##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140154_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23949874 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.493086393690422 32.0 28.0 33.0 18.0 34.0 2 31.125817071104425 33.0 30.0 33.0 27.0 34.0 3 32.36331886338943 33.0 33.0 33.0 30.0 34.0 4 32.46818718127703 33.0 33.0 34.0 31.0 34.0 5 32.944648852849916 33.0 33.0 34.0 32.0 34.0 6 36.77144455958307 38.0 37.0 38.0 34.0 38.0 7 36.98149710516223 38.0 38.0 38.0 35.0 38.0 8 37.168900178765035 38.0 38.0 38.0 36.0 38.0 9 37.20691303010613 38.0 38.0 38.0 36.0 38.0 10-11 37.287010528740154 38.0 38.0 38.0 36.5 38.0 12-13 37.33235026622687 38.0 38.0 38.0 37.0 38.0 14-15 37.32983455361811 38.0 38.0 38.0 37.0 38.0 16-17 37.37423760559241 38.0 38.0 38.0 37.0 38.0 18-19 37.375653771706695 38.0 38.0 38.0 37.0 38.0 20-21 37.39308305808079 38.0 38.0 38.0 37.0 38.0 22-23 37.329385960873516 38.0 38.0 38.0 37.0 38.0 24-25 37.39802101857239 38.0 38.0 38.0 37.0 38.0 26-27 37.369575653155735 38.0 38.0 38.0 37.0 38.0 28-29 37.344169671536804 38.0 38.0 38.0 37.0 38.0 30-31 37.355325781316914 38.0 38.0 38.0 37.0 38.0 32-33 37.336588502643465 38.0 38.0 38.0 37.0 38.0 34-35 37.24804441418621 38.0 38.0 38.0 37.0 38.0 36-37 37.27161372676996 38.0 38.0 38.0 37.0 38.0 38-39 37.26191444743033 38.0 38.0 38.0 37.0 38.0 40-41 37.28435968593467 38.0 38.0 38.0 37.0 38.0 42-43 37.26097315546249 38.0 38.0 38.0 37.0 38.0 44-45 37.22666069098547 38.0 38.0 38.0 37.0 38.0 46-47 37.19494649256086 38.0 38.0 38.0 37.0 38.0 48-49 37.138496596176594 38.0 38.0 38.0 36.5 38.0 50-51 37.10197620162112 38.0 38.0 38.0 36.0 38.0 52-53 37.01241763000557 38.0 38.0 38.0 36.0 38.0 54-55 37.05698864809466 38.0 38.0 38.0 36.0 38.0 56-57 37.02689353368754 38.0 38.0 38.0 36.0 38.0 58-59 37.0105519165471 38.0 38.0 38.0 36.0 38.0 60-61 37.00480713916306 38.0 38.0 38.0 36.0 38.0 62-63 37.01704036812675 38.0 38.0 38.0 36.0 38.0 64-65 37.02804654861428 38.0 38.0 38.0 36.0 38.0 66-67 37.02639830155568 38.0 38.0 38.0 36.0 38.0 68-69 37.011842114636664 38.0 38.0 38.0 36.0 38.0 70-71 37.015372173089105 38.0 38.0 38.0 36.0 38.0 72-73 37.029675551601144 38.0 38.0 38.0 36.0 38.0 74-75 36.9714529867024 38.0 38.0 38.0 36.0 38.0 76-77 36.97591137304212 38.0 38.0 38.0 36.0 38.0 78-79 36.98108670131526 38.0 38.0 38.0 36.0 38.0 80-81 36.96180216427196 38.0 38.0 38.0 36.0 38.0 82-83 36.89779662842011 38.0 38.0 38.0 35.0 38.0 84-85 36.91653707839647 38.0 38.0 38.0 35.0 38.0 86-87 36.915839028042214 38.0 38.0 38.0 35.0 38.0 88-89 36.89786409817022 38.0 38.0 38.0 35.0 38.0 90-91 36.91525559289853 38.0 38.0 38.0 35.0 38.0 92-93 36.89425457813229 38.0 38.0 38.0 35.0 38.0 94-95 36.79995240747326 38.0 38.0 38.0 35.0 38.0 96-97 36.784677611189196 38.0 38.0 38.0 35.0 38.0 98-99 36.83173330923454 38.0 38.0 38.0 35.0 38.0 100 35.36811273820191 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 13.0 19 38.0 20 123.0 21 424.0 22 1442.0 23 4676.0 24 11652.0 25 23724.0 26 42813.0 27 69957.0 28 107279.0 29 154869.0 30 207959.0 31 268146.0 32 344854.0 33 456337.0 34 662313.0 35 1149240.0 36 3185685.0 37 1.7258329E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.808978786276704 20.99714595575743 14.07490494522017 24.118970312745695 2 