##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140155_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5086639 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.74077381941199 33.0 28.0 33.0 18.0 34.0 2 31.164359806150976 33.0 31.0 33.0 27.0 34.0 3 32.364440448791434 33.0 33.0 33.0 30.0 34.0 4 32.43776784631266 33.0 33.0 34.0 31.0 34.0 5 32.90548297215509 33.0 33.0 34.0 32.0 34.0 6 36.7188019436803 38.0 37.0 38.0 34.0 38.0 7 36.924838188831565 38.0 38.0 38.0 35.0 38.0 8 37.13389548580113 38.0 38.0 38.0 36.0 38.0 9 37.1793530069659 38.0 38.0 38.0 36.0 38.0 10-11 37.2612968995834 38.0 38.0 38.0 36.0 38.0 12-13 37.3076726105391 38.0 38.0 38.0 36.5 38.0 14-15 37.30935092897295 38.0 38.0 38.0 37.0 38.0 16-17 37.35738323478431 38.0 38.0 38.0 37.0 38.0 18-19 37.360631450354546 38.0 38.0 38.0 37.0 38.0 20-21 37.37763001157903 38.0 38.0 38.0 37.0 38.0 22-23 37.30916856979633 38.0 38.0 38.0 37.0 38.0 24-25 37.38199174526834 38.0 38.0 38.0 37.0 38.0 26-27 37.34599484457762 38.0 38.0 38.0 37.0 38.0 28-29 37.30219740385386 38.0 38.0 38.0 37.0 38.0 30-31 37.3192044670206 38.0 38.0 38.0 37.0 38.0 32-33 37.30639835481785 38.0 38.0 38.0 37.0 38.0 34-35 37.215218750369075 38.0 38.0 38.0 37.0 38.0 36-37 37.23028342828766 38.0 38.0 38.0 37.0 38.0 38-39 37.200442534997634 38.0 38.0 38.0 37.0 38.0 40-41 37.25789903456099 38.0 38.0 38.0 37.0 38.0 42-43 37.23763496399035 38.0 38.0 38.0 37.0 38.0 44-45 37.19428312060826 38.0 38.0 38.0 37.0 38.0 46-47 37.152247824344386 38.0 38.0 38.0 37.0 38.0 48-49 37.08948155249986 38.0 38.0 38.0 36.0 38.0 50-51 37.049309642784664 38.0 38.0 38.0 36.0 38.0 52-53 36.956524198762494 38.0 38.0 38.0 36.0 38.0 54-55 36.998811491782305 38.0 38.0 38.0 36.0 38.0 56-57 36.96783349585401 38.0 38.0 38.0 36.0 38.0 58-59 36.9459250054207 38.0 38.0 38.0 36.0 38.0 60-61 36.941106005138124 38.0 38.0 38.0 36.0 38.0 62-63 36.953512876929295 38.0 38.0 38.0 36.0 38.0 64-65 36.96846653786571 38.0 38.0 38.0 36.0 38.0 66-67 36.96948162668885 38.0 38.0 38.0 36.0 38.0 68-69 36.96138153024546 38.0 38.0 38.0 36.0 38.0 70-71 36.974580317464415 38.0 38.0 38.0 36.0 38.0 72-73 36.99403128201914 38.0 38.0 38.0 36.0 38.0 74-75 36.945949988398226 38.0 38.0 38.0 36.0 38.0 76-77 36.96156224681485 38.0 38.0 38.0 36.0 38.0 78-79 36.97135398794536 38.0 38.0 38.0 36.0 38.0 80-81 36.955724755002365 38.0 38.0 38.0 36.0 38.0 82-83 36.917436117848496 38.0 38.0 38.0 36.0 38.0 84-85 36.92081165092507 38.0 38.0 38.0 36.0 38.0 86-87 36.92177325980686 38.0 38.0 38.0 36.0 38.0 88-89 36.907204438083426 38.0 38.0 38.0 35.0 38.0 90-91 36.92165945621587 38.0 38.0 38.0 35.5 38.0 92-93 36.906959748938014 38.0 38.0 38.0 35.0 38.0 94-95 36.8375259864128 38.0 38.0 38.0 35.0 38.0 96-97 36.87312980002343 38.0 38.0 38.0 35.0 38.0 98-99 36.901906227924854 38.0 38.0 38.0 35.0 38.0 100 35.43354949018448 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 12.0 20 32.0 21 116.0 22 347.0 23 1070.0 24 2612.0 25 5389.0 26 9813.0 27 16042.0 28 24726.0 29 35657.0 30 47080.0 31 60706.0 32 76516.0 33 100422.0 34 145053.0 35 251689.0 36 