##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140156_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6203646 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.559535473171746 32.0 28.0 33.0 18.0 34.0 2 31.136542929754533 33.0 30.0 33.0 27.0 34.0 3 32.36915581578962 33.0 33.0 33.0 30.0 34.0 4 32.462932926862685 33.0 33.0 34.0 31.0 34.0 5 32.93405926127958 33.0 33.0 34.0 32.0 34.0 6 36.75527649385539 38.0 37.0 38.0 34.0 38.0 7 36.96344278832158 38.0 38.0 38.0 35.0 38.0 8 37.16175681204247 38.0 38.0 38.0 36.0 38.0 9 37.20403356348831 38.0 38.0 38.0 36.0 38.0 10-11 37.28179646291874 38.0 38.0 38.0 36.5 38.0 12-13 37.32524994172782 38.0 38.0 38.0 37.0 38.0 14-15 37.32568726519857 38.0 38.0 38.0 37.0 38.0 16-17 37.37242381335105 38.0 38.0 38.0 37.0 38.0 18-19 37.37175646386012 38.0 38.0 38.0 37.0 38.0 20-21 37.39101053824 38.0 38.0 38.0 37.0 38.0 22-23 37.3284120740574 38.0 38.0 38.0 37.0 38.0 24-25 37.396069888397605 38.0 38.0 38.0 37.0 38.0 26-27 37.36017889917378 38.0 38.0 38.0 37.0 38.0 28-29 37.32707995712325 38.0 38.0 38.0 37.0 38.0 30-31 37.339567248297286 38.0 38.0 38.0 37.0 38.0 32-33 37.318609106446345 38.0 38.0 38.0 37.0 38.0 34-35 37.223527356448784 38.0 38.0 38.0 37.0 38.0 36-37 37.23989867157934 38.0 38.0 38.0 37.0 38.0 38-39 37.21476171233655 38.0 38.0 38.0 37.0 38.0 40-41 37.27156044157003 38.0 38.0 38.0 37.0 38.0 42-43 37.25534563288295 38.0 38.0 38.0 37.0 38.0 44-45 37.22139248782253 38.0 38.0 38.0 37.0 38.0 46-47 37.19208080438598 38.0 38.0 38.0 37.0 38.0 48-49 37.135861561191305 38.0 38.0 38.0 36.5 38.0 50-51 37.09731091727472 38.0 38.0 38.0 36.0 38.0 52-53 37.00869414534329 38.0 38.0 38.0 36.0 38.0 54-55 37.04943463313574 38.0 38.0 38.0 36.0 38.0 56-57 37.01851825942828 38.0 38.0 38.0 36.0 38.0 58-59 36.99528321990071 38.0 38.0 38.0 36.0 38.0 60-61 36.98800422268652 38.0 38.0 38.0 36.0 38.0 62-63 37.00033207110742 38.0 38.0 38.0 36.0 38.0 64-65 37.00987274720998 38.0 38.0 38.0 36.0 38.0 66-67 37.00545854872598 38.0 38.0 38.0 36.0 38.0 68-69 36.988104322434076 38.0 38.0 38.0 36.0 38.0 70-71 36.99056467298452 38.0 38.0 38.0 36.0 38.0 72-73 37.00161468611512 38.0 38.0 38.0 36.0 38.0 74-75 36.953218004164555 38.0 38.0 38.0 36.0 38.0 76-77 36.96763762690006 38.0 38.0 38.0 36.0 38.0 78-79 36.98217193552655 38.0 38.0 38.0 36.0 38.0 80-81 36.97485229505594 38.0 38.0 38.0 36.0 38.0 82-83 36.93546456714401 38.0 38.0 38.0 36.0 38.0 84-85 36.936909728829335 38.0 38.0 38.0 36.0 38.0 86-87 36.9358456477312 38.0 38.0 38.0 36.0 38.0 88-89 36.925822352277706 38.0 38.0 38.0 36.0 38.0 90-91 36.93975120538201 38.0 38.0 38.0 36.0 38.0 92-93 36.92385672519891 38.0 38.0 38.0 35.0 38.0 94-95 36.861564566731225 38.0 38.0 38.0 35.0 38.0 96-97 36.89588210628523 38.0 38.0 38.0 35.0 38.0 98-99 36.923624722398 38.0 38.0 38.0 35.0 38.0 100 35.49955025911577 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 14.0 20 54.0 21 131.0 22 440.0 23 1273.0 24 3169.0 25 6535.0 26 11685.0 27 19039.0 28 28818.0 29 41451.0 30 54971.0 31 70600.0 32 88853.0 33 118274.0 34 172504.0 35 301339.0 36 828145.0 37 4456338.