14.78048764801784 20.463833113758408 42.34010644751799 22.415572790705767 3 18.03518465274598 26.498615399813797 30.51717098803944 24.94902895940079 4 12.69717744652853 18.28137383937803 38.68503859352245 30.33641012057099 5 13.457878734560358 37.45152897255326 35.83039727056602 13.260195022320367 6 29.760365336368782 38.20044731759341 18.5837512130544 13.455436132983415 7 26.381579293486052 32.951041830115685 22.765911002287528 17.901467874110736 8 24.162039432858812 37.1930140425791 21.14546406381929 17.499482460742797 9 25.508706225343815 17.189522583709625 20.942723957545663 36.359047233400894 10-11 24.141392142605845 26.917438062513398 28.90753412731942 20.03363566756134 12-13 25.147925621654625 24.257912588600675 28.93553009923977 21.658631690504926 14-15 22.275037856149055 25.719406707525895 26.422696420031272 25.58285901629378 16-17 21.8864637868241 29.01683741634716 27.057008734158682 22.039690062670058 18-19 21.969226226409376 27.87388359537925 28.834400130873338 21.322490047338036 20-21 22.711635543551097 27.059498574006362 28.673023400458696 21.555842481983845 22-23 22.345421086342984 27.20063965236263 28.58155560316208 21.87238365813231 24-25 22.261340789844848 27.27358143689432 28.725916200686896 21.739161572573934 26-27 22.172723633053476 27.445619086691618 28.709149699323895 21.672507580931008 28-29 22.108700064728456 27.277777071036425 28.811275598023816 21.8022472662113 30-31 22.223496214101054 26.964914159117164 28.92540576136065 21.88618386542113 32-33 21.913813805548255 27.458154357246844 28.732542434671345 21.895489402533553 34-35 22.229796024947003 27.289143375753373 28.742871824022448 21.73818877527718 36-37 22.10635266142139 27.245093920940793 28.946131992500383 21.70242142513743 38-39 21.916600602183074 27.249234871501283 28.905426651579997 21.928737874735646 40-41 22.27790158172105 27.1013708047877 28.94354244732285 21.6771851661684 42-43 22.300127741255654 27.084441133022153 28.755075583681833 21.86035554204036 44-45 22.057524101221848 27.40610073020917 28.612685679941908 21.923689488627073 46-47 22.421630426770456 27.090528155865456 28.35130807180623 22.136533345557858 48-49 22.214072306601796 27.330386964888376 28.330017888436338 22.125522840073494 50-51 21.97141396399485 27.53037302151239 28.29270405928237 22.20550895521039 52-53 22.10681018503193 27.390045680670898 28.359640118040772 22.143504016256394 54-55 22.198825614111207 27.15343995375521 28.438501971352203 22.20923246078138 56-57 22.280905662866672 27.137648576217334 28.230157011064165 22.351288749851825 58-59 21.797237085535134 27.21670821008785 28.613486656253116 22.3725680481239 60-61 22.136492467404477 27.740735868451218 28.432474157959692 21.69029750618462 62-63 21.509457085968194 28.188085098369996 28.371747767567378 21.930710048094433 64-65 21.321282158419606 28.502819614415024 28.08654874292672 22.08934948423865 66-67 21.51366869998918 29.043787017989654 27.578870468410056 21.86367381361111 68-69 21.67769324523792 28.803243094561072 27.5180279556935 22.001035704507512 70-71 21.725512568470993 27.94471039601619 27.63345668795601 22.69632034755681 72-73 22.03513377268378 27.374803733637698 27.63515674500831 22.954905748670214 74-75 21.97420037461681 27.459374952333732 