691047.0 37 3618306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.325035843904 21.528518143316244 14.431199068776063 23.71524694400369 2 14.4524331769779 20.74393856421076 42.97878239393901 21.82484586487233 3 17.65890994033585 27.45842588789965 30.964984934059604 23.9176792377049 4 12.196894648902742 18.85783520316657 38.875788118637864 30.06948202929282 5 12.9165053781092 37.97114361762256 35.85212160721451 13.260229397053733 6 28.585987721951568 38.7817378036853 18.974572404292893 13.657702070070238 7 25.636495925895268 33.70604833564953 22.81182132248819 17.84563441596701 8 23.989652106233606 37.30534052052839 21.349165922724218 17.355841450513786 9 25.29747049082901 17.359321154892257 21.071399012196462 36.271809342082264 10-11 23.687065270407434 27.351724783299936 28.83951465791065 20.121695288381975 12-13 24.90222915367102 24.83159312072274 28.883964440959936 21.382213284646305 14-15 22.160713587105356 26.241227262245264 26.548699445744035 25.04935970490534 16-17 21.428687980413 29.70188173369488 27.188955221709264 21.680475064182854 18-19 21.408841869847652 28.142993831486763 29.26708579083359 21.181078507831987 20-21 22.43685262780534 27.23734356733467 29.11426523179111 21.211538573068882 22-23 22.099010473288104 27.52400286218692 29.001898327091265 21.375088337433713 24-25 22.00375038120224 27.622499377197627 29.27993034837805 21.093819893222083 26-27 21.895743134037996 27.846197652945264 29.216007733713884 21.042051479302856 28-29 21.378754238205882 27.50429513168573 29.397566162536027 21.719384467572358 30-31 22.169999877911565 27.443403148227567 29.393785619793768 20.9928113540671 32-33 22.184570451814007 27.339430841772263 29.615785540917756 20.860213165495974 34-35 21.364288736269632 27.55392510208222 30.004501816306306 21.077284345341837 36-37 21.828331492520327 27.581032681200252 29.395522822340723 21.195113003938697 38-39 21.4286691626573 27.412365091113777 29.70870377108183 21.450261975147093 40-41 21.500112317709867 27.323556918444275 29.885154513488427 21.29117625035743 42-43 21.797493116793003 27.198013833172507 29.82064213594865 21.183850914085845 44-45 21.40726920722628 27.725178136568278 29.526346396919482 21.34120625928596 46-47 21.99226439650345 27.247150866065567 28.8525178753967 21.908066862034286 48-49 21.80354404277289 27.388116093410375 29.057426935949053 21.750912927867677 50-51 21.51509830634466 27.79855134317267 29.039826925029743 21.646523425452926 52-53 21.60348760312819 28.047244356588163 29.170765178997105 21.17850286128654 54-55 21.572011763481765 28.149901131302276 28.73409777368036 21.5439893315356 56-57 21.925179820124825 28.504422694796805 28.152430726400723 21.417966758677647 58-59 21.25079272443059 28.9409244646326 28.749799061706938 21.058483749229868 60-61 21.821424932304552 29.367857831967864 28.04766106530633 20.76305617042126 62-63 21.205477628623225 29.676209792226103 28.03919141060683 21.079121168543843 64-65 21.168256544847473 29.49907012129756 28.188409737224724 21.144263596630246 66-67 21.320144235824927 29.563058249177704 28.15541011181774 