##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140157_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6852715 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.763950054832282 30.0 18.0 32.0 18.0 33.0 2 26.018791967855076 28.0 18.0 32.0 18.0 33.0 3 30.944554822431694 31.0 30.0 33.0 27.0 33.0 4 30.710092861004725 32.0 31.0 33.0 27.0 33.0 5 32.494893337896 33.0 33.0 33.0 32.0 33.0 6 36.49995571098462 38.0 37.0 38.0 34.0 38.0 7 36.63062844434651 38.0 37.0 38.0 34.0 38.0 8 37.078149755243 38.0 38.0 38.0 36.0 38.0 9 37.07205640392166 38.0 38.0 38.0 36.0 38.0 10-11 37.18503345024563 38.0 38.0 38.0 36.0 38.0 12-13 37.306745282709116 38.0 38.0 38.0 36.5 38.0 14-15 37.31769554111035 38.0 38.0 38.0 36.5 38.0 16-17 37.41334237597799 38.0 38.0 38.0 37.0 38.0 18-19 37.40130933505917 38.0 38.0 38.0 37.0 38.0 20-21 37.42812560453652 38.0 38.0 38.0 37.0 38.0 22-23 37.43434072399987 38.0 38.0 38.0 37.0 38.0 24-25 37.45391703503145 38.0 38.0 38.0 37.0 38.0 26-27 37.4015183758502 38.0 38.0 38.0 37.0 38.0 28-29 37.36940577817424 38.0 38.0 38.0 37.0 38.0 30-31 37.38487656047518 38.0 38.0 38.0 37.0 38.0 32-33 37.36532293356866 38.0 38.0 38.0 37.0 38.0 34-35 37.33157068413064 38.0 38.0 38.0 37.0 38.0 36-37 37.30259779086334 38.0 38.0 38.0 37.0 38.0 38-39 37.29924648984575 38.0 38.0 38.0 37.0 38.0 40-41 37.3447721411389 38.0 38.0 38.0 37.0 38.0 42-43 37.32201634829154 38.0 38.0 38.0 37.0 38.0 44-45 37.29895625811463 38.0 38.0 38.0 37.0 38.0 46-47 37.29043093545063 38.0 38.0 38.0 37.0 38.0 48-49 37.23938767813077 38.0 38.0 38.0 37.0 38.0 50-51 37.17274064550239 38.0 38.0 38.0 37.0 38.0 52-53 37.17104130463815 38.0 38.0 38.0 36.5 38.0 54-55 37.11771332216489 38.0 38.0 38.0 36.5 38.0 56-57 37.102408313332575 38.0 38.0 38.0 36.0 38.0 58-59 37.107846666476576 38.0 38.0 38.0 36.0 38.0 60-61 37.115957885259874 38.0 38.0 38.0 36.0 38.0 62-63 37.126443038737946 38.0 38.0 38.0 36.0 38.0 64-65 37.13526741930118 38.0 38.0 38.0 36.0 38.0 66-67 37.13112247356507 38.0 38.0 38.0 36.0 38.0 68-69 37.12131214087189 38.0 38.0 38.0 36.0 38.0 70-71 37.117839248924156 38.0 38.0 38.0 36.0 38.0 72-73 37.11954832967679 38.0 38.0 38.0 36.0 38.0 74-75 37.11709755921633 38.0 38.0 38.0 36.0 38.0 76-77 37.1181234203164 38.0 38.0 38.0 36.0 38.0 78-79 37.106009086749964 38.0 38.0 38.0 36.0 38.0 80-81 37.107490554780824 38.0 38.0 38.0 36.0 38.0 82-83 37.06544790913299 38.0 38.0 38.0 36.0 38.0 84-85 37.054620515094086 38.0 38.0 38.0 36.0 38.0 86-87 37.05602566374049 38.0 38.0 38.0 36.0 38.0 88-89 37.039571388117665 38.0 38.0 38.0 36.0 38.0 90-91 37.04346846265797 38.0 38.0 38.0 36.0 38.0 92-93 37.047770458402766 38.0 38.0 38.0 36.0 38.0 94-95 37.057319728538594 38.0 38.0 38.0 36.0 38.0 96-97 37.07126694644165 38.0 38.0 38.0 36.0 38.0 98-99 37.06293947222444 38.0 38.0 38.0 36.0 38.0 100 35.644973424203314 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 17.0 19 31.0 20 51.0 21 146.0 22 387.0 23 1110.0 24 2689.0 25 5607.0 26 10251.0 27 16908.0 28 26381.0 29 38743.0 30 52848.0 31 69531.0 32 91480.0 33 127681.0 34 203400.0 35 402230.0 36 1236696.0 37 4566523.