27.829616627657828 22.736808045391626 76-77 22.337585253343264 27.2620223218623 27.275344730595297 23.12504769419914 78-79 22.576746038931997 27.35677891849482 26.812189997191137 23.254285045382044 80-81 22.443548470438518 27.62277361860148 26.909155420650936 23.024522490309064 82-83 22.35786417312436 27.38447406969149 27.05510971291988 23.202552044264273 84-85 22.509936562915858 27.724406216833746 26.968427286268838 22.797229933981562 86-87 22.835872299047907 27.63351756909297 27.057658403883984 22.472951727975136 88-89 22.63275682936409 27.828596083332595 27.325187112366063 22.21345997493725 90-91 22.661837127002148 27.410085027112842 27.219255214870003 22.708822631015007 92-93 22.649522199334882 27.007998344061697 27.37502285213158 22.967456604471845 94-95 21.945918550145674 27.522163828882878 27.909168224144437 22.62274939682701 96-97 22.042530198915706 27.34253676637807 28.189503133076926 22.425429901629297 98-99 23.237849664452824 29.24418052502166 28.47277942914052 19.045190381384995 100 22.31849390660478 30.317311800294856 22.14738420461696 25.216810088483406 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5236.0 1 4488.0 2 4811.0 3 6449.5 4 8445.0 5 11850.5 6 14867.0 7 18759.0 8 23760.5 9 26830.0 10 27132.5 11 27491.5 12 30840.5 13 38554.5 14 53193.0 15 69584.5 16 82106.5 17 89485.0 18 89290.0 19 83008.5 20 75052.5 21 68948.5 22 69289.5 23 78857.0 24 98150.5 25 127757.5 26 169375.5 27 217641.0 28 262110.0 29 310901.5 30 359215.0 31 405007.0 32 459315.5 33 516167.5 34 573974.0 35 628694.5 36 691255.0 37 748227.0 38 781858.5 39 814328.5 40 863277.0 41 905935.5 42 932117.5 43 959912.0 44 1002471.5 45 1072449.5 46 1093214.5 47 1068866.0 48 1048845.0 49 1016232.0 50 985426.5 51 949717.0 52 902801.0 53 851445.0 54 795954.0 55 732380.5 56 664384.5 57 594164.0 58 523801.0 59 454041.5 60 377872.5 61 300764.5 62 231962.0 63 175452.5 64 129996.0 65 93924.0 66 68738.0 67 52450.5 68 39899.5 69 28798.5 70 20854.5 71 15112.5 72 10724.0 73 7304.0 74 4872.5 75 3212.5 76 2072.0 77 1180.0 78 706.5 79 472.0 80 323.5 81 212.0 82 143.0 83 101.0 84 70.0 85 45.5 86 30.0 87 22.5 88 14.5 89 9.0 90 7.5 91 6.5 92 5.5 93 4.0 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.018225565612579004 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.551725220783729E-4 26-27 3.716922133717944E-4 28-29 0.0038517660775671744 30-31 0.006104752493368033 32-33 0.004252052631279087 34-35 0.0020452418843951593 36-37 0.0 38-39 4.231963751368406E-6 40-41 4.123592746923444E-4 42-43 2.1381794172007124E-6 44-45 6.459302946475632E-6 46-47 3.733327869362002E-4 48-49 0.0014178216151106177 50-51 0.0028130644178965044 52-53 0.0 54-55 0.003000779251732143 56-57 0.03973919018350172 58-59 0.06302427553913013 60-61 0.04296716220923769 62-63 0.014071468862286132 64-65 3.6930425502620256E-4 66-67 0.0 68-69 1.8507113081676538E-5 70-71 0.0028444391670798515 72-73 0.005197881623955629 74-75 0.004288883510385648 76-77 0.00313628905738374 78-79 0.007750497126677345 80-81 0.01576235980460972 82-83 0.04290345943867535 84-85 0.019567076427169247 86-87 0.001945115723241641 88-89 0.0013532453624933748 90-91 1.318508608542705E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 137.0 20-21 741.0 22-23 1691.0 24-25 1931.0 