20.96138740317963 68-69 21.472255054999255 29.298431886946517 28.182665886151586 21.046647171902634 70-71 21.582530153343495 28.58629411747817 28.259325931731855 21.571849797446475 72-73 21.783153682440464 28.387034849947423 28.255548032001805 21.574263435610305 74-75 21.558480536634285 28.51077211918772 28.472032499882687 21.458714844295308 76-77 21.75103029540378 28.024248669356343 28.439809557841077 21.784911477398794 78-79 21.76830202632853 28.0731905999612 28.20991220226212 21.948595171448147 80-81 21.996324169440015 28.277134024862434 28.11376781597248 21.61277398972507 82-83 22.026491477011866 27.935359228982687 28.300189399736286 21.737959894269157 84-85 21.976775058625993 27.934278567780453 28.165062022667236 21.923884350926322 86-87 21.763913779246515 28.271404182245675 28.144708795295596 21.819973243212214 88-89 22.085213031317423 28.221008730658376 28.15717076385034 21.536607474173866 90-91 22.186109358368867 28.147485292899166 28.225001115381428 21.441404233350543 92-93 21.990616621983914 27.951059496803467 28.090379459682406 21.967944421530213 94-95 21.978707289180242 28.328526242595252 28.094862647503323 21.59790382072118 96-97 22.297970633657123 28.17639143115227 28.264535492057103 21.261102443133506 98-99 22.954084965654232 30.23385394220594 28.580793799164756 18.231267292975076 100 21.85075543820384 31.196413932998446 22.573052149683217 24.379778479114496 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1343.0 1 1158.0 2 1291.0 3 1793.0 4 2388.5 5 3377.0 6 4211.5 7 5189.5 8 6390.5 9 7189.0 10 7326.0 11 7326.0 12 8301.5 13 10649.5 14 14917.0 15 19786.5 16 23402.5 17 25364.0 18 25171.5 19 23133.5 20 20456.5 21 18215.0 22 17704.0 23 19811.0 24 24457.0 25 31307.0 26 41022.0 27 52122.0 28 62300.5 29 73711.5 30 85137.0 31 96439.0 32 110562.0 33 125225.0 34 139548.5 35 153042.0 36 168063.5 37 181109.5 38 187404.0 39 192354.0 40 199252.0 41 204147.5 42 206467.5 43 210391.0 44 213662.0 45 218396.5 46 237696.0 47 253180.0 48 249338.0 49 235731.5 50 216116.5 51 196233.0 52 178621.0 53 164752.5 54 151994.0 55 138190.0 56 124002.5 57 109488.5 58 95514.0 59 83030.0 60 68855.0 61 54216.5 62 41474.0 63 31147.5 64 23517.5 65 17092.5 66 12066.0 67 8801.0 68 6562.0 69 4722.5 70 3349.5 71 2352.0 72 1663.0 73 1180.0 74 790.5 75 523.0 76 326.5 77 204.5 78 144.5 79 91.0 80 57.0 81 39.0 82 28.0 83 18.5 84 11.0 85 6.5 86 4.5 87 3.0 88 1.0 89 0.0 90 0.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.019737984158105185 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.0307489121647704E-4 26-27 3.3429794678134E-4 28-29 0.003983417965392064 30-31 0.006320630834400064 32-33 0.004508406599873192 34-35 0.00208715318636082 36-37 0.0 38-39 0.0 40-41 4.522840343735866E-4 42-43 0.0 44-45 0.0 46-47 2.9817086568358704E-4 48-49 0.0013588061425505891 50-51 0.0026562499836598795 52-53 0.0 54-55 0.0031606437488883392 56-57 0.0408703274797764 58-59 0.06531202459534287 60-61 0.0448139160644887 62-63 0.01425042595311216 64-65 4.199577168888206E-4 66-67 0.0 68-69 1.1320561626646971E-5 70-71 