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.687625269692376 21.232022636283578 13.691974640708098 24.38837745331595 2 15.36835293604274 20.63470542812939 41.38787211787924 22.609069517948623 3 18.061177212243614 26.38577556486735 30.662095242542552 24.890951980346475 4 12.53119384068942 18.272524101761125 38.023469529960025 31.17281252758943 5 13.276154049891176 37.65886951376206 35.827434819629886 13.237541616716877 6 29.81745191504389 37.71214766701957 18.514048811310555 13.956351606625987 7 26.235265876371628 32.642376050952066 22.51116528266534 18.611192790010968 8 24.189157144285147 37.00204955262257 21.34943595348705 17.459357349605227 9 25.10539253419995 16.96752309121275 20.627328000653755 37.29975637393355 10-11 24.20580747922539 26.52435567508644 28.85810952301387 20.4117273226743 12-13 25.20964318521929 23.84901458764884 28.723951017954196 22.217391209177677 14-15 22.25210737641942 25.451656752104824 25.9160274431375 26.380208428338257 16-17 22.12149491114106 28.86245816439178 26.57549598954575 22.440550934921415 18-19 22.27298961068715 27.603614042025683 28.255676764610815 21.867719582676358 20-21 22.810378142241092 26.843871545433707 28.21922609893161 22.126524213393598 22-23 22.450549877929355 27.32637084214991 28.137752631948775 22.08532664797196 24-25 22.699429659417813 27.30160289207823 28.355425678658154 21.643541769845804 26-27 22.801239555246575 27.470590046921934 28.30708987242611 21.42108052540538 28-29 22.635287067786336 27.328946999545607 28.223409244621166 21.81235668804689 30-31 22.463199763525573 27.471773423007516 28.594646952669674 21.47037986079724 32-33 22.490812030671908 27.556513387660925 28.394606718012987 21.55806786365418 34-35 22.799166796081106 27.06185824260378 28.638933421481937 21.500041539833177 36-37 22.089631016634385 27.507682580704845 28.459952840201584 21.942733562459185 38-39 22.075866742249666 26.90118273275475 28.78017585410478 22.242774670890807 40-41 22.280972148366057 26.734906411925998 28.869587149690073 22.114534290017875 42-43 22.514727526720193 26.628202204985733 28.788656155199664 22.06841411309441 44-45 22.07620337916623 27.05011434996801 28.67939987473409 22.194282396131673 46-47 22.634980261764497 26.624250638748435 28.103322554283466 22.6374465452036 48-49 22.382473928618165 26.69047396286227 28.201915468428773 22.725136640090795 50-51 22.067689833905 26.987994306264078 28.53475716745718 22.40955869237374 52-53 22.29407346947876 27.09984323903806 28.72964939008458 21.876433901398602 54-55 22.21446308213087 27.172724948903127 28.189490766580022 22.423321202385978 56-57 22.57021514050321 27.806239374931728 27.569152192578088 22.054393291986973 58-59 21.87903539236221 28.45394849808109 28.13318945096677 21.533826658589927 60-61 22.316127960799363 29.026158853815748 27.18845407797118 21.469259107413713 62-63 21.848493812433816 29.39660307145703 27.18334066846718 21.571562447641977 64-65 21.844128318061937 29.202592682427948 27.24594095703695 21.707338042473165 66-67 22.017475502875097 29.054844763444443 27.17986944514555 21.74781028853491 68-69 22.06153031632762 28.586278594885904 27.42366630755255 21.928524781233925 70-71 22.232566643936895 27.942293224096236 27.636280067669293 22.188860064297568 