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.91368946583992 21.532756704686243 14.108574215872407 24.44497961360142 2 14.431588033649517 20.479253130095707 42.951065420765666 22.13809341548911 3 17.68063490405481 26.947717519665048 30.945221568090766 24.426426008189377 4 12.444697843816362 18.66454017524533 38.48446542565453 30.40629655528378 5 13.164323044867485 37.53550734519668 36.08402220242741 13.216147407508425 6 29.128193323732525 38.41771435700876 18.75933926597359 13.694753053285117 7 25.707398520160563 33.11373666389088 22.923084263673328 18.255780552275226 8 23.78307853156031 37.44236856841928 21.494247092758034 17.280305807262376 9 24.98285685546854 17.25461123990634 21.009467658212603 36.753064246412514 10-11 23.866545576585125 26.91917785121846 29.11283138979884 20.101445182397576 12-13 24.968188062310453 24.198302095251726 29.06053150034673 21.772978342091086 14-15 22.11928275726887 25.734116679127084 26.292248139239412 25.85435242436464 16-17 21.80493535575692 29.25802020295807 26.901551120099377 22.03549332118564 18-19 21.88045546119169 27.920403582022573 28.73423951012034 21.464901446665397 20-21 22.52806851538711 27.10955143570557 28.588167780810082 21.77421226809724 22-23 22.152419893182852 27.60599944126612 28.482144454791964 21.759436210759063 24-25 22.142201285029937 27.875447744886035 28.617932236591958 21.364418733492073 26-27 22.064584095653125 28.192704124955227 28.59931230189258 21.143399477499063 28-29 21.912521586063374 27.864775238013213 28.661082636135944 21.56162053978747 30-31 22.659106727306966 27.45141166103992 28.594095521303352 21.295386090349762 32-33 22.09495565085679 27.75393090635398 28.774844204692734 21.3762692380965 34-35 22.056926759013187 27.324536342497474 29.003534519719476 21.615002378769866 36-37 21.78768478286415 27.771599633827392 28.8706948309794 21.570020752329057 38-39 21.767265440024453 27.117714989984123 29.248747708525226 21.8662718614662 40-41 21.958212348554834 26.98927247066512 29.305950688260285 21.746564492519756 42-43 22.240237898385747 26.932841739259217 29.212982262084257 21.613938100270776 44-45 21.799438068675947 27.38983449031112 29.046803152498953 21.763924288513984 46-47 22.440893466412028 26.912257384418957 28.41515965151336 22.231689497655655 48-49 22.16170191061632 26.99665375718062 28.567984395797374 22.27365993640568 50-51 21.795376019729908 27.333689410931942 28.836332908687694 22.034601660650452 52-53 22.004105367739655 27.422911833338738 29.06131962013754 21.51166317878407 54-55 21.896304638219082 27.470691223488863 28.569239226686538 22.063764911605514 56-57 22.309770557151968 27.968749945819877 27.953570842806908 21.767908654221245 58-59 21.610570138793804 28.551596394211288 28.613377031818903 21.224456435176002 60-61 22.073769963788763 29.095500577119864 27.66807494004395 21.16265451904742 62-63 21.55817639888839 29.573460438891786 27.64208743233203 21.226275729887796 64-65 21.552393365575682 29.43632270803495 27.695862411178062 21.31542151521131 66-67 21.707252125271104 29.36246118088968 27.591484841484526 21.33880185235469 68-69 21.835119301082443 28.875852884973042 27.843373530392622 21.445654283551892 70-71 21.970046795267777 