0.002848013791736465 72-73 0.005288081026446811 74-75 0.004504130511121204 76-77 0.0034426084525534363 78-79 0.008344321221838815 80-81 0.016618553209591328 82-83 0.04624502963830366 84-85 0.02086022217619572 86-87 0.0019093798346776574 88-89 0.0015760655905542984 90-91 5.098883930790809E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 181.0 22-23 444.0 24-25 496.0 26-27 1241.0 28-29 3358.0 30-31 9730.0 32-33 12572.0 34-35 17395.0 36-37 27151.0 38-39 31554.0 40-41 31063.0 42-43 35408.0 44-45 41973.0 46-47 43222.0 48-49 40245.0 50-51 36025.0 52-53 32146.0 54-55 34112.0 56-57 36979.0 58-59 23825.0 60-61 47869.0 62-63 44176.0 64-65 49028.0 66-67 55522.0 68-69 57298.0 70-71 69725.0 72-73 42505.0 74-75 39360.0 76-77 40939.0 78-79 42301.0 80-81 42772.0 82-83 40199.0 84-85 39278.0 86-87 40467.0 88-89 42703.0 90-91 43353.0 92-93 43699.0 94-95 49377.0 96-97 167277.0 98-99 328635.0 100-101 3300998.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.95078239021085 #Duplication Level Percentage of deduplicated Percentage of total 1 90.4385932541003 78.63706441714065 2 6.979934047027292 12.138214528421877 3 1.5673038023792298 4.0883487558007925 4 0.5151572780615805 1.791733135258633 5 0.21553425977046617 0.937043625946849 6 0.1085294299816144 0.5662031309558988 7 0.05284781412562482 0.32166111500848604 8 0.034305707097650115 0.23863264580720692 9 0.020425859193859093 0.15984399941084965 >10 0.06482255693336497 0.8141873388033645 >50 0.0013552044821432284 0.08523992486088497 >100 0.00115809504018252 0.1970401008731592 >500 3.269180678736456E-5 0.02478728171138352 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 1.96593467710211E-5 7 0.0 0.0 0.0 9.82967338551055E-5 1.96593467710211E-5 8 0.0 0.0 0.0 9.82967338551055E-5 1.96593467710211E-5 9 0.0 5.89780403130633E-5 0.0 1.179560806261266E-4 1.96593467710211E-5 10-11 0.0 5.89780403130633E-5 0.0 1.376154273971477E-4 1.96593467710211E-5 12-13 0.0 5.89780403130633E-5 0.0 1.376154273971477E-4 2.948902015653165E-5 14-15 0.0 1.0812640724061605E-4 0.0 1.376154273971477E-4 4.914836692755275E-5 16-17 1.96593467710211E-5 1.179560806261266E-4 0.0 1.376154273971477E-4 5.89780403130633E-5 18-19 1.96593467710211E-5 1.4744510078265827E-4 0.0 1.572747741681688E-4 5.89780403130633E-5 20-21 1.96593467710211E-5 1.96593467710211E-4 0.0 2.162528144812321E-4 5.89780403130633E-5 22-23 1.96593467710211E-5 2.2608248786674267E-4 0.0 2.7523085479429536E-4 6.880771369857385E-5 24-25 2.948902015653165E-5 2.555715080232743E-4 0.0 3.7352758864940094E-4 9.82967338551055E-5 26-27 3.93186935420422E-5 2.752308547942954E-4 0.0 4.718243225045064E-4 9.82967338551055E-5 28-29 3.93186935420422E-5 2.8506052817980595E-4 0.0 8.256925643828862E-4 9.82967338551055E-5 30-31 3.93186935420422E-5 3.538682418783798E-4 0.0 0.001857808269861494 9.82967338551055E-5 32-33 3.93186935420422E-5 3.538682418783798E-4 0.0 0.004148122168685452 9.82967338551055E-5 34-35 3.93186935420422E-5 4.128462821914431E-4 0.0 0.00697906810371249 9.82967338551055E-5 36-37 3.93186935420422E-5 4.718243225045064E-4 0.0 0.012287091731888189 