##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140158_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9665229 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.48555766242062 30.0 18.0 33.0 18.0 33.0 2 29.948783934658973 32.0 27.0 33.0 25.0 33.0 3 30.68017571027029 33.0 29.0 33.0 27.0 33.0 4 31.342939520625947 33.0 31.0 33.0 28.0 33.0 5 31.62510769274065 33.0 32.0 33.0 30.0 34.0 6 34.49955805496176 37.0 34.0 38.0 28.0 38.0 7 35.678758361545285 38.0 36.0 38.0 31.0 38.0 8 35.5753192190273 38.0 36.0 38.0 31.0 38.0 9 36.27689545690019 38.0 37.0 38.0 33.0 38.0 10-11 36.55937453732343 38.0 37.5 38.0 34.0 38.0 12-13 36.6681570090062 38.0 38.0 38.0 34.0 38.0 14-15 36.67228815789052 38.0 38.0 38.0 34.0 38.0 16-17 36.67153830498998 38.0 38.0 38.0 34.0 38.0 18-19 36.70019008344241 38.0 38.0 38.0 34.0 38.0 20-21 36.725919398415 38.0 38.0 38.0 34.0 38.0 22-23 36.743881730255495 38.0 38.0 38.0 34.0 38.0 24-25 36.73945908672237 38.0 38.0 38.0 34.0 38.0 26-27 36.69314491833248 38.0 38.0 38.0 34.0 38.0 28-29 36.68062690488564 38.0 38.0 38.0 34.0 38.0 30-31 36.66849708463838 38.0 38.0 38.0 34.0 38.0 32-33 36.650569346127135 38.0 38.0 38.0 34.0 38.0 34-35 36.6172442948228 38.0 38.0 38.0 34.0 38.0 36-37 36.58748780445907 38.0 38.0 38.0 34.0 38.0 38-39 36.55423552145407 38.0 38.0 38.0 34.0 38.0 40-41 36.57573996695551 38.0 38.0 38.0 34.0 38.0 42-43 36.5476124529599 38.0 38.0 38.0 34.0 38.0 44-45 36.47630954663519 38.0 38.0 38.0 34.0 38.0 46-47 36.42413548199957 38.0 38.0 38.0 34.0 38.0 48-49 36.38710515799512 38.0 38.0 38.0 34.0 38.0 50-51 36.37042311766976 38.0 38.0 38.0 34.0 38.0 52-53 36.34337239330583 38.0 38.0 38.0 33.5 38.0 54-55 36.31147683619463 38.0 38.0 38.0 33.0 38.0 56-57 36.27981968678886 38.0 37.5 38.0 33.0 38.0 58-59 36.25065839301314 38.0 37.0 38.0 33.0 38.0 60-61 36.248124248511886 38.0 37.0 38.0 33.0 38.0 62-63 36.23163331718651 38.0 37.0 38.0 33.0 38.0 64-65 36.225778406777394 38.0 37.0 38.0 33.0 38.0 66-67 36.197032273849956 38.0 37.0 38.0 33.0 38.0 68-69 36.18367896075456 38.0 37.0 38.0 33.0 38.0 70-71 36.16974664507865 38.0 37.0 38.0 33.0 38.0 72-73 36.14703833248726 38.0 37.0 38.0 33.0 38.0 74-75 36.141200286258865 38.0 37.0 38.0 33.0 38.0 76-77 36.12407297448505 38.0 37.0 38.0 33.0 38.0 78-79 36.139306060223205 38.0 37.0 38.0 33.0 38.0 80-81 36.092573245683454 38.0 37.0 38.0 33.0 38.0 82-83 36.09434972176603 38.0 37.0 38.0 33.0 38.0 84-85 36.08370740281927 38.0 37.0 38.0 33.0 38.0 86-87 36.0466186779427 38.0 37.0 38.0 33.0 38.0 88-89 36.03646002205398 38.0 37.0 38.0 32.5 38.0 90-91 36.03906282062738 38.0 37.0 38.0 32.5 38.0 92-93 36.01953184140966 38.0 37.0 38.0 32.5 38.0 94-95 35.99883192453747 38.0 37.0 38.0 32.0 38.0 96-97 36.00789803764376 38.0 37.0 38.0 32.5 38.0 98-99 36.05004830059751 38.0 37.0 38.0 33.0 38.0 100-101 35.449715422882576 38.0 35.5 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 3.0 17 11.0 18 20.0 19 46.0 20 170.0 21 708.0 22 2770.0 23 7976.0 24 17241.0 25 32162.0 26 51767.0 27 77370.0 28 108225.0 