26-27 5509.0 28-29 14079.0 30-31 42704.0 32-33 54814.0 34-35 76463.0 36-37 118916.0 38-39 75516.0 40-41 136893.0 42-43 153744.0 44-45 183231.0 46-47 186628.0 48-49 176214.0 50-51 90242.0 52-53 15899.0 54-55 14840.0 56-57 14840.0 58-59 98615.0 60-61 186612.0 62-63 182783.0 64-65 209326.0 66-67 234908.0 68-69 238126.0 70-71 279895.0 72-73 194135.0 74-75 187212.0 76-77 195092.0 78-79 202531.0 80-81 205018.0 82-83 192403.0 84-85 188624.0 86-87 193967.0 88-89 202585.0 90-91 210527.0 92-93 208644.0 94-95 242986.0 96-97 816140.0 98-99 1818022.0 100-101 1.6096691E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.55467449358605 #Duplication Level Percentage of deduplicated Percentage of total 1 86.6224218939041 68.91218577615622 2 8.778122825406557 13.966814080798729 3 2.3682037472788813 5.652050347477864 4 0.9498985130461833 3.022754680293221 5 0.4644760793828331 1.8475621652679157 6 0.2578846283021801 1.2309556596887619 7 0.15433891217002854 0.8594867343566549 8 0.09657968361277615 0.6146692234006347 9 0.06900354167958472 0.49405988675015644 >10 0.23383077349824147 2.8352691149465197 >50 0.0039742375025313146 0.21690952794172097 >100 0.0011242362188602772 0.16252193090309372 >500 6.523314346944579E-5 0.03455842315666795 >1k 7.569485383094381E-5 0.15020244886182488 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.350774622029326E-6 2 0.0 2.505232386608798E-5 0.0 4.175387311014663E-6 8.350774622029326E-6 3 0.0 2.505232386608798E-5 0.0 8.350774622029326E-6 8.350774622029326E-6 4 0.0 6.263080966521995E-5 0.0 1.252616193304399E-5 8.350774622029326E-6 5 8.350774622029326E-6 6.680619697623461E-5 0.0 1.252616193304399E-5 8.350774622029326E-6 6 9.603390815333726E-5 6.680619697623461E-5 0.0 1.252616193304399E-5 1.252616193304399E-5 7 9.603390815333726E-5 6.680619697623461E-5 0.0 1.6701549244058652E-5 1.6701549244058652E-5 8 1.0020929546435192E-4 9.18585208423226E-5 0.0 1.6701549244058652E-5 2.0876936555073316E-5 9 1.0020929546435192E-4 2.1712014017276248E-4 0.0 2.9227711177102644E-5 3.3403098488117305E-5 10-11 1.1899853836391791E-4 2.1712014017276248E-4 0.0 2.9227711177102644E-5 3.3403098488117305E-5 12-13 1.2734931298594723E-4 2.1712014017276248E-4 0.0 4.59292604211613E-5 3.757848579913197E-5 14-15 1.503139431965279E-4 3.4029406584769507E-4 0.0 5.636772869869795E-5 7.724466525377128E-5 16-17 2.1294475286174784E-4 3.465571468142171E-4 0.0 6.054311600971262E-5 9.81216018088446E-5 18-19 2.1294475286174784E-4 3.6534638971378306E-4 0.0 8.350774622029327E-5 1.252616193304399E-4 20-21 2.1294475286174784E-4 3.883110199243637E-4 0.0 9.394621449782992E-5 1.586647178185572E-4 22-23 2.1294475286174784E-4 4.3215258669001763E-4 0.0 1.0647237643087392E-4 1.7327857340710854E-4 24-25 2.1503244651725517E-4 4.864326217332083E-4 0.0 1.3361239395246925E-4 1.8162934802913786E-4 26-27 2.2547091479479183E-4 5.177480265658183E-4 0.0 2.0668167189522583E-4 1.8789242899565985E-4 28-29 2.2547091479479183E-4 5.21923413876833E-4 0.0 6.200450156856775E-4 1.9206781630667452E-4 30-31 2.359093830723285E-4 5.991680791306042E-4 0.0 0.0019540812615548623 1.983308972731965E-4 32-33 2.379970767278358E-4 6.096065474081409E-4 0.0 0.004807958488633385 2.0668167189522583E-4 34-35 2.4217246403885047E-4 6.889389063174195E-4 