9.82967338551055E-5 38-39 3.93186935420422E-5 4.718243225045064E-4 0.0 0.02840775608412549 1.0812640724061605E-4 40-41 3.93186935420422E-5 4.914836692755275E-4 0.0 0.04614048687158652 1.179560806261266E-4 42-43 3.93186935420422E-5 4.914836692755275E-4 0.0 0.05480042912422132 1.2778575401163714E-4 44-45 3.93186935420422E-5 5.111430160465486E-4 0.0 0.06524937193301902 1.4744510078265827E-4 46-47 3.93186935420422E-5 5.308023628175697E-4 0.0 0.07585558951598492 1.572747741681688E-4 48-49 3.93186935420422E-5 5.308023628175697E-4 0.0 0.08689431272791326 1.572747741681688E-4 50-51 3.93186935420422E-5 6.192694232871646E-4 0.0 0.09783473920598651 1.572747741681688E-4 52-53 3.93186935420422E-5 6.290990966726752E-4 0.0 0.1314522221844326 1.572747741681688E-4 54-55 3.93186935420422E-5 6.389287700581858E-4 0.0 0.17274668007696242 1.572747741681688E-4 56-57 5.89780403130633E-5 6.684177902147174E-4 0.0 0.2242738279638087 1.572747741681688E-4 58-59 7.86373870840844E-5 6.684177902147174E-4 0.0 0.4256248575926068 1.572747741681688E-4 60-61 7.86373870840844E-5 6.979068103712491E-4 0.0 0.6049574188378612 1.572747741681688E-4 62-63 7.86373870840844E-5 7.175661571422701E-4 0.0 0.611150113070733 1.572747741681688E-4 64-65 7.86373870840844E-5 8.256925643828862E-4 0.0 0.616831664287558 1.572747741681688E-4 66-67 7.86373870840844E-5 8.748409313104389E-4 0.0 0.6222576439963599 1.572747741681688E-4 68-69 7.86373870840844E-5 9.239892982379917E-4 0.0 0.627418222523753 1.572747741681688E-4 70-71 7.86373870840844E-5 9.436486450090128E-4 0.0 0.632116806402027 1.572747741681688E-4 72-73 7.86373870840844E-5 9.436486450090128E-4 0.0 0.6359012306554486 1.769341209391899E-4 74-75 7.86373870840844E-5 9.534783183945234E-4 0.0 0.6391941712395945 1.769341209391899E-4 76-77 7.86373870840844E-5 0.0010321157054786077 0.0 0.642398644763271 1.769341209391899E-4 78-79 7.86373870840844E-5 0.0010812640724061605 0.0 0.6440991782589643 1.769341209391899E-4 80-81 7.86373870840844E-5 0.001091093745791671 0.0 0.6447970850693356 1.769341209391899E-4 82-83 7.86373870840844E-5 0.0011205827659482026 0.0 0.6452492500450691 1.769341209391899E-4 84-85 7.86373870840844E-5 0.001179560806261266 0.0 0.6454556731861648 1.769341209391899E-4 86-87 7.86373870840844E-5 0.001179560806261266 0.0 0.645612947960333 1.769341209391899E-4 88 7.86373870840844E-5 0.0012385388465743293 0.0 0.6456326073071039 1.769341209391899E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8380 0.0 52.119213 1 GTATCAA 15505 0.0 38.79403 1 CTTATAC 9395 0.0 34.34527 1 ATCAACG 18765 0.0 31.596067 3 TCAACGC 18785 0.0 31.585083 4 TATCAAC 19210 0.0 31.178932 2 CAACGCA 19230 0.0 30.832045 5 AACGCAG 19780 0.0 30.039286 6 GTGGTAT 3670 0.0 28.418068 1 TATACAC 12310 0.0 27.833532 3 TGGTATC 3615 0.0 26.966318 2 ACGCAGA 22315 0.0 26.550508 7 TTATACA 12710 0.0 26.291698 2 CGCAGAG 22655 0.0 26.152044 8 GCAGAGT 25955 0.0 22.794193 9 TACACAT 15265 0.0 22.780106 5 ACACATC 14950 0.0 21.978931 6 ACATCTC 15355 0.0 21.454659 8 GAGTACT 14180 0.0 21.31143 12-13 CACATCT 15865 0.0 20.550346 7 >>END_MODULE