29 143810.0 30 184893.0 31 232092.0 32 294008.0 33 383077.0 34 530652.0 35 828527.0 36 1809573.0 37 4960128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.06141985875348 17.942254653252395 14.232844353713709 20.76348113428042 2 15.070299938056305 20.090812126644906 43.47847319499621 21.360414740302584 3 19.11513614173582 26.793379393004795 29.149172869036615 24.94231159622277 4 12.850124916854014 18.822895970700745 37.761019423337 30.565959689108247 5 14.302286659301364 37.57377463872654 34.550212502838576 13.57372619913351 6 30.107967436674286 37.34871672466322 18.50537633407341 14.037939504589078 7 27.006964863429516 33.08093372645387 21.860878826564793 18.051222583551823 8 24.5433398422324 37.030503881491065 20.379299859320458 18.046856416956082 9 25.82954837386677 17.639468242294104 20.79632050104555 35.734662882793565 10-11 24.728339324828173 26.988420397924372 27.755572462668628 20.52766781457883 12-13 25.555719373175158 24.196924643205225 28.25551306643822 21.991842917181398 14-15 22.625045924933595 25.578969727463257 26.298895763359564 25.49708858424358 16-17 21.911193206079236 28.925636423099753 26.77882231243564 22.384348058385374 18-19 21.899248326138988 27.768581582495354 28.87067652509837 21.461493566267286 20-21 22.957532370708623 26.676308851270882 28.859983723056835 21.506175054963663 22-23 22.62096441299835 26.70922914196731 28.74349599776603 21.926310447268314 24-25 22.36606747634414 26.886672937965393 28.875313155075894 21.87194643061457 26-27 22.25789477472771 27.04061359460169 28.869128241957405 21.832363388713194 28-29 22.070429128523017 27.138392763464168 28.808192785691695 21.982985322321124 30-31 22.542433850083967 26.832073551055867 28.834010879643134 21.79148171921703 32-33 22.022869939983288 26.862566265302597 28.974001489983365 22.140562304730757 34-35 22.031461530014894 27.060718125289014 28.866243287649475 22.04157705704662 36-37 22.153038264666986 27.039345203470084 29.016736387445413 21.790880144417514 38-39 22.056347135090935 27.122627495904332 28.872418916741953 21.94860645226278 40-41 22.396812127959258 26.94529484303941 28.745945401275673 21.911947627725652 42-43 22.344672539183044 26.964192349258827 28.576998281489203 22.11413683006893 44-45 22.246267732795005 27.298079219695463 28.43315442735186 22.02249862015767 46-47 22.433078618685865 26.979950151341974 28.080365596604057 22.506605633368103 48-49 22.366654845489037 27.12920868168735 28.065837739644916 22.438298733178694 50-51 22.113984690339507 27.276222111491315 28.224240128450795 22.385553069718384 52-53 22.44378328940961 27.292509936136838 27.975753635642043 22.28795313881151 54-55 22.31630054467005 27.174776451140982 27.910200329985656 22.598722674203316 56-57 22.576618822701153 27.500891344283 27.498486129551093 22.424003703464752 58-59 22.26736060728496 27.816975967342877 27.892185898682794 22.02347752668937 60-61 22.560867642459446 27.945336729646936 27.46180801620931 22.031987611684308 62-63 22.26954813259206 28.164784536191412 27.44724592660257 