72-73 22.46718724012284 27.56514169119255 27.686515485405046 22.281155583279567 74-75 22.27841019370033 27.654678045123816 27.737003944236143 22.32990781693971 76-77 22.494968880071408 27.52853416193077 27.615452213217523 22.361044744780294 78-79 22.434928839108554 27.577505404213948 27.596189433584723 22.39137632309277 80-81 22.492535104442663 27.551053122300438 27.570025529306 22.3863862439509 82-83 22.516610564242665 27.52712079832063 27.659129976236574 22.297138661200126 84-85 22.635622687507695 27.47759841789566 27.551510669820185 22.33526822477646 86-87 22.4367250578777 27.51137217666233 27.685959114154407 22.36594365130556 88-89 22.531822438635135 27.567982867761216 27.57784410196135 22.3223505916423 90-91 22.627004579949265 27.507110675259533 27.591606992019884 22.27427775277132 92-93 22.641297630870596 27.502982251977354 27.571701904413214 22.284018212738836 94-95 22.48634861012711 27.57824366944888 27.656004072942185 22.279403647481825 96-97 22.61270515604806 27.64583098433542 27.71414314883005 22.027320710786466 98-99 23.62118222263393 29.615156945788286 27.881243310125654 18.882417521452133 100 22.647178250126636 30.471003468499525 21.813325454251473 25.068492827122363 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 987.0 1 888.0 2 1202.0 3 1803.0 4 2375.0 5 3333.5 6 4210.5 7 5412.0 8 6760.0 9 7384.0 10 7321.0 11 7322.5 12 8247.0 13 10289.5 14 14058.0 15 18507.0 16 21758.5 17 23310.5 18 23318.0 19 21984.5 20 20073.5 21 18904.0 22 19504.5 23 22458.5 24 28032.0 25 36368.0 26 47817.0 27 60518.0 28 72876.5 29 86856.0 30 100907.0 31 115576.5 32 131659.0 33 147161.0 34 163031.0 35 178389.0 36 195061.5 37 211451.0 38 223155.0 39 232705.0 40 244043.5 41 254072.0 42 265790.0 43 294189.0 44 322705.0 45 337388.5 46 334450.5 47 313231.5 48 292855.0 49 280709.0 50 274093.0 51 266784.5 52 256560.0 53 243745.0 54 230238.0 55 215220.5 56 197850.5 57 178461.5 58 158505.5 59 137751.5 60 114519.0 61 92299.0 62 72586.5 63 55402.5 64 41350.5 65 30177.0 66 21978.0 67 16557.0 68 12488.5 69 9124.0 70 6522.5 71 4541.5 72 3164.0 73 2089.0 74 1327.5 75 855.5 76 547.0 77 350.5 78 220.5 79 139.5 80 88.5 81 59.0 82 45.0 83 31.0 84 16.5 85 8.5 86 5.5 87 4.5 88 5.0 89 4.5 90 2.5 91 1.5 92 1.0 93 0.5 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010010630822965789 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.3133620580208335E-4 22-23 7.296729532856079E-6 24-25 4.2323486433680735E-4 26-27 0.002816958968730296 28-29 0.007022741564424456 30-31 0.007146336884897138 32-33 0.0023208244798516194 34-35 7.999656528508684E-4 36-37 1.1784779868414094E-4 38-39 4.8121371278441214E-4 40-41 1.0422362518802127E-4 42-43 9.731259297563269E-5 44-45 1.1300135594093705E-4 46-47 1.517712655257262E-5 48-49 9.172443777505866E-4 50-51 3.847520011721085E-4 52-53 0.0 54-55 0.008185110279758658 56-57 0.06641461243723525 58-59 0.07994816424500377 60-61 0.047192937984871876 62-63 0.009691057270300903 64-65 7.279084634078798E-5 66-67 0.0 68-69 6.541348776436571E-4 70-71 0.003547731200735915 72-73 0.013101619167983419 74-75 0.01164926206339376 76-77 0.017373678626340726 78-79 0.0075253084222398296 80-81 0.008413905850150092 