28.211253999173007 28.080809149836767 21.737890055722445 72-73 22.20726877096002 27.918526666956694 28.08526518175506 21.788939380328227 74-75 21.971432447107432 28.009664119231083 28.081658653763945 21.93724477989754 76-77 22.189184805658144 27.828399419715772 27.973154334125955 22.009261440500126 78-79 22.177578316847324 27.858799113639687 27.968482431818174 21.99514013769481 80-81 22.183454608175644 27.84938791701493 27.909305642366323 22.057851832443106 82-83 22.22937894863048 27.755276999300428 28.012948705154113 22.00239534691498 84-85 22.346252532636495 27.728284557900114 27.978082925705255 21.94737998375814 86-87 22.149797203599768 27.78538713238924 28.04995211368827 22.014863550322726 88-89 22.275531282819006 27.802017803866114 27.949366632718604 21.97308428059628 90-91 22.32804984132157 27.75015796331778 28.014218486381953 21.9075737089787 92-93 22.371095896658385 27.757468223716426 27.911239578928775 21.960196300696413 94-95 22.181127315562875 27.904979828411186 27.91464342677244 21.999249429253496 96-97 22.251084312110493 27.90751435301785 28.076391434688148 21.76500990018351 98-99 23.28553412766935 29.87751161018059 28.280825670174636 18.556128591975426 100 22.20116072884273 30.80805733371448 22.299971269564935 24.69081066787786 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1070.0 1 993.5 2 1271.0 3 1793.0 4 2373.0 5 3372.5 6 4244.5 7 5347.5 8 6675.0 9 7354.0 10 7338.0 11 7411.5 12 8258.0 13 10210.5 14 14042.5 15 18462.5 16 21746.0 17 23566.0 18 23641.0 19 22200.0 20 20299.0 21 18927.0 22 19325.0 23 22281.0 24 27751.0 25 35963.0 26 47120.5 27 59882.0 28 72131.5 29 85837.5 30 99648.5 31 113150.0 32 128539.5 33 143382.0 34 158146.5 35 172281.5 36 187886.0 37 203462.0 38 214428.5 39 222855.0 40 233692.0 41 242963.0 42 250819.0 43 273289.0 44 299992.0 45 308522.5 46 296628.0 47 278858.5 48 264283.5 49 252534.0 50 244650.5 51 235738.5 52 222945.5 53 207992.0 54 193311.5 55 177455.5 56 160854.5 57 143905.0 58 126619.5 59 109694.0 60 91204.5 61 72970.0 62 56853.0 63 43517.0 64 32537.0 65 23496.0 66 17095.0 67 12891.0 68 9743.5 69 7060.0 70 5207.5 71 3770.0 72 2589.0 73 1802.0 74 1243.5 75 818.0 76 561.0 77 363.5 78 229.0 79 148.5 80 105.0 81 70.5 82 44.0 83 30.5 84 23.5 85 17.0 86 12.0 87 8.0 88 3.5 89 1.0 90 0.0 91 0.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.018053899271492924 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.7079349889370533E-4 26-27 2.4184574739647007E-4 28-29 0.0036610494019103258 30-31 0.006206563137857533 32-33 0.004253119129219947 34-35 0.0021720493236740894 36-37 0.0 38-39 0.0 40-41 2.876423583123053E-4 42-43 8.264492179600307E-6 44-45 0.0 46-47 2.5146659509368553E-4 48-49 0.0015284426714509455 50-51 0.002780627377563959 52-53 0.0 54-55 0.0029616775285903046 56-57 0.03987799862705995 58-59 0.06296348301246973 60-61 0.04340154841665276 62-63 0.01407859832162172 64-65 3.7584608995231854E-4 66-67 0.0 68-69 1.8318710575272542E-5 70-71 0.0029892524306706957 72-73 0.005065837049535977 74-75 0.004692390974575409 76-77 0.0034487076111923204 78-79 0.00841936601110641 80-81 0.0164502714441143 82-83 0.044057171121932505 84-85 