22.11842140461396 64-65 22.174583607524397 28.108639059418095 27.540081149826385 22.176696183231122 66-67 22.387465905921616 28.05546167045621 27.278506667549056 22.278565756073117 68-69 22.30139706803584 27.898023695682266 27.518578426273137 22.282000810008757 70-71 22.316260391570104 27.446044543162373 27.630264712815283 22.60743035245224 72-73 22.445732615341512 27.47039297435941 27.595029065673877 22.488845344625204 74-75 22.20465237765809 27.565217498439903 27.680242518476263 22.54988760542574 76-77 22.344919014294 27.50368837449104 27.555867426538228 22.595525184676728 78-79 22.356756065902953 27.588809421831595 27.453060551654534 22.601373960610918 80-81 22.41132480292551 27.536495129384686 27.410901464181258 22.641278603508542 82-83 22.48643574974522 27.486189686248537 27.60547281100888 22.42190175299736 84-85 22.682507978666784 27.493313553370534 27.424509462681655 22.39966900528102 86-87 22.299615524658932 27.62175248507933 27.473539057743967 22.605092932517767 88-89 22.378238235572017 27.57376296032088 27.50314638284987 22.544852421257232 90-91 22.554417733737676 27.534080961299672 27.48585386301194 22.425647441950712 92-93 22.620528604325845 27.527188698873022 27.377883764013887 22.474398932787242 94-95 22.38473494260593 27.762908581177896 27.340739899759203 22.511616576456966 96-97 22.310327850803546 27.785499282283233 27.472875291778003 22.43129757513522 98-99 22.551165332054502 28.324779494847874 27.450667046525055 21.67338812657257 100-101 23.258272769197948 30.849958928382087 24.832895044450602 21.058873257969363 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2408.0 1 2049.0 2 1975.0 3 2757.0 4 3956.0 5 5844.0 6 7416.0 7 7940.0 8 7894.0 9 7744.5 10 7693.5 11 8414.0 12 10444.5 13 15991.0 14 25272.0 15 36793.0 16 47556.0 17 54022.5 18 56404.0 19 52734.5 20 46934.5 21 41832.0 22 38872.5 23 41489.5 24 48486.5 25 60373.0 26 77514.5 27 95789.5 28 113116.0 29 131332.5 30 147901.5 31 164581.5 32 184621.0 33 207561.0 34 231375.5 35 252116.0 36 274741.0 37 295975.5 38 310383.0 39 322824.0 40 339862.0 41 354343.5 42 362540.5 43 371538.0 44 383855.0 45 409185.0 46 425304.5 47 422972.0 48 420198.0 49 413117.0 50 403924.0 51 393857.5 52 376195.5 53 358064.5 54 342595.0 55 320670.0 56 295165.5 57 266520.0 58 235685.5 59 205764.5 60 174115.0 61 141767.5 62 110603.0 63 84843.5 64 65009.5 65 49080.5 66 36720.5 67 26929.5 68 19330.5 69 14037.5 70 10012.5 71 6697.5 72 4375.0 73 2783.5 74 1789.5 75 1153.0 76 713.5 77 414.5 78 234.0 79 148.5 80 100.0 81 64.5 82 45.0 83 35.0 84 29.5 85 19.0 86 10.5 87 9.0 88 8.0 89 7.5 90 5.