0.0 0.00881841800086297 2.2547091479479183E-4 36-37 2.463478513498651E-4 7.724466525377128E-4 0.0 0.018467738076617855 2.2964630210580648E-4 38-39 2.505232386608798E-4 8.079374446813374E-4 0.0 0.1679194637934212 2.379970767278358E-4 40-41 2.505232386608798E-4 9.144098211122112E-4 0.0 0.32363635817040204 2.442601576943578E-4 42-43 2.505232386608798E-4 9.457252259448211E-4 0.0 0.3451917951635153 2.5261093231638713E-4 44-45 2.5261093231638713E-4 0.001075162232586276 0.0 0.37329841484761045 2.609617069384165E-4 46-47 2.5469862597189447E-4 0.0011607576724620764 0.0 0.4047891859472831 2.714001752159531E-4 48-49 2.609617069384165E-4 0.001164933059773091 0.0 0.43553673810559507 2.7975094983798246E-4 50-51 2.755755625269678E-4 0.0013027208410365749 0.0 0.4679356559454133 2.8810172446001175E-4 52-53 2.8601403080450447E-4 0.001315247002969619 0.0 0.9349485512950924 3.110663546705924E-4 54-55 2.901894181155191E-4 0.0013256854712471555 0.0 1.5578140411093604 3.4029406584769507E-4 56-57 2.9227711177102643E-4 0.001340299326835707 0.0 2.2379449678941943 3.569956150917537E-4 58-59 2.9227711177102643E-4 0.0013423870204912142 0.0 2.942481033511909 3.674340833692904E-4 60-61 3.089786610150851E-4 0.0013820531999458536 0.0 3.13013129004353 3.71609470680305E-4 62-63 3.465571468142171E-4 0.0014008424428454194 0.0 3.13675762970611 3.71609470680305E-4 64-65 3.465571468142171E-4 0.0015762087099080355 0.0 3.1427806259022493 3.757848579913197E-4 66-67 3.549079214362464E-4 0.0015991733401186162 0.0 3.1482441201987115 3.883110199243637E-4 68-69 3.549079214362464E-4 0.0016430149068842699 0.0 3.1534048989151255 3.945741008908857E-4 70-71 3.6743408336929035E-4 0.0016638918434393433 0.0 3.157993649569931 4.21714118412481E-4 72-73 3.96661794546393E-4 0.00167433031171688 0.0 3.1616492011607242 4.6346799152262763E-4 74-75 4.008371818574077E-4 0.0017119087975160118 0.0 3.16447176298297 4.6346799152262763E-4 76-77 4.1127565013494437E-4 0.0018037673183583347 0.0 3.1673590433085366 4.697310724891496E-4 78-79 4.1962642475697366E-4 0.0018413458041574666 0.0 3.169206652193661 4.759941534556716E-4 80-81 4.21714118412481E-4 0.0018434334978129738 0.0 3.1698141710474133 4.885203153887156E-4 82-83 4.258895057234957E-4 0.0018476088851239886 0.0 3.170302691362802 5.093972519437889E-4 84-85 4.27977199379003E-4 0.001858047353401525 0.0 3.1705177238093194 5.093972519437889E-4 86-87 4.363279740010323E-4 0.0018998012265116718 0.0 3.170653423896927 5.135726392548036E-4 88 4.425910549675543E-4 0.0019958351346650092 0.0 3.170668037752516 5.344495758098769E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 29670 0.0 50.637135 1 GTATCAA 55325 0.0 38.11405 1 TCAACGC 65255 0.0 31.670488 4 ATCAACG 65410 0.0 31.549006 3 CAACGCA 67135 0.0 30.744833 5 TATCAAC 68230 0.0 30.523546 2 AACGCAG 69410 0.0 29.76214 6 ACGCAGA 80360 0.0 25.685097 7 CGCAGAG 81160 0.0 25.410532 8 GCAGAGT 95685 0.0 21.512398 9 TGGTATC 14030 0.0 20.507631 2 GTGGTAT 15175 0.0 20.504543 1 TACATGG 68540 0.0 20.102924 2 GAGTACT 53920 0.0 20.013077 12-13 ATCTCGT 47850 0.0 19.89954 94 GTACATG 71090 0.0 19.772522 1 ACATGGG 69855 0.0 19.137367 3 CAGAGTA 93135 0.0 19.007946 10-11 AGAGTAC 85005 0.0 18.870914 10-11 GTACTTT 60755 0.0 17.70815 14-15 >>END_MODULE