82-83 0.04246410852958261 84-85 0.026725554530708996 86-87 0.00982528625593611 88-89 0.0024312295426321996 90-91 9.150564113976498E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 41.0 20-21 197.0 22-23 411.0 24-25 482.0 26-27 1540.0 28-29 4340.0 30-31 12670.0 32-33 15560.0 34-35 21370.0 36-37 32863.0 38-39 37841.0 40-41 36506.0 42-43 40217.0 44-45 47394.0 46-47 48547.0 48-49 44748.0 50-51 40068.0 52-53 37838.0 54-55 40093.0 56-57 40685.0 58-59 43964.0 60-61 53516.0 62-63 55871.0 64-65 63817.0 66-67 74883.0 68-69 71332.0 70-71 90900.0 72-73 50969.0 74-75 44980.0 76-77 46591.0 78-79 47525.0 80-81 47669.0 82-83 44989.0 84-85 44030.0 86-87 45036.0 88-89 46936.0 90-91 48272.0 92-93 47791.0 94-95 57811.0 96-97 203146.0 98-99 462219.0 100-101 4657057.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.07824315892897 #Duplication Level Percentage of deduplicated Percentage of total 1 90.02106206426545 77.48854869792878 2 7.191073291455307 12.379899107111392 3 1.6271185691132295 4.201785235216113 4 0.5468259826036989 1.8827927958472581 5 0.24178168187624413 1.0406071201959075 6 0.13730579843226012 0.7091425142749785 7 0.07305097669675709 0.44016698145704974 8 0.04484794893253234 0.30883461227149983 9 0.0300871973540557 0.23308677808317815 >10 0.08495281310543129 1.104664891446669 >50 0.0011677044529026666 0.06717500161883036 >100 6.745084052979587E-4 0.09955128811985907 >500 2.5731653585573854E-5 0.017719484273762822 >1k 2.573165321741661E-5 0.026025492154727783 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.75565378101964E-5 0.0 0.0 0.0 3 0.0 8.75565378101964E-5 0.0 0.0 0.0 4 0.0 1.6052031931869338E-4 0.0 1.45927563016994E-5 0.0 5 0.0 1.751130756203928E-4 0.0 1.45927563016994E-5 0.0 6 0.0 1.751130756203928E-4 0.0 2.91855126033988E-5 1.45927563016994E-5 7 0.0 1.751130756203928E-4 0.0 2.91855126033988E-5 1.45927563016994E-5 8 0.0 1.897058319220922E-4 0.0 2.91855126033988E-5 1.45927563016994E-5 9 0.0 2.91855126033988E-4 0.0 5.83710252067976E-5 1.45927563016994E-5 10-11 0.0 2.91855126033988E-4 0.0 7.2963781508497E-5 1.45927563016994E-5 12-13 0.0 2.91855126033988E-4 0.0 1.021492941118958E-4 1.45927563016994E-5 14-15 1.45927563016994E-5 3.356333949390862E-4 0.0 1.021492941118958E-4 2.91855126033988E-5 16-17 2.91855126033988E-5 3.502261512407856E-4 0.0 1.167420504135952E-4 3.64818907542485E-5 18-19 2.91855126033988E-5 3.64818907542485E-4 0.0 1.167420504135952E-4 5.1074647055947904E-5 20-21 2.91855126033988E-5 4.085971764475832E-4 0.0 1.167420504135952E-4 5.83710252067976E-5 22-23 2.91855126033988E-5 4.742645798052305E-4 0.0 1.167420504135952E-4 6.56674033576473E-5 24-25 2.91855126033988E-5 5.545247394645773E-4 0.0 1.313348067152946E-4 7.2963781508497E-5 26-27 2.91855126033988E-5 5.691174957662766E-4 0.0 1.970022100729419E-4 8.75565378101964E-5 28-29 2.91855126033988E-5 5.691174957662766E-4 0.0 5.83710252067976E-4 8.75565378101964E-5 30-31 2.91855126033988E-5 6.274885209730742E-4 0.0 0.0019846148570311184 8.75565378101964E-5 32-33 2.91855126033988E-5 6.420812772747735E-4 0.0 0.005267985024913484 8.75565378101964E-5 34-35 2.91855126033988E-5 7.734160839900682E-4 0.0 0.009208029226372321 