0.020087145627534053 86-87 0.002215100046346709 88-89 0.0014770072959102174 90-91 9.194299452612275E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 209.0 22-23 399.0 24-25 499.0 26-27 1387.0 28-29 3475.0 30-31 10899.0 32-33 13431.0 34-35 18219.0 36-37 28900.0 38-39 33873.0 40-41 33524.0 42-43 37623.0 44-45 44624.0 46-47 44700.0 48-49 42098.0 50-51 37710.0 52-53 35435.0 54-55 37166.0 56-57 39349.0 58-59 43235.0 60-61 48734.0 62-63 48142.0 64-65 57277.0 66-67 66458.0 68-69 66215.0 70-71 87236.0 72-73 48062.0 74-75 44131.0 76-77 45929.0 78-79 48085.0 80-81 47742.0 82-83 44851.0 84-85 44219.0 86-87 45705.0 88-89 47267.0 90-91 48990.0 92-93 48398.0 94-95 57157.0 96-97 186901.0 98-99 412962.0 100-101 4152391.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.20077300123556 #Duplication Level Percentage of deduplicated Percentage of total 1 90.16547097035445 77.7233329566502 2 7.062943185126147 12.176623244433653 3 1.6118873405640204 4.168378042425732 4 0.5685094246117459 1.9602380744008059 5 0.24275534706586066 1.0462849283630204 6 0.12530610897549743 0.6480890073278964 7 0.0678789086102028 0.40958500748757937 8 0.04070202154151161 0.28068365756729935 9 0.02492711418510119 0.1933862860301208 >10 0.08733522125344853 1.1215364766792084 >50 0.001411002261782571 0.08071667384037554 >100 7.886498629207199E-4 0.13224536933212327 >500 5.647039288166567E-5 0.03409887938830678 >1k 2.8235194493082243E-5 0.024801396073756535 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6119552920975826E-5 0.0 0.0 0.0 3 0.0 1.6119552920975826E-5 0.0 0.0 0.0 4 0.0 1.6119552920975826E-5 0.0 0.0 0.0 5 0.0 1.6119552920975826E-5 0.0 0.0 0.0 6 0.0 1.6119552920975826E-5 0.0 0.0 0.0 7 1.6119552920975826E-5 1.6119552920975826E-5 0.0 0.0 0.0 8 1.6119552920975826E-5 6.44782116839033E-5 0.0 0.0 0.0 9 3.223910584195165E-5 1.773150821307341E-4 0.0 3.223910584195165E-5 0.0 10-11 4.0298882302439564E-5 1.773150821307341E-4 0.0 6.44782116839033E-5 0.0 12-13 4.835865876292748E-5 1.773150821307341E-4 0.0 6.44782116839033E-5 0.0 14-15 6.44782116839033E-5 3.1433128195902866E-4 0.0 7.253798814439122E-5 8.059776460487913E-6 16-17 6.44782116839033E-5 3.3851061134049237E-4 0.0 8.059776460487913E-5 2.417932938146374E-5 18-19 6.44782116839033E-5 3.7074971718244404E-4 0.0 1.0477709398634287E-4 3.223910584195165E-5 20-21 6.44782116839033E-5 4.0298882302439566E-4 0.0 1.208966469073187E-4 3.223910584195165E-5 22-23 8.059776460487913E-5 4.271681524058594E-4 0.0 1.4507597628878245E-4 4.835865876292748E-5 24-25 9.671731752585496E-5 4.997061405502506E-4 0.0 1.6925530567024619E-4 7.253798814439122E-5 26-27 9.671731752585496E-5 5.48064799313178E-4 0.0 2.4179329381463738E-4 9.671731752585496E-5 28-29 9.671731752585496E-5 5.48064799313178E-4 0.0 5.964234580761056E-4 9.671731752585496E-5 30-31 9.671731752585496E-5 6.286625639180572E-4 0.0 0.0018215094800702685 9.671731752585496E-5 32-33 9.671731752585496E-5 6.286625639180572E-4 0.0 0.004320040182821522 9.671731752585496E-5 34-35 9.671731752585496E-5 7.41499434364888E-4 0.0 0.007576189872858638 9.671731752585496E-5 36-37 9.671731752585496E-5 8.543363048117188E-4 0.0 0.01347594624193579 