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0038798873777331094 4 0.0 5 0.038395365490046844 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.1731831703108116E-6 12-13 9.311729706559463E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 2.6879165464272002E-5 46-47 0.0010251909485945391 48-49 2.1887687163664907E-5 50-51 1.0480994922233777E-4 52-53 0.0013655435136292946 54-55 7.243124281793694E-4 56-57 0.003644474908129805 58-59 0.008484005737858031 60-61 0.010615949471532857 62-63 0.006144730867170646 64-65 0.007794270123070472 66-67 0.0050577218413699904 68-69 0.002693188663120854 70-71 0.004107708465298502 72-73 0.0027662218301067157 74-75 0.0013614065633718432 76-77 0.001970741513564297 78-79 6.716777593934762E-4 80-81 4.6931715432207163E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 2.3645522007664256E-4 94-95 2.0505528256242004E-4 96-97 1.5233714259282804E-4 98-99 6.000735947401549E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1088.0 20-21 3725.0 22-23 2134.0 24-25 2424.0 26-27 4039.0 28-29 7665.0 30-31 19321.0 32-33 23563.0 34-35 31897.0 36-37 52283.0 38-39 64154.0 40-41 61975.0 42-43 69973.0 44-45 82025.0 46-47 81927.0 48-49 75757.0 50-51 94467.0 52-53 64859.0 54-55 68883.0 56-57 71335.0 58-59 73188.0 60-61 73318.0 62-63 71585.0 64-65 81566.0 66-67 88053.0 68-69 87154.0 70-71 100421.0 72-73 72221.0 74-75 72716.0 76-77 76425.0 78-79 80334.0 80-81 82459.0 82-83 76769.0 84-85 75086.0 86-87 77584.0 88-89 82665.0 90-91 88436.0 92-93 84657.0 94-95 89378.0 96-97 140758.0 98-99 803383.0 100-101 6303579.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.31241898460388 #Duplication Level Percentage of deduplicated Percentage of total 1 87.95578787137309 71.5189787551803 2 8.03150478142436 13.06122163728054 3 2.1235892031960373 5.180225251243719 4 0.8157789396258313 2.653318357506859 5 0.3878888847351982 1.577009175752958 6 0.21028904618711464 1.025946661886363 7 0.13000749530284217 0.7399856750442538 8 0.07653803840733903 0.4978794437789804 9 0.06170619097232111 0.4515731688856821 >10 0.1987847135342898 2.5226634935928245 >50 0.0058261422174625795 0.32579343929303284 >100 0.0021768144988168693 0.33706660503311464 >500 7.312743807085686E-5 0.042019463983407127 >1k 4.875108722905606E-5 0.06631887153797257 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.103909902186487E-5 0.0 1.0346366340621625E-5 0.0 5 0.0 3.103909902186487E-5 0.0 1.0346366340621625E-5 0.0 6 0.0 3.103909902186487E-5 0.0 5.173183170310812E-5 0.0 7 0.0 3.103909902186487E-5 0.0 5.173183170310812E-5 1.0346366340621625E-5 8 0.0 4.13854653624865E-5 0.0 5.173183170310812E-5 1.0346366340621625E-5 9 0.0 1.4484912876870274E-4 0.0 5.173183170310812E-5 1.0346366340621625E-5 10-11 0.0 1.4484912876870274E-4 0.0 5.173183170310812E-5 1.0346366340621625E-5 12-13 0.0 1.4484912876870274E-4 0.0 6.207819804372974E-5 1.0346366340621625E-5 14-15 0.0 1.8623459413118923E-4 0.0 6.207819804372974E-5 1.0346366340621625E-5 16-17 0.0 1.8623459413118923E-4 0.0 8.2770930724973E-5 1.0346366340621625E-5 18-19 0.0 2.0692732681243248E-4 0.0 8.2770930724973E-5 2.069273268124325E-5 20-21 0.0 2.2762005949367574E-4 0.0 9.829048023590543E-5 2.069273268124325E-5 22-23 0.0 2.7417870802647304E-4 0.0 1.0346366340621624E-4 2.069273268124325E-5 24-25 0.0 3.3625690607020275E-4 0.0 1.1898321291714867E-4 2.069273268124325E-5 26-27 0.0 3.621228219217568E-4 0.0 1.6036867827963518E-4 3.103909902186487E-5 28-29 