8.75565378101964E-5 36-37 2.91855126033988E-5 9.193436470070622E-4 0.0 0.015336986873086069 8.75565378101964E-5 38-39 2.91855126033988E-5 9.777146722138598E-4 0.0 0.02962329529244978 8.75565378101964E-5 40-41 2.91855126033988E-5 0.0010214929411189579 0.0 0.04509161697225114 8.75565378101964E-5 42-43 2.91855126033988E-5 0.001043382075571507 0.0 0.05489065282884229 1.0214929411189581E-4 44-45 2.91855126033988E-5 0.0011601241259851023 0.0 0.06503261845852337 1.167420504135952E-4 46-47 2.91855126033988E-5 0.001262273420096998 0.0 0.07645874664275401 1.167420504135952E-4 48-49 2.91855126033988E-5 0.0012695697982478477 0.0 0.08790676396143718 1.167420504135952E-4 50-51 2.91855126033988E-5 0.0013571263360580442 0.0 0.09861055070873369 1.167420504135952E-4 52-53 2.91855126033988E-5 0.0013571263360580442 0.0 0.12323582696785143 1.313348067152946E-4 54-55 2.91855126033988E-5 0.001408200983113992 0.0 0.15218055909227218 1.45927563016994E-4 56-57 2.91855126033988E-5 0.00145927563016994 0.0 0.1916904467791233 1.45927563016994E-4 58-59 2.91855126033988E-5 0.0014957575209241885 0.0 0.21925616343303347 1.45927563016994E-4 60-61 2.91855126033988E-5 0.0015614249242818358 0.0 0.23260123907093758 1.45927563016994E-4 62-63 2.91855126033988E-5 0.0016124995713377838 0.0 0.24312261636446283 1.45927563016994E-4 64-65 2.91855126033988E-5 0.0017803162688073268 0.0 0.2481206353977949 1.45927563016994E-4 66-67 2.91855126033988E-5 0.0017803162688073268 0.0 0.2531551363218812 1.45927563016994E-4 68-69 2.91855126033988E-5 0.001824094537712425 0.0 0.2580510060611013 1.5322394116784369E-4 70-71 3.64818907542485E-5 0.0018751691847683728 0.0 0.2617794552961855 1.6052031931869338E-4 72-73 5.83710252067976E-5 0.001897058319220922 0.0 0.264960676169956 1.6052031931869338E-4 74-75 5.83710252067976E-5 0.0019846148570311184 0.0 0.2673830737160381 1.6052031931869338E-4 76-77 5.83710252067976E-5 0.002094060529293864 0.0 0.2697325074806117 1.6052031931869338E-4 78-79 5.83710252067976E-5 0.002130542420048112 0.0 0.27132311791749697 1.6052031931869338E-4 80-81 5.83710252067976E-5 0.002137838798198962 0.0 0.2720819412451853 1.678166974695431E-4 82-83 5.83710252067976E-5 0.0021524315545006613 0.0 0.2725635022031414 1.751130756203928E-4 84-85 5.83710252067976E-5 0.0021743206889532104 0.0 0.2727532080350635 1.751130756203928E-4 86-87 6.56674033576473E-5 0.0022326917141600082 0.0 0.27284076457287365 1.970022100729419E-4 88 7.2963781508497E-5 0.002334841008271904 0.0 0.2728553573291754 2.042985882237916E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7640 0.0 47.476463 1 CTTATAC 10510 0.0 45.811184 1 TATACAC 13750 0.0 38.641552 3 GTATCAA 14330 0.0 37.8328 1 TTATACA 13850 0.0 35.60238 2 TCAACGC 16780 0.0 31.433214 4 ATCAACG 16825 0.0 31.400286 3 CAACGCA 17205 0.0 30.806782 5 TATCAAC 17560 0.0 30.040703 2 AACGCAG 18020 0.0 29.485088 6 TACACAT 18915 0.0 27.953478 5 ACGCAGA 20540 0.0 25.762913 7 ACACATC 19775 0.0 25.737038 6 CGTATAC 690 0.0 25.56695 1 CGCAGAG 20840 0.0 25.371403 8 ATACACA 21920 0.0 25.259706 4 ACATCTC 21035 0.0 24.215837 8 CACATCT 21920 0.0 23.179264 7 GTGGTAT 3930 0.0 21.458914 1 TGGTATC 3865 0.0 21.26317 2 >>END_MODULE