9.671731752585496E-5 38-39 9.671731752585496E-5 8.704558577326946E-4 0.0 0.028362353364456964 1.0477709398634287E-4 40-41 1.289564233678066E-4 0.0010477709398634288 0.0 0.04488489510845719 1.289564233678066E-4 42-43 1.289564233678066E-4 0.0010719502692448923 0.0 0.0548145397077783 1.289564233678066E-4 44-45 1.4507597628878245E-4 0.0011525480338497715 0.0 0.06534060776517552 1.3701619982829454E-4 46-47 1.773150821307341E-4 0.0012089664690731869 0.0 0.07680966966844982 1.4507597628878245E-4 48-49 1.9343463505170993E-4 0.001217026245533675 0.0 0.08779514498409484 1.773150821307341E-4 50-51 2.0955418797268574E-4 0.0014346402099668484 0.0 0.09929644599321108 1.773150821307341E-4 52-53 2.0955418797268574E-4 0.0014346402099668484 0.0 0.12919015688516075 1.9343463505170993E-4 54-55 2.1761396443317364E-4 0.0014426999864273365 0.0 0.16589437888622272 2.0955418797268574E-4 56-57 2.2567374089366157E-4 0.0014507597628878243 0.0 0.21656619349331024 2.0955418797268574E-4 58-59 2.3373351735414948E-4 0.0014588195393483122 0.0 0.2513118898144736 2.0955418797268574E-4 60-61 2.4179329381463738E-4 0.001482998868729776 0.0 0.26562605280830015 2.2567374089366157E-4 62-63 2.4179329381463738E-4 0.001482998868729776 0.0 0.27594256667772465 2.2567374089366157E-4 64-65 2.498530702751253E-4 0.0016441943979395343 0.0 0.2809154487538457 2.2567374089366157E-4 66-67 2.579128467356132E-4 0.0016603139508605102 0.0 0.28577549395951996 2.2567374089366157E-4 68-69 2.579128467356132E-4 0.0016844932802419737 0.0 0.2904985229653658 2.2567374089366157E-4 70-71 2.74032399656589E-4 0.0017167323860839256 0.0 0.295044236889081 2.2567374089366157E-4 72-73 2.74032399656589E-4 0.0017247921625444134 0.0 0.2983890441201835 2.4179329381463738E-4 74-75 2.74032399656589E-4 0.0017328519390049013 0.0 0.30121802565781475 2.4179329381463738E-4 76-77 2.74032399656589E-4 0.0018376290329912442 0.0 0.3040228278660646 2.4179329381463738E-4 78-79 2.74032399656589E-4 0.0018859876917541717 0.0 0.30571538092276707 2.4179329381463738E-4 80-81 2.74032399656589E-4 0.0018940474682146596 0.0 0.30631180438084316 2.4179329381463738E-4 82-83 2.74032399656589E-4 0.0019021072446751474 0.0 0.30677927141555145 2.4179329381463738E-4 84-85 2.901519525775649E-4 0.0019424061269775871 0.0 0.30698882560352414 2.4179329381463738E-4 86-87 3.062715054985407E-4 0.0019988245622010025 0.0 0.3070774831445895 2.4179329381463738E-4 88 3.062715054985407E-4 0.0020955418797268576 0.0 0.3070774831445895 2.4179329381463738E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7890 0.0 51.025585 1 CTTATAC 9940 0.0 46.245056 1 TATACAC 12825 0.0 37.744564 3 GTATCAA 14715 0.0 37.538803 1 TTATACA 13350 0.0 35.4293 2 TCAACGC 17720 0.0 30.538944 4 ATCAACG 17830 0.0 30.35054 3 TATCAAC 18260 0.0 29.89844 2 CAACGCA 18190 0.0 29.702684 5 AACGCAG 18840 0.0 28.791803 6 TACACAT 17695 0.0 28.08411 5 ACACATC 18385 0.0 25.6996 6 ACGCAGA 21660 0.0 24.964035 7 ACATCTC 18920 0.0 24.927532 8 ATACACA 20620 0.0 24.870352 4 CGCAGAG 21865 0.0 24.749605 8 CACATCT 20165 0.0 23.324642 7 GTGGTAT 3835 0.0 23.16686 1 CATCTCC 20905 0.0 22.29371 9 TGGTATC 3680 0.0 22.15991 2 >>END_MODULE