 ACATGGG 42815 0.0 19.968523 3 GTACTTT 35595 0.0 19.942148 14-15 AGAGTAC 53565 0.0 18.254349 10-11 CATGGGG 28730 0.0 17.860224 4 >>END_MODULE