0.0 3.621228219217568E-4 0.0 3.6729600509206764E-4 3.6212282192175685E-5 30-31 0.0 4.242010199654866E-4 0.0 0.0010087707182106084 4.13854653624865E-5 32-33 0.0 4.242010199654866E-4 0.0 0.002364144708832041 4.13854653624865E-5 34-35 0.0 5.173183170310812E-4 0.0 0.004381686145253257 4.13854653624865E-5 36-37 0.0 6.104356140966758E-4 0.0 0.007128646408688299 4.13854653624865E-5 38-39 0.0 6.311283467779191E-4 0.0 0.011251673395426017 4.13854653624865E-5 40-41 0.0 7.13899277502892E-4 0.0 0.016264487887457192 4.13854653624865E-5 42-43 0.0 7.294188270138245E-4 0.0 0.02069790586441356 4.13854653624865E-5 44-45 0.0 7.96670208227865E-4 0.0 0.02598489906447121 4.13854653624865E-5 46-47 0.0 8.380556735903516E-4 0.0 0.031752998299367764 4.13854653624865E-5 48-49 0.0 8.380556735903516E-4 0.0 0.03732968975696282 4.13854653624865E-5 50-51 0.0 9.156534211450138E-4 0.0 0.0429632862294313 4.13854653624865E-5 52-53 0.0 9.208266043153246E-4 0.0 0.04830201126119205 4.13854653624865E-5 54-55 0.0 9.208266043153246E-4 0.0 0.05432876965460415 4.13854653624865E-5 56-57 0.0 9.208266043153246E-4 0.0 0.06005031024096791 4.13854653624865E-5 58-59 0.0 9.259997874856353E-4 0.0 0.06532695707468494 4.13854653624865E-5 60-61 0.0 9.466925201668786E-4 0.0 0.07086743625008782 4.13854653624865E-5 62-63 0.0 9.829048023590544E-4 0.0 0.07609752443527204 4.13854653624865E-5 64-65 0.0 0.0011484466638090002 0.0 0.08126553442241255 4.13854653624865E-5 66-67 0.0 0.0011484466638090002 0.0 0.08661460582051392 4.13854653624865E-5 68-69 0.0 0.0011898321291714867 0.0 0.09193263811959343 4.13854653624865E-5 70-71 0.0 0.00121052486185273 0.0 0.09694027942845432 4.13854653624865E-5 72-73 0.0 0.00121052486185273 0.0 0.10115642371225761 4.13854653624865E-5 74-75 0.0 0.0012363907777042842 0.0 0.10450864640661903 4.13854653624865E-5 76-77 0.0 0.001324334891599568 0.0 0.10728147258590562 5.173183170310812E-5 78-79 0.0 0.0013450276242808112 0.0 0.10977494687399544 6.207819804372974E-5 80-81 0.0 0.0013450276242808112 0.0 0.11102685720121065 6.207819804372974E-5 82-83 0.0 0.0013450276242808112 0.0 0.11147692413702769 6.207819804372974E-5 84-85 0.0 0.0013553739906214328 0.0 0.11187008605797132 6.207819804372974E-5 86-87 0.0 0.0013657203569620545 0.0 0.11209253293429466 6.207819804372974E-5 88-89 0.0 0.0013967594559839193 0.0 0.11214426476599779 6.207819804372974E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19130 0.0 46.200523 1 CTTATAC 8310 0.0 36.726036 1 GTATCAA 33210 0.0 35.932003 1 ATCAACG 37585 0.0 30.949974 3 TCAACGC 37735 0.0 30.825666 4 CAACGCA 38285 0.0 30.416462 5 TATCAAC 39265 0.0 29.964634 2 AACGCAG 39605 0.0 29.444098 6 TATACAC 12425 0.0 29.22668 3 ACGCAGA 44380 0.0 26.25677 7 CGCAGAG 45695 0.0 25.501158 8 TTATACA 14225 0.0 24.713665 2 GCAGAGT 50795 0.0 22.881622 9 ACATCTC 14965 0.0 22.649008 8 ACACATC 15050 0.0 22.492579 6 TACACAT 16660 0.0 22.363113 5 TACATGG 38390 0.0 22.28408 2 GTGGTAT 10025 0.0 22.26509 1 GTACATG 40010 0.0 21.950409 1 GAGTACT 27565 0.0 21.899534 12-13 >>END_MODULE